Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold614G53203 Striga asiatica HOM05D004251 ORTHO05D005010 2.0e-247 858.6 420 100.0
MSTRG.2762 Avicennia marina HOM05D004251 ORTHO05D005010 8.8e-195 683.7 477 71.7
unitig_21.g20954 Utricularia gibba HOM05D004251 ORTHO05D005010 1.4e-187 659.8 480 67.9
QL06p046103 Quercus lobata HOM05D004251 ORTHO05D005010 8.3e-185 650.6 478 68.0
QL06p046182 Quercus lobata HOM05D004251 ORTHO05D005010 1.1e-184 650.2 478 68.2
GSVIVG01018958001 Vitis vinifera HOM05D004251 ORTHO05D005010 7.0e-184 647.5 478 67.8
RcHm_v2.0_Chr2g0101541 Rosa chinensis HOM05D004251 ORTHO05D005010 2.9e-182 642.1 479 67.4
Hma1.2p1_0224F.1_g094630 Hydrangea macrophylla HOM05D004251 ORTHO05D005010 1.5e-181 639.8 476 67.6
Oeu033644.1 Olea europaea HOM05D004251 ORTHO05D005010 4.3e-181 638.3 490 67.8
PGR102G3108 Punica granatum HOM05D004251 ORTHO05D005010 7.3e-181 637.5 478 66.7
CSS0006960 Camellia sinensis var. sinensis HOM05D004251 ORTHO05D005010 1.2e-180 636.7 479 67.4
Manes.02G094600 Manihot esculenta HOM05D004251 ORTHO05D005010 4.7e-180 634.8 475 67.6
Actinidia36561 Actinidia chinensis HOM05D004251 ORTHO05D005010 3.0e-179 632.1 477 66.7
AT5G49555 Arabidopsis thaliana HOM05D004251 ORTHO05D005010 4.0e-179 631.7 475 65.7
Cc11_g04410 Coffea canephora HOM05D004251 ORTHO05D005010 4.0e-179 631.7 474 66.7
Thhalv10024792m.g Eutrema salsugineum HOM05D004251 ORTHO05D005010 6.8e-179 630.9 475 65.7
ECA232G3289 Erigeron canadensis HOM05D004251 ORTHO05D005010 1.7e-177 626.3 475 66.5
Aa31LG1G15090 Aethionema arabicum HOM05D004251 ORTHO05D005010 2.2e-177 625.9 474 65.4
arahy.Tifrunner.gnm1.ann1.UMLA17 Arachis hypogaea HOM05D004251 ORTHO05D005010 2.9e-177 625.5 479 64.5
TWI73G1034 Tripterygium wilfordii HOM05D004251 ORTHO05D005010 3.7e-177 625.2 478 65.9
CARHR281200 Cardamine hirsuta HOM05D004251 ORTHO05D005010 4.9e-177 624.8 475 65.3
HanXRQChr09g0274621 Helianthus annuus HOM05D004251 ORTHO05D005010 8.3e-177 624.0 475 66.5
Carub.0008s2797 Capsella rubella HOM05D004251 ORTHO05D005010 1.4e-176 623.2 475 64.8
COL.COLO4_22078 Corchorus olitorius HOM05D004251 ORTHO05D005010 1.8e-176 622.9 479 65.3
FAN26G0083 Fragaria x ananassa HOM05D004251 ORTHO05D005010 7.0e-176 620.9 478 65.5
FAN19G0724 Fragaria x ananassa HOM05D004251 ORTHO05D005010 9.2e-176 620.5 479 64.9
AL8G23350 Arabidopsis lyrata HOM05D004251 ORTHO05D005010 1.2e-175 620.2 473 64.5
Eucgr.D02612 Eucalyptus grandis HOM05D004251 ORTHO05D005010 1.6e-175 619.8 479 64.3
Medtr8g077580 Medicago truncatula HOM05D004251 ORTHO05D005010 2.0e-175 619.4 477 64.6
DCAR_017290 Daucus carota HOM05D004251 ORTHO05D005010 3.5e-175 618.6 474 64.6
Prupe.7G154800 Prunus persica HOM05D004251 ORTHO05D005010 3.5e-175 618.6 479 65.1
FvH4_1g13300 Fragaria vesca HOM05D004251 ORTHO05D005010 7.8e-175 617.5 479 64.7
Ciclev10025293m.g Citrus clementina HOM05D004251 ORTHO05D005010 2.3e-174 615.9 478 64.6
THA.LOC104821294 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 2.3e-174 615.9 477 64.2
Cpa.g.sc39.20 Carica papaya HOM05D004251 ORTHO05D005010 3.0e-174 615.5 477 64.6
CiPaw.01G038300 Carya illinoinensis HOM05D004251 ORTHO05D005010 3.0e-174 615.5 475 65.1
Sp7g14220 Schrenkiella parvula HOM05D004251 ORTHO05D005010 3.0e-174 615.5 474 64.3
Thecc.01G035600 Theobroma cacao HOM05D004251 ORTHO05D005010 3.9e-174 615.1 479 65.1
CANSAT01G2654 Cannabis sativa HOM05D004251 ORTHO05D005010 6.6e-174 614.4 478 64.2
A01p21680 Brassica napus HOM05D004251 ORTHO05D005010 8.6e-174 614.0 475 64.4
Glyma.16G139600 Glycine max HOM05D004251 ORTHO05D005010 1.1e-173 613.6 479 63.0
Lalb_Chr05g0227621 Lupinus albus HOM05D004251 ORTHO05D005010 1.1e-173 613.6 479 63.5
Sopen02g029950 Solanum pennellii HOM05D004251 ORTHO05D005010 1.1e-173 613.6 478 65.5
LjContig00448g0018994 Lotus japonicus HOM05D004251 ORTHO05D005010 1.5e-173 613.2 479 64.3
Glyma.02G056800 Glycine max HOM05D004251 ORTHO05D005010 2.5e-173 612.5 479 63.3
Lj1g0003213 Lotus japonicus HOM05D004251 ORTHO05D005010 2.5e-173 612.5 472 64.6
THA.LOC104821560 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 2.5e-173 612.5 477 64.4
MD02G1147300 Malus domestica HOM05D004251 ORTHO05D005010 3.3e-173 612.1 479 64.7
Solyc02g085250.4 Solanum lycopersicum HOM05D004251 ORTHO05D005010 3.3e-173 612.1 478 65.3
BraA01t02077Z Brassica rapa HOM05D004251 ORTHO05D005010 7.3e-173 610.9 483 63.4
Psat4g093160 Pisum sativum HOM05D004251 ORTHO05D005010 7.3e-173 610.9 474 64.1
Psat4g093040 Pisum sativum HOM05D004251 ORTHO05D005010 9.5e-173 610.5 474 64.1
Duzib147G0019 Durio zibethinus HOM05D004251 ORTHO05D005010 1.2e-172 610.1 474 64.8
CAN.G358.93 Capsicum annuum HOM05D004251 ORTHO05D005010 2.1e-172 609.4 478 64.6
Hund13977 Selenicereus undatus HOM05D004251 ORTHO05D005010 3.6e-172 608.6 480 64.4
VMungo0251G3189 Vigna mungo HOM05D004251 ORTHO05D005010 3.6e-172 608.6 477 63.9
BcaC09g50275 Brassica carinata HOM05D004251 ORTHO05D005010 4.7e-172 608.2 475 64.2
Ca_22268_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 6.2e-172 607.8 477 62.7
Ca_22281_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 6.2e-172 607.8 477 62.7
BolC1t02651H Brassica oleracea HOM05D004251 ORTHO05D005010 1.8e-171 606.3 484 63.2
MELO3C016373.2 Cucumis melo HOM05D004251 ORTHO05D005010 4.0e-171 605.1 476 64.5
Nn5g29614 Nelumbo nucifera HOM05D004251 ORTHO05D005010 4.0e-171 605.1 476 64.9
C01p27030 Brassica napus HOM05D004251 ORTHO05D005010 5.2e-171 604.7 484 63.0
Sed0021773 Sechium edule HOM05D004251 ORTHO05D005010 5.2e-171 604.7 474 65.2
Dinv13532 Davidia involucrata HOM05D004251 ORTHO05D005010 1.2e-170 603.6 407 74.2
Sabra07G0022400 Salix brachista HOM05D004251 ORTHO05D005010 1.2e-170 603.6 531 58.8
Gorai.003G014800 Gossypium raimondii HOM05D004251 ORTHO05D005010 2.2e-169 599.4 473 64.1
CsaV3_4G005780 Cucumis sativus L. HOM05D004251 ORTHO05D005010 3.7e-169 598.6 475 64.0
Gohir.D03G014500 Gossypium hirsutum HOM05D004251 ORTHO05D005010 3.7e-169 598.6 473 63.6
PSO210G3399 Papaver somniferum HOM05D004251 ORTHO05D005010 3.7e-169 598.6 481 64.2
Lj1g0003281 Lotus japonicus HOM05D004251 ORTHO05D005010 4.9e-169 598.2 479 62.0
LjContig00448g0013547 Lotus japonicus HOM05D004251 ORTHO05D005010 6.4e-169 597.8 479 62.0
MD15G1261600 Malus domestica HOM05D004251 ORTHO05D005010 6.4e-169 597.8 479 63.5
PSO170G5998 Papaver somniferum HOM05D004251 ORTHO05D005010 6.6e-166 587.8 481 63.2
Potri.007G025300 Populus trichocarpa HOM05D004251 ORTHO05D005010 6.6e-166 587.8 477 63.5
Duzib147G1661 Durio zibethinus HOM05D004251 ORTHO05D005010 3.3e-165 585.5 474 61.8
EL10Ac6g15559 Beta vulgaris HOM05D004251 ORTHO05D005010 4.3e-165 585.1 517 57.6
Aqoxy5G01628 Aquilegia oxysepala HOM05D004251 ORTHO05D005010 5.6e-165 584.7 479 62.0
Lsat_1_v5_gn_4_152121 Lactuca sativa HOM05D004251 ORTHO05D005010 1.2e-164 583.6 475 63.4
TPR.G24109 Trifolium pratense HOM05D004251 ORTHO05D005010 2.1e-164 582.8 477 61.8
Thecc.01G035500 Theobroma cacao HOM05D004251 ORTHO05D005010 4.7e-164 581.6 481 61.3
Ah.03g140880 Amaranthus hybridus HOM05D004251 ORTHO05D005010 1.1e-163 580.5 468 62.8
Os12g0631800 Oryza sativa ssp. japonica HOM05D004251 ORTHO05D005010 2.0e-162 576.2 486 60.5
HPP92_017686 Vanilla planifolia HOM05D004251 ORTHO05D005010 7.5e-162 574.3 476 60.9
Hma1.2p1_0400F.1_g144420 Hydrangea macrophylla HOM05D004251 ORTHO05D005010 1.7e-161 573.2 477 60.8
Nitab4.5_0000178g0050 Nicotiana tabacum HOM05D004251 ORTHO05D005010 1.7e-161 573.2 478 63.0
Zm00001eb232720 Zea mays HOM05D004251 ORTHO05D005010 4.9e-161 571.6 442 65.2
CsaV3_6G046240 Cucumis sativus L. HOM05D004251 ORTHO05D005010 8.3e-161 570.9 486 61.3
ClCG01G019560 Citrullus lanatus HOM05D004251 ORTHO05D005010 4.1e-160 568.5 488 60.5
PGR102G0408 Punica granatum HOM05D004251 ORTHO05D005010 7.1e-160 567.8 475 60.2
Dinv39988 Davidia involucrata HOM05D004251 ORTHO05D005010 1.6e-159 566.6 479 61.2
ATR0733G178 Amborella trichopoda HOM05D004251 ORTHO05D005010 2.7e-159 565.8 482 59.3
Ciclev10025284m.g Citrus clementina HOM05D004251 ORTHO05D005010 1.7e-158 563.1 479 58.9
Eucgr.D01664 Eucalyptus grandis HOM05D004251 ORTHO05D005010 3.0e-158 562.4 487 58.9
Peaxi162Scf00366g00011 Petunia axillaris HOM05D004251 ORTHO05D005010 6.6e-158 561.2 454 64.1
arahy.Tifrunner.gnm1.ann1.05783X Arachis hypogaea HOM05D004251 ORTHO05D005010 8.6e-158 560.8 474 60.5
GSVIVG01018957001 Vitis vinifera HOM05D004251 ORTHO05D005010 8.6e-158 560.8 477 59.3
CiPaw.02G018000 Carya illinoinensis HOM05D004251 ORTHO05D005010 1.9e-157 559.7 483 59.2
Gorai.003G014700 Gossypium raimondii HOM05D004251 ORTHO05D005010 7.3e-157 557.8 474 59.3
Sed0017564 Sechium edule HOM05D004251 ORTHO05D005010 7.3e-157 557.8 485 59.2
BcaNung00241 Brassica carinata HOM05D004251 ORTHO05D005010 6.8e-155 551.2 457 62.4
Atru.chr3.571 Acer truncatum HOM05D004251 ORTHO05D005010 1.3e-153 547.0 435 63.7
FAN28G2031 Fragaria x ananassa HOM05D004251 ORTHO05D005010 8.4e-153 544.3 486 59.5
Ca_12487_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 1.3e-150 537.0 474 58.4
arahy.Tifrunner.gnm1.ann1.BIDD64 Arachis hypogaea HOM05D004251 ORTHO05D005010 5.6e-149 531.6 474 58.4
Medtr1g034450 Medicago truncatula HOM05D004251 ORTHO05D005010 1.1e-147 527.3 474 57.6
Prupe.7G154900 Prunus persica HOM05D004251 ORTHO05D005010 1.4e-147 526.9 478 56.7
TPR.G18620 Trifolium pratense HOM05D004251 ORTHO05D005010 3.1e-147 525.8 474 57.4
Gohir.D03G014400 Gossypium hirsutum HOM05D004251 ORTHO05D005010 2.0e-146 523.1 474 56.1
Pp3c15_20190 Physcomitrium patens HOM05D004251 ORTHO05D005010 3.4e-146 522.3 489 53.6
Phvul.003G253700 Phaseolus vulgaris HOM05D004251 ORTHO05D005010 1.3e-145 520.4 479 57.2
Sc03g0002980 Simmondsia chinensis HOM05D004251 ORTHO05D005010 4.9e-145 518.5 426 60.8
Oeu041447.3 Olea europaea HOM05D004251 ORTHO05D005010 4.2e-144 515.4 542 53.3
COL.COLO4_22077 Corchorus olitorius HOM05D004251 ORTHO05D005010 4.6e-143 511.9 474 57.2
CDE04G2049 Ceratophyllum demersum HOM05D004251 ORTHO05D005010 7.8e-143 511.1 474 57.6
Lj2C453G4 Lonicera japonica HOM05D004251 ORTHO05D005010 7.8e-143 511.1 474 58.6
Mapoly0014s0043 Marchantia polymorpha HOM05D004251 ORTHO05D005010 1.1e-139 500.7 478 53.8
AagrBONN_evm.TU.Sc2ySwM_228.727 Anthoceros agrestis HOM05D004251 ORTHO05D005010 1.6e-135 486.9 484 51.9
Haze_15087 Corylus avellana HOM05D004251 ORTHO05D005010 1.8e-134 483.4 534 51.5
TAR625G0258 Trochodendron aralioides HOM05D004251 ORTHO05D005010 8.1e-132 474.6 309 76.4
Gohir.A02G165500 Gossypium hirsutum HOM05D004251 ORTHO05D005010 7.6e-130 468.0 399 59.9
SMO194G0022 Selaginella moellendorffii HOM05D004251 ORTHO05D005010 6.4e-129 464.9 480 51.2
PGSC0003DMG402003505 Solanum tuberosum HOM05D004251 ORTHO05D005010 3.2e-128 462.6 308 75.6
Gohir.A02G165600 Gossypium hirsutum HOM05D004251 ORTHO05D005010 4.2e-128 462.2 408 57.6
SEGI_19545 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 1.6e-124 450.3 411 56.4
BcaC09g50281 Brassica carinata HOM05D004251 ORTHO05D005010 1.4e-123 447.2 447 54.1
AUR62007569 Chenopodium quinoa HOM05D004251 ORTHO05D005010 1.4e-123 447.2 481 52.0
Nitab4.5_0001385g0110 Nicotiana tabacum HOM05D004251 ORTHO05D005010 1.1e-120 437.6 309 72.2
SMO358G0577 Selaginella moellendorffii HOM05D004251 ORTHO05D005010 1.8e-118 430.3 490 48.2
QL06p046194 Quercus lobata HOM05D004251 ORTHO05D005010 4.3e-117 425.6 835 34.3
Oeu056756.2 Olea europaea HOM05D004251 ORTHO05D005010 4.8e-116 422.2 368 62.0
Cpa.g.sc6.114 Carica papaya HOM05D004251 ORTHO05D005010 4.4e-101 372.5 493 44.8
FAN23G1347 Fragaria x ananassa HOM05D004251 ORTHO05D005010 7.0e-91 338.6 411 50.1
PRCOL_00003920 Prasinoderma coloniale HOM05D004251 ORTHO05D005010 1.7e-89 334.0 487 40.2
Atru.chr3.576 Acer truncatum HOM05D004251 ORTHO05D005010 9.1e-83 311.6 228 68.0
Oeu051950.1 Olea europaea HOM05D004251 ORTHO05D005010 8.5e-81 305.1 179 82.1
MELO3C007827.2 Cucumis melo HOM05D004251 ORTHO05D005010 2.0e-74 283.9 398 45.7
arahy.Tifrunner.gnm1.ann1.UBH4LM Arachis hypogaea HOM05D004251 ORTHO05D005010 7.7e-74 282.0 185 71.9
Atru.chr3.575 Acer truncatum HOM05D004251 ORTHO05D005010 2.3e-70 270.4 253 52.6
Oeu009415.3 Olea europaea HOM05D004251 ORTHO05D005010 7.8e-66 255.4 313 48.6
vmacro12727 Vaccinium macrocarpon HOM05D004251 ORTHO05D005010 2.0e-61 240.7 289 51.6
Rhsim10G0122800 Rhododendron simsii HOM05D004251 ORTHO05D005010 2.2e-60 237.3 151 78.1
ClCG07G008350 Citrullus lanatus HOM05D004251 ORTHO05D005010 3.4e-53 213.4 243 49.8
Rhsim10G0122600 Rhododendron simsii HOM05D004251 ORTHO05D005010 7.5e-53 212.2 204 52.9
AUR62004055 Chenopodium quinoa HOM05D004251 ORTHO05D005010 3.9e-49 199.9 213 54.0
vmacro12726 Vaccinium macrocarpon HOM05D004251 ORTHO05D005010 1.4e-46 191.4 98 84.7
AUR62004054 Chenopodium quinoa HOM05D004251 ORTHO05D005010 1.7e-44 184.5 96 82.3
THA.LOC104821290 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 4.1e-43 179.9 125 70.4
Hund13978 Selenicereus undatus HOM05D004251 ORTHO05D005010 1.1e-40 171.8 100 72.0
ClCG07G008380 Citrullus lanatus HOM05D004251 ORTHO05D005010 5.8e-37 159.5 115 67.0
Phvul.003G073200 Phaseolus vulgaris HOM05D004251 ORTHO05D005010 1.3e-33 148.3 80 81.2
Duzib264G0995 Durio zibethinus HOM05D004251 ORTHO05D005010 3.0e-33 147.1 115 65.2
Hund13980 Selenicereus undatus HOM05D004251 ORTHO05D005010 2.2e-28 131.0 115 57.4
Hund13979 Selenicereus undatus HOM05D004251 ORTHO05D005010 7.8e-26 122.5 103 63.1
Zm00001eb293990 Zea mays HOM05D004251 ORTHO05D005010 3.9e-25 120.2 148 48.0
Zm00001eb412790 Zea mays HOM05D004251 ORTHO05D005010 1.2e-21 108.6 148 47.3
SEGI_32759 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 1.0e-17 95.5 83 56.6
SEGI_15174 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 3.1e-14 84.0 55 74.5
Thecc.01G000700 Theobroma cacao HOM05D004251 ORTHO05D005010 9.0e-14 82.4 84 56.0
SalBow1G7108 Salvia bowleyana HOM05D004251 ORTHO05D005010 3.4e-13 80.5 43 81.4
Zm00001eb420900 Zea mays HOM05D004251 ORTHO05D015097 3.7e-07 60.5 36 77.8


User provided reference genes

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