Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 0.0e+00 1274.2 628 100.0
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 2.3e-239 832.4 616 68.7
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 5.9e-219 764.6 615 63.9
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 5.3e-204 714.9 624 59.6
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 5.5e-201 704.9 639 57.6
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 4.0e-199 698.7 656 56.9
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.0e-195 686.4 651 55.6
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 2.7e-195 686.0 659 54.2
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 4.5e-195 685.3 657 54.8
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 7.7e-195 684.5 639 57.0
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 2.3e-194 682.9 655 53.9
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 8.6e-194 681.0 645 55.8
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 4.2e-193 678.7 651 55.0
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 2.1e-192 676.4 636 56.9
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 8.0e-192 674.5 634 56.6
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.0e-191 674.1 630 56.8
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 1.2e-190 670.6 636 56.0
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 2.6e-190 669.5 672 53.7
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 3.4e-190 669.1 600 59.5
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 1.7e-189 666.8 638 55.5
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.2e-187 660.6 637 54.3
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.5e-187 659.1 644 53.7
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 3.5e-187 659.1 615 56.3
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 3.8e-186 655.6 643 54.3
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 8.6e-186 654.4 635 54.2
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 7.3e-185 651.4 637 54.3
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 1.2e-184 650.6 639 53.5
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 1.6e-184 650.2 570 58.2
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 1.8e-183 646.7 622 54.8
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 4.0e-183 645.6 664 53.9
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 2.0e-182 643.3 642 53.9
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 7.5e-182 641.3 695 51.8
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 1.3e-181 640.6 655 52.5
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 2.2e-181 639.8 680 50.9
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 2.9e-181 639.4 628 54.9
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.4e-180 637.1 654 52.9
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 1.9e-180 636.7 647 53.3
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 2.4e-180 636.3 670 50.4
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 3.2e-180 636.0 647 53.2
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 5.4e-180 635.2 636 53.1
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 9.2e-180 634.4 641 54.0
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 1.6e-179 633.6 677 51.8
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 1.0e-178 630.9 659 51.3
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 1.3e-178 630.6 648 52.0
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 2.3e-178 629.8 651 52.4
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 2.3e-178 629.8 613 55.3
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.9e-178 629.0 639 54.3
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.9e-178 629.0 639 54.3
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 5.0e-178 628.6 643 52.6
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 1.1e-177 627.5 645 52.1
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 4.3e-177 625.5 646 52.5
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.3e-177 624.8 639 54.8
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 9.5e-177 624.4 643 52.3
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 4.7e-176 622.1 661 52.8
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 3.1e-175 619.4 634 53.0
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.5e-174 617.1 642 53.4
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 5.8e-174 615.1 618 52.3
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 1.3e-173 614.0 611 53.5
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 4.9e-173 612.1 703 49.4
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 6.4e-173 611.7 645 52.1
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 1.9e-172 610.1 539 56.8
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 1.9e-172 610.1 656 50.6
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 2.4e-172 609.8 542 57.9
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 2.1e-171 606.7 634 52.5
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 2.7e-171 606.3 665 49.2
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 4.6e-171 605.5 604 52.6
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-170 603.6 626 53.7
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 5.1e-170 602.1 644 51.1
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 1.1e-169 600.9 558 55.9
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 5.6e-169 598.6 536 59.3
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.6e-168 597.0 659 49.8
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 4.7e-168 595.5 663 48.7
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 6.2e-168 595.1 602 52.8
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 1.1e-167 594.3 650 50.2
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 5.2e-167 592.0 641 51.3
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 9.9e-166 587.8 649 50.2
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 1.9e-164 583.6 655 50.1
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 9.2e-164 581.3 516 58.3
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 1.7e-162 577.0 585 52.5
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 2.3e-162 576.6 631 49.3
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 6.6e-154 548.5 595 49.9
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 7.3e-153 545.0 659 47.2
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 1.6e-152 543.9 603 50.4
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 2.4e-151 540.0 511 53.0
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.0e-151 538.1 654 48.6
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 1.2e-150 537.7 517 55.9
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 5.8e-150 535.4 526 51.9
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 1.0e-146 524.6 474 57.0
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 1.3e-144 517.7 550 50.5
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 9.0e-143 511.5 644 46.3
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.9e-140 503.8 498 53.6
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 2.4e-140 503.4 651 45.2
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 8.7e-138 495.0 546 49.5
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 2.1e-136 490.3 526 51.1
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 7.6e-134 481.9 359 70.2
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 6.0e-131 472.2 491 51.1
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 1.8e-130 470.7 512 48.2
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 3.4e-118 429.9 670 38.1
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 5.9e-118 429.1 394 56.9
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 6.5e-117 425.6 634 40.7
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 5.7e-113 412.5 681 36.1
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 1.6e-107 394.4 637 38.6
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 7.7e-102 375.6 403 52.6
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 4.2e-92 343.2 495 42.4
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 1.7e-88 331.3 314 55.7
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 3.5e-86 323.6 446 41.3
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 8.5e-85 318.9 553 36.0
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 2.5e-84 317.4 238 66.4
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 2.7e-78 297.4 289 54.0
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 3.2e-71 273.9 376 40.2
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 1.4e-66 258.5 197 61.9
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.3e-64 251.9 181 65.2
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.0e-59 232.6 163 72.4
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.0e-59 232.6 163 72.4
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.0e-59 232.6 163 72.4
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.0e-59 232.6 163 72.4
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 8.0e-59 232.6 172 68.6
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 4.0e-58 230.3 154 67.5
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 6.6e-53 213.0 203 54.2
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 1.5e-49 201.8 441 31.3
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 1.2e-46 192.2 225 48.4
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 6.0e-46 189.9 233 42.9
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 2.0e-41 174.9 160 54.4
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 1.7e-40 171.8 234 43.2
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 1.3e-37 162.2 223 40.4
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.1e-34 152.5 116 62.1
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 7.9e-30 136.3 489 26.8
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-29 133.7 161 50.3
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 1.6e-27 128.6 137 48.9
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 1.1e-26 125.9 156 41.7
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.1e-26 125.9 141 48.2
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 9.3e-23 112.8 89 59.6
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 3.9e-21 107.5 216 33.3
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 1.3e-19 102.4 404 25.2
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 4.8e-19 100.5 120 50.0
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.0e-17 95.1 45 93.3
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 5.5e-15 87.0 91 48.4
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 7.1e-15 86.7 104 46.2
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 4.6e-14 84.0 161 37.9
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 3.3e-12 77.8 115 39.1
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 9.0e-10 69.7 50 56.0
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-09 67.8 212 27.4
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 2.9e-08 64.7 102 33.3
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 5.5e-07 60.5 33 75.8
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 7.2e-07 60.1 33 75.8
RcHm_v2.0_Chr2g0113271 Rosa chinensis HOM05D002465 ORTHO05D050744 3.5e-06 57.8 38 60.5


User provided reference genes

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