Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 6.5e-204 713.8 343 100.0
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 1.0e-111 407.5 341 58.7
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.6e-106 390.2 386 53.1
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.7e-103 380.2 292 62.0
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.6e-101 373.6 346 55.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.6e-101 373.6 350 56.0
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 1.6e-101 373.6 340 54.1
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.0e-99 366.7 349 54.7
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 3.7e-98 362.5 344 54.7
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 2.4e-97 359.8 394 50.8
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 4.1e-97 359.0 338 54.4
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 2.6e-96 356.3 343 56.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 2.6e-96 356.3 340 56.8
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.0e-95 354.4 340 54.4
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.0e-95 354.4 346 55.2
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 3.6e-93 345.9 345 53.3
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 7.9e-93 344.7 338 54.1
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.1e-91 340.9 335 53.1
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 3.3e-91 339.3 302 56.3
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 1.7e-90 337.0 340 50.9
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.7e-90 337.0 335 53.1
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 2.8e-90 336.3 334 52.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 2.8e-90 336.3 341 52.8
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 2.8e-90 336.3 312 53.5
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 3.7e-90 335.9 339 53.4
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.7e-90 335.9 292 57.2
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.7e-90 335.9 292 57.2
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 3.7e-90 335.9 304 55.6
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 3.7e-90 335.9 334 51.8
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 4.8e-90 335.5 339 52.8
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 6.3e-90 335.1 303 54.5
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.1e-89 334.3 288 57.3
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.4e-89 334.0 341 52.5
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 2.4e-89 333.2 331 53.2
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.4e-89 333.2 344 50.9
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 2.4e-89 333.2 305 54.4
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.4e-89 333.2 297 55.6
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 2.4e-89 333.2 336 51.8
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 4.1e-89 332.4 295 57.3
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 4.1e-89 332.4 329 55.6
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 2.0e-88 330.1 294 57.5
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.0e-88 330.1 257 61.9
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 4.5e-88 328.9 293 57.3
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 5.9e-88 328.6 294 56.5
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.9e-88 328.6 335 52.2
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.9e-88 328.6 340 51.5
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 7.7e-88 328.2 342 50.9
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 7.7e-88 328.2 287 56.4
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.0e-87 327.8 363 46.8
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-87 327.8 331 52.0
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-87 327.8 323 52.3
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.3e-87 327.4 335 52.5
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.3e-87 327.4 339 51.0
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 1.7e-87 327.0 320 54.1
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 2.2e-87 326.6 337 51.9
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 2.9e-87 326.2 335 52.5
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 2.9e-87 326.2 329 52.9
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 3.8e-87 325.9 337 51.3
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.8e-87 325.9 296 56.4
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 6.5e-87 325.1 334 51.5
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.4e-86 323.9 304 54.9
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.5e-86 323.2 257 61.5
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 2.5e-86 323.2 264 59.1
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 3.2e-86 322.8 268 59.7
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 5.5e-86 322.0 268 61.6
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 9.4e-86 321.2 314 52.9
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.2e-85 320.9 299 55.2
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.2e-85 320.9 296 56.4
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.6e-85 320.5 319 54.9
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.6e-85 320.5 287 56.1
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.6e-85 320.5 300 54.7
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 2.7e-85 319.7 320 54.1
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.7e-85 319.7 352 50.6
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.6e-85 319.3 339 51.9
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 3.6e-85 319.3 301 55.5
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.6e-85 319.3 337 49.9
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 4.7e-85 318.9 337 52.5
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 4.7e-85 318.9 329 51.4
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 6.1e-85 318.5 269 57.6
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.0e-85 318.2 353 49.0
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 8.0e-85 318.2 309 52.4
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-84 317.8 353 49.0
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.0e-84 317.8 334 51.2
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.4e-84 317.4 301 51.5
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.4e-84 317.4 367 49.9
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 1.4e-84 317.4 260 59.2
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.4e-84 317.4 331 52.3
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 2.3e-84 316.6 302 55.0
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 8.8e-84 314.7 299 53.8
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.5e-83 313.9 376 46.8
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 4.4e-83 312.4 366 46.7
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.7e-82 310.5 300 52.7
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.2e-82 310.1 334 49.7
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.8e-82 309.7 273 54.6
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 3.7e-82 309.3 255 59.2
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 7.0e-81 305.1 265 55.5
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.2e-80 304.3 373 46.9
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.2e-80 304.3 300 51.0
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 2.6e-80 303.1 323 52.3
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 7.7e-80 301.6 305 53.1
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 3.8e-79 299.3 311 50.5
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 3.8e-79 299.3 311 50.5
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 8.5e-79 298.1 255 54.9
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 5.5e-78 295.4 249 57.8
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 7.2e-78 295.0 307 51.1
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 2.7e-77 293.1 342 48.2
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.7e-77 293.1 312 51.9
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 1.8e-76 290.4 259 57.5
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 4.0e-76 289.3 303 51.2
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.8e-74 282.3 286 49.3
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 7.7e-72 275.0 236 57.6
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.0e-71 274.6 293 48.5
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 9.4e-70 268.1 224 60.3
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 2.1e-69 266.9 207 61.4
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 8.8e-68 261.5 372 41.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 4.1e-65 252.7 337 46.6
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.3e-63 247.7 276 47.8
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.2e-61 241.1 248 51.2
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.0e-60 238.0 241 49.8
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.6e-59 233.4 247 49.4
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 2.2e-58 230.3 245 47.3
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 9.2e-57 224.9 147 66.0
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.0e-55 221.5 203 56.2
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.3e-55 220.3 211 52.6
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 5.0e-55 219.2 244 45.9
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 5.0e-55 219.2 244 45.9
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 7.3e-54 215.3 161 62.7
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.1e-49 201.4 204 51.0
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.2e-49 199.9 172 59.3
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 3.2e-49 199.9 272 39.0
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 1.3e-47 194.5 165 56.4
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 8.6e-47 191.8 215 48.4
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.3e-46 189.9 221 45.7
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 4.3e-46 189.5 216 47.2
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 5.4e-41 172.6 116 62.9
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.1e-40 170.6 202 48.5
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.3e-38 162.9 223 40.8
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 4.3e-38 162.9 297 34.7
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 7.3e-38 162.2 247 38.1
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.6e-32 142.9 108 58.3
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.7e-31 141.0 140 51.4
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.6e-29 134.4 142 52.1
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.0e-27 127.5 153 50.3
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 7.1e-25 119.0 300 30.0
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.2e-24 118.2 122 52.5
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 8.1e-21 105.5 74 60.8
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.0e-20 103.2 74 59.5
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 2.2e-18 97.4 73 60.3
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.8e-18 96.7 76 55.3
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 4.9e-18 96.3 89 56.2
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.4e-17 94.7 99 44.4
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.6e-16 91.3 72 55.6
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 4.6e-16 89.7 79 64.6
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 2.6e-11 73.9 36 88.9
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.3e-10 71.6 88 47.7
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 4.3e-06 56.6 45 53.3


User provided reference genes

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