Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.6e-305 1052.0 530 100.0
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 7.0e-197 691.0 526 66.0
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.2e-169 600.5 524 57.8
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 8.3e-166 587.8 525 57.0
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.7e-164 582.8 535 56.1
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 2.8e-161 572.8 529 56.7
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 1.1e-157 560.8 529 54.4
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.6e-156 557.0 543 53.8
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 1.6e-153 547.0 529 52.9
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 3.0e-147 526.2 559 49.4
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.6e-140 503.8 531 49.5
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 1.7e-139 500.4 538 49.3
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 5.3e-136 488.8 536 47.4
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 4.5e-135 485.7 532 47.2
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 1.1e-133 481.1 536 47.2
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 1.4e-133 480.7 549 46.4
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 1.4e-133 480.7 499 50.3
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 5.4e-133 478.8 537 46.7
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 9.3e-133 478.0 510 50.2
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 2.7e-132 476.5 534 47.2
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 2.7e-132 476.5 535 46.5
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.3e-131 474.2 527 47.8
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 8.7e-131 471.5 531 47.5
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 2.5e-130 469.9 536 46.6
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 2.5e-130 469.9 526 47.7
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 4.3e-130 469.2 536 46.5
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.3e-129 467.6 529 47.6
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 4.0e-128 462.6 532 46.1
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 4.5e-127 459.1 554 46.0
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 7.6e-127 458.4 527 48.8
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 9.9e-127 458.0 527 48.8
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 9.9e-127 458.0 531 46.0
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 3.8e-126 456.1 546 47.4
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 5.5e-125 452.2 534 46.4
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 9.3e-125 451.4 527 45.5
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 1.3e-123 447.6 527 45.9
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.9e-123 446.0 528 44.7
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.6e-121 440.7 524 45.6
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 4.8e-121 439.1 540 44.3
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 1.8e-120 437.2 533 47.7
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 3.1e-120 436.4 523 45.1
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 4.0e-120 436.0 533 45.6
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 6.9e-120 435.3 529 44.4
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 2.6e-119 433.3 533 46.7
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 1.3e-118 431.0 534 44.4
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.7e-118 430.6 528 43.8
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 3.8e-118 429.5 529 44.2
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.9e-117 427.2 527 44.2
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 4.6e-116 422.5 440 49.3
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 2.3e-115 420.2 527 43.6
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 1.9e-114 417.2 528 42.8
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.6e-113 414.1 528 42.8
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 8.2e-113 411.8 531 42.7
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 1.1e-112 411.4 525 42.3
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 4.1e-112 409.5 531 44.3
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 9.0e-112 408.3 529 42.2
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 1.5e-111 407.5 540 42.6
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.0e-110 404.8 541 42.0
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 1.7e-110 404.1 531 41.2
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.9e-110 403.3 508 43.5
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 8.5e-110 401.7 530 43.6
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 8.5e-110 401.7 531 41.1
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 1.4e-109 401.0 517 44.7
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.4e-109 401.0 547 42.0
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.4e-109 401.0 530 42.8
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 1.9e-109 400.6 534 40.8
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.5e-109 400.2 548 41.8
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 3.2e-109 399.8 531 42.9
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 3.2e-109 399.8 390 53.6
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 3.2e-109 399.8 536 41.4
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.2e-109 399.4 544 42.1
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.3e-109 398.3 544 41.9
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.3e-109 398.3 544 41.9
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 1.2e-108 397.9 389 53.2
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 2.7e-108 396.7 530 41.1
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 3.6e-108 396.4 534 41.4
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 6.1e-108 395.6 561 41.7
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.0e-107 394.8 546 41.4
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 1.3e-107 394.4 534 41.4
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.8e-107 394.0 531 40.9
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 3.0e-107 393.3 553 42.1
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.9e-106 390.6 526 42.0
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 2.2e-105 387.1 530 40.2
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.7e-105 386.3 531 40.5
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 4.8e-105 386.0 612 38.4
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 4.8e-105 386.0 547 41.7
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 2.4e-104 383.6 529 40.6
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 5.3e-104 382.5 533 40.0
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 8.5e-102 375.2 533 40.0
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 1.9e-101 374.0 529 39.7
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 5.5e-101 372.5 524 40.6
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 1.2e-100 371.3 534 39.7
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 1.2e-100 371.3 528 41.3
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 2.7e-100 370.2 532 38.2
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 2.7e-100 370.2 532 38.2
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 3.6e-100 369.8 532 38.2
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 3.3e-98 363.2 533 38.1
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 1.3e-97 361.3 533 37.9
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 6.3e-97 359.0 531 39.7
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.2e-95 354.8 543 38.3
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 2.6e-95 353.6 526 39.7
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 3.8e-94 349.7 528 38.1
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 3.2e-93 346.7 431 43.9
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 1.6e-92 344.4 533 38.5
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 8.0e-92 342.0 332 52.7
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.4e-91 341.3 525 39.6
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 6.7e-91 339.0 481 42.4
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 1.1e-88 331.6 418 44.7
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 3.1e-88 330.1 530 37.7
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 4.5e-87 326.2 558 35.8
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 1.7e-86 324.3 676 34.0
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.1e-84 317.4 462 40.3
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 4.4e-82 309.7 559 35.6
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 1.2e-79 301.6 559 34.7
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 1.6e-79 301.2 540 35.2
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 6.1e-76 289.3 471 37.6
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 5.2e-75 286.2 253 56.9
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 1.3e-73 281.6 530 35.7
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.1e-69 268.5 217 59.9
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 4.0e-67 260.0 367 42.5
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.0e-66 257.7 337 45.7
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 4.9e-65 253.1 407 38.8
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 3.8e-62 243.4 280 47.9
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.5e-58 231.5 263 47.9
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 3.4e-58 230.3 488 33.6
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 8.3e-57 225.7 373 38.9
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.4e-56 224.2 423 34.8
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.8e-52 210.7 361 37.7
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 4.9e-49 199.9 280 41.4
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 4.9e-41 173.3 371 34.0
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 3.2e-40 170.6 238 39.9
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.3e-38 164.5 178 46.6
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 4.0e-35 153.7 172 42.4
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 2.4e-32 144.4 155 47.1
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 4.1e-32 143.7 155 47.7
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 6.6e-30 136.3 150 46.0
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 1.8e-27 128.3 136 45.6
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 4.0e-27 127.1 654 22.8
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 4.4e-26 123.6 215 35.3
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 7.6e-26 122.9 135 41.5
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 1.6e-23 115.2 186 33.9
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.1e-21 109.0 494 23.1
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 3.3e-21 107.5 159 37.7
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 7.3e-21 106.3 146 38.4
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 7.1e-16 89.7 187 29.9
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 2.4e-11 74.7 206 26.7
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.0e-10 71.6 282 25.9
CAN.G432.4 Capsicum annuum HOM05D002050 ORTHO05D001949 7.6e-10 69.7 56 60.7
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 9.9e-10 69.3 84 45.2
CAN.G142.9 Capsicum annuum HOM05D000388 ORTHO05D000473 4.2e-08 63.9 46 63.0


User provided reference genes

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