Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.3e-268 929.1 460 100.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 2.9e-183 645.6 466 68.7
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 3.6e-181 638.6 463 68.7
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 3.7e-170 602.1 464 63.6
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 8.3e-162 574.3 469 61.4
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 7.0e-161 571.2 470 61.1
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.5e-159 564.7 470 61.1
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.0e-156 557.4 468 58.5
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.4e-156 557.0 469 59.9
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 3.0e-156 555.8 468 58.8
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 3.4e-155 552.4 472 57.0
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.4e-155 552.0 469 58.2
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 2.8e-154 549.3 471 57.1
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 3.7e-154 548.9 472 57.8
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 6.3e-154 548.1 468 57.1
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 8.3e-154 547.7 469 58.0
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.4e-153 546.2 469 57.8
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.1e-153 545.8 468 57.9
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.7e-152 542.7 470 57.2
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 3.5e-152 542.3 477 57.2
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 5.9e-152 541.6 475 56.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 7.7e-152 541.2 474 56.1
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 5.0e-151 538.5 469 57.6
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 5.0e-151 538.5 474 57.0
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 8.6e-151 537.7 467 55.5
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.1e-150 537.3 463 57.2
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.5e-150 537.0 467 55.5
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 5.6e-150 535.0 465 56.8
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.5e-150 534.3 459 57.3
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 9.5e-150 534.3 469 56.7
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.6e-149 533.5 474 55.9
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.1e-149 531.6 459 57.3
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 8.0e-149 531.2 461 56.6
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.0e-148 530.8 474 55.5
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.8e-148 530.0 471 55.4
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 3.0e-148 529.3 474 55.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.8e-148 528.1 474 55.5
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 8.9e-148 527.7 471 58.2
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.0e-147 526.6 471 55.0
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 3.4e-147 525.8 465 55.7
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 9.8e-147 524.2 460 56.5
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 2.9e-146 522.7 471 52.9
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.7e-146 522.3 474 56.1
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.7e-146 522.3 470 54.7
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.8e-145 520.0 459 57.3
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.8e-145 520.0 468 56.0
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 9.2e-145 517.7 470 55.5
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 9.2e-145 517.7 470 55.5
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.6e-144 516.9 468 56.2
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.6e-144 516.9 467 56.1
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 5.9e-144 515.0 472 53.8
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.9e-144 515.0 470 55.1
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 5.9e-144 515.0 477 55.3
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 5.9e-144 515.0 471 55.6
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 7.8e-144 514.6 386 65.0
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 2.3e-143 513.1 468 55.6
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.9e-143 512.3 467 55.7
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 6.6e-143 511.5 468 55.3
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 8.6e-143 511.1 460 56.5
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.5e-142 510.4 483 53.8
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 3.3e-142 509.2 466 55.6
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 4.7e-141 505.4 469 54.6
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 4.7e-141 505.4 461 57.5
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 3.4e-139 499.2 475 53.7
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 7.5e-139 498.0 472 55.3
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 9.8e-139 497.7 464 53.7
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 4.9e-138 495.4 467 53.5
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.2e-137 492.7 469 52.9
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.5e-136 489.2 459 55.8
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.5e-136 489.2 456 55.3
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.7e-135 486.9 461 54.7
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.3e-135 486.5 469 51.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 3.0e-135 486.1 461 54.9
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.9e-134 483.4 464 52.8
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.8e-133 479.6 450 54.0
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 4.0e-132 475.7 471 51.4
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 6.8e-132 474.9 465 52.3
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 7.5e-131 471.5 470 51.7
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 9.8e-131 471.1 470 50.9
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.9e-130 469.5 457 52.5
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 8.3e-130 468.0 471 51.0
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 8.3e-130 468.0 465 51.2
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.2e-128 464.2 465 52.3
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 6.0e-128 461.8 432 52.5
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.3e-127 459.9 465 51.8
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.9e-127 459.1 465 50.8
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.1e-126 457.6 468 52.1
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.6e-125 453.8 465 51.6
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 5.2e-124 448.7 466 51.5
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 6.8e-124 448.4 467 50.5
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.2e-123 447.6 465 51.6
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.5e-123 447.2 461 51.4
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 2.6e-123 446.4 461 51.4
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.6e-123 446.4 465 50.1
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 3.4e-123 446.0 461 50.5
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 4.4e-123 445.7 461 51.6
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 7.6e-123 444.9 461 51.4
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 2.2e-122 443.4 465 50.1
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 8.4e-122 441.4 461 50.1
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.4e-121 439.9 466 50.4
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 2.4e-121 439.9 458 50.0
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 4.1e-121 439.1 466 50.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.2e-120 437.6 468 47.6
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.6e-120 437.2 465 51.0
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 2.1e-120 436.8 467 49.5
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 8.6e-119 431.4 461 48.4
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.5e-118 430.6 461 48.2
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.5e-118 430.6 466 49.1
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.9e-118 430.3 455 47.5
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.5e-118 429.9 459 47.7
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 2.5e-118 429.9 463 47.5
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-117 427.6 461 47.9
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-117 427.6 461 47.9
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-117 427.6 462 47.8
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-117 427.6 460 49.3
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.2e-117 427.6 460 49.3
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 2.1e-117 426.8 468 48.1
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 2.8e-117 426.4 464 48.9
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.6e-117 426.0 405 52.6
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.1e-116 424.5 462 47.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 6.9e-116 421.8 463 50.1
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.5e-115 420.6 472 46.6
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.0e-115 420.2 465 46.2
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 5.8e-115 418.7 460 48.5
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 7.6e-115 418.3 436 51.4
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.3e-114 417.5 452 46.0
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.2e-114 416.8 460 48.0
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 3.2e-113 412.9 462 46.3
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.7e-112 409.8 458 49.6
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 4.6e-112 409.1 465 47.1
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.3e-111 406.8 464 48.5
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.9e-111 406.0 465 48.8
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 3.9e-111 406.0 462 48.1
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 6.6e-111 405.2 457 47.3
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 6.6e-111 405.2 447 45.6
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 8.7e-111 404.8 467 47.3
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.1e-110 404.4 465 46.7
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.6e-109 399.4 469 46.3
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 5.3e-108 395.6 466 47.0
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 5.8e-107 392.1 465 45.6
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 2.2e-106 390.2 465 45.6
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 2.2e-106 390.2 465 45.6
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 4.9e-106 389.0 465 45.4
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.1e-102 377.9 429 45.2
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 2.1e-101 373.6 313 58.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 2.1e-101 373.6 313 58.1
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.7e-96 356.7 441 42.4
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.7e-95 351.7 482 41.5
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.1e-92 344.7 446 41.0
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.9e-92 342.0 446 41.9
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.5e-91 339.3 489 40.1
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.1e-86 324.7 442 42.1
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-75 287.7 467 39.6
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.0e-71 275.0 294 49.7
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 6.7e-71 272.3 337 45.1
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.7e-69 267.7 354 41.5
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 4.4e-62 243.0 205 61.0
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 6.5e-58 229.2 197 58.4
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.5e-58 228.8 215 52.6
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.5e-57 228.0 197 57.9
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.8e-47 194.5 219 47.0
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.5e-46 189.1 163 54.6
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 2.0e-43 181.0 160 58.8
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 6.6e-34 149.4 339 31.9
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 9.5e-25 119.0 295 32.9
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.2e-22 112.1 138 40.6
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.7e-21 108.2 86 61.6
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 6.0e-19 99.8 82 59.8
SGA_v2.0_scaffold44G16823 Striga asiatica HOM05D003903 ORTHO05D403244 3.9e-18 97.1 102 58.8
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 8.6e-18 95.9 84 58.3
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 2.9e-13 80.9 152 34.2
SGA_v2.0_scaffold86G26891 Striga asiatica HOM05D003903 ORTHO05D402899 5.1e-10 70.1 52 63.5
SGA_v2.0_scaffold6G03305 Striga asiatica HOM05D037617 ORTHO05D399366 5.6e-09 66.6 41 75.6
SGA_v2.0_scaffold23G09991 Striga asiatica HOM05D037617 ORTHO05D404903 9.5e-09 65.9 41 73.2
SGA_v2.0_scaffold45G17264 Striga asiatica HOM05D037617 ORTHO05D400462 8.1e-08 62.8 41 73.2
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 4.0e-07 60.5 109 33.0
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 2.6e-06 57.8 41 63.4
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 4.4e-06 57.0 76 43.4


User provided reference genes

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