Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 2.4e-136 488.8 241 100.0
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 1.8e-83 313.2 160 93.8
SGA_v2.0_scaffold250G45020 Striga asiatica HOM05D011763 ORTHO05D014257 8.4e-65 251.1 159 81.1
SGA_v2.0_scaffold60G21109 Striga asiatica HOM05D011763 ORTHO05D014257 4.6e-63 245.4 231 59.3
SGA_v2.0_scaffold250G45024 Striga asiatica HOM05D011763 ORTHO05D014257 1.5e-61 240.4 159 77.4
SGA_v2.0_scaffold250G45027 Striga asiatica HOM05D011763 ORTHO05D014257 1.5e-61 240.4 159 77.4
SGA_v2.0_scaffold56G19979 Striga asiatica HOM05D011763 ORTHO05D014257 5.6e-61 238.4 159 76.1
SGA_v2.0_scaffold60G21067 Striga asiatica HOM05D011763 ORTHO05D014257 2.5e-53 213.0 118 84.7
SGA_v2.0_scaffold60G20816 Striga asiatica HOM05D011763 ORTHO05D014257 7.6e-50 201.4 264 50.0
SGA_v2.0_scaffold1G00615 Striga asiatica HOM05D011763 ORTHO05D014257 4.6e-47 192.2 160 68.1
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 2.0e-18 97.1 157 37.6
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 2.0e-18 97.1 79 60.8
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 4.5e-18 95.9 80 60.0
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 4.5e-18 95.9 68 66.2
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 5.9e-18 95.5 79 60.8
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.0e-17 94.7 80 58.8
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.0e-17 94.7 80 57.5
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.0e-17 94.7 80 57.5
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.3e-17 94.4 151 38.4
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.9e-17 93.2 80 55.0
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 2.9e-17 93.2 80 57.5
SGA_v2.0_scaffold70G23637 Striga asiatica HOM05D011763 ORTHO05D014257 3.8e-17 92.8 157 42.0
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 8.5e-17 91.7 79 58.2
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 1.1e-16 91.3 81 58.0
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 2.5e-16 90.1 80 55.0
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 2.5e-16 90.1 80 55.0
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 2.5e-16 90.1 151 39.1
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 3.2e-16 89.7 183 31.1
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 3.2e-16 89.7 149 38.3
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 3.2e-16 89.7 151 39.1
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 4.2e-16 89.4 150 36.0
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 7.2e-16 88.6 153 34.6
SalBow8G1157 Salvia bowleyana HOM05D011763 ORTHO05D014257 9.4e-16 88.2 144 38.9
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 9.4e-16 88.2 151 35.8
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 1.2e-15 87.8 151 38.4
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 2.1e-15 87.0 84 52.4
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 2.1e-15 87.0 82 54.9
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 2.7e-15 86.7 82 54.9
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 2.7e-15 86.7 155 34.2
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.7e-15 86.7 155 34.8
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 3.6e-15 86.3 72 61.1
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 3.6e-15 86.3 79 51.9
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.6e-15 86.3 87 51.7
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 6.1e-15 85.5 76 60.5
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 8.0e-15 85.1 85 52.9
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 8.0e-15 85.1 84 51.2
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 8.0e-15 85.1 76 57.9
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 1.0e-14 84.7 155 32.3
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.0e-14 84.7 153 36.6
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.0e-14 84.7 81 54.3
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 1.4e-14 84.3 155 34.8
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.4e-14 84.3 152 33.6
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 1.8e-14 84.0 80 56.2
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 1.8e-14 84.0 81 50.6
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 1.8e-14 84.0 84 51.2
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 2.3e-14 83.6 153 35.9
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 2.3e-14 83.6 84 52.4
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 3.0e-14 83.2 85 50.6
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 3.0e-14 83.2 74 59.5
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 4.0e-14 82.8 80 55.0
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 4.0e-14 82.8 74 60.8
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 4.0e-14 82.8 82 53.7
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 5.2e-14 82.4 86 53.5
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 5.2e-14 82.4 81 53.1
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 5.2e-14 82.4 80 55.0
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 5.2e-14 82.4 80 55.0
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 5.2e-14 82.4 154 33.1
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 6.7e-14 82.0 86 48.8
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 6.7e-14 82.0 151 34.4
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 6.7e-14 82.0 87 49.4
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 8.8e-14 81.6 154 36.4
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 1.5e-13 80.9 84 52.4
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 1.5e-13 80.9 81 51.9
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 1.5e-13 80.9 81 51.9
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 3.3e-13 79.7 85 49.4
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.3e-13 79.7 85 49.4
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.3e-13 79.7 85 49.4
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.3e-13 79.7 85 49.4
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.3e-13 79.7 85 49.4
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 4.4e-13 79.3 85 48.2
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 5.7e-13 79.0 86 47.7
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 5.7e-13 79.0 83 50.6
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.7e-13 79.0 87 48.3
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 7.5e-13 78.6 82 46.3
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 7.5e-13 78.6 85 51.8
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 9.7e-13 78.2 80 52.5
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 9.7e-13 78.2 85 49.4
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 9.7e-13 78.2 80 52.5
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 9.7e-13 78.2 81 50.6
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 9.7e-13 78.2 86 48.8
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 1.3e-12 77.8 80 48.8
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 1.3e-12 77.8 82 46.3
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.3e-12 77.8 75 53.3
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 1.7e-12 77.4 78 53.8
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 3.7e-12 76.3 80 51.2
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 3.7e-12 76.3 80 51.2
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 3.7e-12 76.3 80 51.2
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 3.7e-12 76.3 80 51.2
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 3.7e-12 76.3 80 51.2
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 3.7e-12 76.3 80 51.2
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 3.7e-12 76.3 80 51.2
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 4.8e-12 75.9 83 49.4
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 6.3e-12 75.5 84 47.6
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 6.3e-12 75.5 76 47.4
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 6.3e-12 75.5 96 44.8
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 8.2e-12 75.1 80 50.0
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 8.2e-12 75.1 80 50.0
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.1e-11 74.7 66 54.5
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 1.4e-11 74.3 80 50.0
SalBow8G1306 Salvia bowleyana HOM05D011763 ORTHO05D014257 1.4e-11 74.3 118 35.6
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.4e-11 74.3 87 46.0
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 1.8e-11 73.9 78 44.9
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.8e-11 73.9 80 42.5
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 2.4e-11 73.6 80 50.0
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 3.1e-11 73.2 80 48.8
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 3.1e-11 73.2 80 50.0
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 4.1e-11 72.8 80 42.5
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 7.0e-11 72.0 80 48.8
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 2.7e-10 70.1 76 47.4
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 5.9e-10 68.9 85 44.7
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 5.9e-10 68.9 82 45.1
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 7.7e-10 68.6 104 40.4
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 2.9e-09 66.6 104 39.4
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 5.0e-09 65.9 88 44.3
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 8.5e-09 65.1 80 42.5
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.5e-08 64.3 87 43.7
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 4.2e-08 62.8 83 45.8
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 4.7e-07 59.3 57 56.1
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.0e-06 58.2 123 30.9
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.0e-06 58.2 123 30.9
SalBow8G2893 Salvia bowleyana HOM05D041342 ORTHO05D014257 3.0e-06 56.6 140 30.0
SalBow8G5061 Salvia bowleyana HOM05D041342 ORTHO05D014257 5.2e-06 55.8 140 30.0


User provided reference genes

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