Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 1.1e-150 536.6 268 100.0
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.6e-144 516.2 261 98.5
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 5.6e-102 374.8 268 68.3
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 9.9e-99 364.0 268 67.2
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.2e-93 347.1 226 72.1
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 6.2e-93 344.7 228 71.9
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 6.2e-93 344.7 269 65.1
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 3.1e-92 342.4 266 64.3
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 3.1e-92 342.4 271 64.2
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.0e-92 342.0 225 74.2
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.5e-91 340.1 243 67.1
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 2.6e-91 339.3 269 62.8
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 3.4e-91 339.0 241 70.5
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 3.4e-91 339.0 269 64.3
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 7.6e-91 337.8 268 63.1
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 9.9e-91 337.4 226 71.7
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 9.9e-91 337.4 223 71.7
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.3e-90 337.0 225 73.8
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 2.2e-90 336.3 268 64.6
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 3.8e-90 335.5 228 71.1
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.8e-90 335.5 269 63.2
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 3.8e-90 335.5 269 63.2
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.4e-90 334.7 254 67.7
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.4e-90 334.3 223 71.7
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 1.1e-89 334.0 222 70.3
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.9e-89 333.2 254 66.9
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.9e-89 333.2 222 70.7
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 2.4e-89 332.8 230 69.6
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 3.2e-89 332.4 273 60.8
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 5.4e-89 331.6 222 70.3
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 7.1e-89 331.3 236 69.9
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 7.1e-89 331.3 222 70.3
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 7.1e-89 331.3 222 70.7
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.3e-89 330.9 207 75.4
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 9.3e-89 330.9 220 71.4
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.6e-88 330.1 254 66.9
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.6e-88 330.1 269 62.1
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 6.0e-88 328.2 224 69.6
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 7.8e-88 327.8 223 68.6
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 7.8e-88 327.8 226 68.1
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.0e-87 327.4 223 70.4
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 1.0e-87 327.4 223 70.4
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.0e-87 327.4 237 67.1
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.0e-87 327.4 251 64.5
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.0e-87 325.9 223 70.0
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 3.0e-87 325.9 215 72.1
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 3.9e-87 325.5 223 70.9
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 3.9e-87 325.5 223 70.9
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 1.5e-86 323.6 221 70.6
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.5e-86 323.6 215 71.2
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 3.3e-86 322.4 207 73.9
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 3.3e-86 322.4 226 69.0
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.3e-86 322.0 237 67.9
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 4.3e-86 322.0 224 70.1
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 5.6e-86 321.6 222 69.4
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 5.6e-86 321.6 223 68.2
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 5.6e-86 321.6 222 68.9
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 5.6e-86 321.6 221 68.8
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.6e-86 321.6 235 67.7
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 7.3e-86 321.2 270 60.7
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 7.3e-86 321.2 222 68.5
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 7.3e-86 321.2 218 69.7
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.6e-86 320.9 207 73.9
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 1.3e-85 320.5 226 66.4
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.6e-85 320.1 226 69.0
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 2.1e-85 319.7 219 70.8
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 2.8e-85 319.3 251 64.1
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 2.8e-85 319.3 253 64.4
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 3.6e-85 318.9 223 67.7
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 4.8e-85 318.5 214 69.2
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 8.1e-85 317.8 222 68.5
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 4.0e-84 315.5 218 68.8
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 6.9e-84 314.7 224 65.6
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 9.0e-84 314.3 251 61.4
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.2e-83 313.9 224 69.2
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.5e-83 313.5 252 61.1
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.6e-83 312.8 253 60.5
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.4e-83 312.4 253 60.5
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 3.4e-83 312.4 248 63.3
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.5e-83 312.0 214 68.2
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 4.5e-83 312.0 223 66.8
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 9.9e-83 310.8 204 72.5
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.3e-82 310.5 215 68.8
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.7e-82 310.1 223 66.8
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.7e-82 310.1 226 64.6
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.7e-82 310.1 205 73.2
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 2.2e-82 309.7 205 71.7
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 2.9e-82 309.3 223 66.8
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 4.9e-82 308.5 264 60.6
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.9e-82 308.5 275 57.5
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 1.1e-81 307.4 224 67.9
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.1e-81 307.4 218 66.1
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 1.4e-81 307.0 220 66.8
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 3.2e-81 305.8 230 66.5
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.1e-80 303.1 230 63.0
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 3.5e-80 302.4 224 67.0
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 3.5e-80 302.4 253 60.1
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 4.6e-80 302.0 224 66.1
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.0e-79 299.3 204 72.1
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.8e-76 290.0 204 68.1
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.8e-76 290.0 215 65.1
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.4e-76 289.7 215 65.1
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 2.0e-75 286.6 251 57.8
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.6e-75 286.2 246 62.2
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 3.8e-74 282.3 197 66.5
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 4.9e-74 282.0 224 59.8
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.1e-73 280.8 196 68.4
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.1e-73 280.8 245 56.3
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 4.2e-73 278.9 197 69.5
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 3.5e-72 275.8 259 54.1
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 8.7e-71 271.2 244 55.3
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.1e-68 264.2 199 62.3
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.1e-68 264.2 215 58.6
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 2.2e-66 256.5 262 49.6
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.9e-65 253.4 214 57.0
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.3e-61 240.7 163 71.2
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.6e-61 240.4 225 53.3
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 3.8e-58 229.2 182 64.3
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 5.5e-57 225.3 210 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 6.1e-56 221.9 209 51.2
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 8.2e-53 211.5 230 43.0
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 1.1e-52 211.1 199 52.3
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.4e-52 210.7 197 59.4
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.8e-47 193.7 200 51.5
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 8.8e-47 191.4 237 39.2
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 1.1e-46 191.0 130 69.2
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 1.1e-44 184.5 153 61.4
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.0e-39 167.9 212 40.6
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 7.4e-38 161.8 109 70.6
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.2e-27 127.9 85 69.4
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.6e-27 127.5 130 54.6
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 3.5e-27 126.3 138 49.3
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 6.5e-26 122.1 88 69.3
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 4.4e-22 109.4 144 39.6
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 4.1e-20 102.8 91 51.6
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 4.2e-17 92.8 64 68.8
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 3.7e-13 79.7 87 50.6
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 7.0e-12 75.5 246 27.6
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 6.6e-10 68.9 60 63.3
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 4.3e-09 66.2 59 55.9
SGA_v2.0_scaffold250G44986 Striga asiatica HOM05D005616 ORTHO05D403636 2.3e-07 60.5 33 75.8


User provided reference genes

Program Settings