Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 0.0e+00 1090.1 535 100.0
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 3.5e-273 944.5 518 91.1
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.1e-253 879.8 522 83.9
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.9e-218 762.7 535 70.1
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 2.5e-218 762.3 531 70.8
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.3e-202 708.8 677 56.0
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.0e-200 703.7 532 66.7
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 2.2e-198 696.0 531 65.5
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.6e-194 681.4 525 64.0
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.3e-194 681.0 531 64.2
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 9.5e-194 680.6 505 65.0
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 6.2e-193 677.9 533 63.8
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.1e-192 677.2 531 62.5
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.4e-192 676.8 497 66.0
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 3.1e-192 675.6 527 63.8
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 5.2e-192 674.9 562 61.4
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.6e-191 672.5 540 62.4
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 3.4e-191 672.2 518 62.9
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.4e-191 671.8 582 58.6
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 9.9e-191 670.6 508 63.8
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.1e-189 667.2 517 63.1
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 5.4e-189 664.8 526 62.5
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 9.2e-189 664.1 524 61.6
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 9.2e-189 664.1 533 62.7
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 5.1e-187 658.3 524 62.4
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.1e-186 657.1 529 62.4
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.1e-186 657.1 509 61.9
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.9e-186 656.4 508 62.2
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 4.3e-186 655.2 529 60.3
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 4.3e-186 655.2 496 64.5
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 4.3e-186 655.2 523 62.1
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 5.6e-186 654.8 533 61.2
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.2e-185 653.7 520 61.9
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.6e-185 653.3 533 61.7
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.1e-185 652.9 514 63.2
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.8e-185 652.5 525 61.7
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 4.7e-185 651.7 531 61.0
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 6.2e-185 651.4 494 62.8
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.8e-184 649.8 498 62.9
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 6.8e-184 647.9 508 61.8
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.9e-184 647.5 555 59.8
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 8.9e-184 647.5 494 64.0
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 2.0e-183 646.4 498 61.8
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.6e-183 646.0 527 60.5
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 3.4e-183 645.6 483 64.2
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 3.4e-183 645.6 500 63.8
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.4e-183 645.2 555 59.5
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 4.4e-183 645.2 494 63.8
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 5.8e-183 644.8 524 59.7
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 7.6e-183 644.4 528 60.0
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.3e-182 643.7 515 61.6
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 1.3e-182 643.7 524 61.5
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.3e-182 643.7 519 60.7
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 2.9e-182 642.5 531 59.7
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 2.9e-182 642.5 529 61.2
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 6.4e-182 641.3 524 59.5
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 3.2e-181 639.0 523 60.2
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.2e-181 639.0 524 59.7
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.2e-181 639.0 524 59.7
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.1e-181 637.9 524 59.4
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.2e-181 637.5 503 61.2
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.6e-180 636.7 522 59.6
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.6e-180 636.7 527 59.0
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 2.7e-180 636.0 463 67.8
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.7e-180 636.0 515 60.6
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 3.5e-180 635.6 477 64.2
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.3e-179 633.6 530 59.2
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.7e-179 633.3 500 60.8
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 2.3e-179 632.9 505 62.2
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 5.1e-179 631.7 511 61.6
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 6.6e-179 631.3 528 59.5
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.1e-178 630.6 521 59.1
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 2.5e-178 629.4 519 59.2
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.6e-177 625.5 507 60.7
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 6.2e-177 624.8 526 58.7
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 8.1e-177 624.4 498 61.0
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.4e-176 623.6 503 59.0
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.8e-176 623.2 487 62.0
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 6.9e-176 621.3 544 56.1
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 1.2e-175 620.5 526 58.4
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 2.0e-175 619.8 499 60.5
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 2.6e-175 619.4 526 57.8
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 3.4e-175 619.0 522 58.8
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 4.4e-175 618.6 531 57.3
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 5.8e-175 618.2 517 58.0
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.4e-173 613.6 537 56.8
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.9e-173 613.2 527 56.9
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.9e-173 613.2 459 65.1
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.4e-173 612.8 543 57.5
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.2e-173 612.5 525 56.6
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 3.2e-173 612.5 497 59.2
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 5.4e-173 611.7 531 56.9
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 7.1e-173 611.3 537 56.6
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 6.0e-172 608.2 537 56.4
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.7e-171 606.7 537 56.1
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.7e-171 604.4 450 66.2
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.5e-170 603.6 529 57.7
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.5e-170 603.6 529 57.7
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.5e-170 603.6 529 57.7
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.9e-170 603.2 529 57.3
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 3.3e-170 602.4 529 57.3
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 5.6e-170 601.7 489 58.7
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 7.3e-170 601.3 529 56.5
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 4.8e-169 598.6 530 55.7
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.1e-168 597.4 462 64.7
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.4e-168 596.3 414 69.6
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 6.9e-168 594.7 525 57.0
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 1.5e-167 593.6 529 56.0
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.6e-167 592.8 498 58.8
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 5.8e-167 591.7 543 54.9
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 5.8e-167 591.7 531 56.3
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 5.8e-167 591.7 549 55.7
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 3.8e-166 589.0 531 56.1
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.8e-166 589.0 483 60.9
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 6.4e-166 588.2 524 55.0
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 1.2e-164 583.9 509 55.8
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 2.1e-164 583.2 622 48.9
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.5e-164 582.4 502 58.0
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.3e-163 580.5 494 57.9
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 7.4e-162 574.7 534 54.7
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.3e-161 573.9 512 56.6
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.2e-159 567.4 476 59.0
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 2.6e-159 566.2 538 54.1
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 3.4e-159 565.8 539 54.2
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 3.4e-159 565.8 527 54.6
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.8e-158 562.4 525 55.8
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.1e-157 560.8 474 58.9
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.9e-157 560.1 506 54.3
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.1e-156 556.6 467 57.8
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 9.6e-154 547.7 537 53.1
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.8e-153 545.4 469 57.4
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.1e-152 544.3 472 58.5
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.0e-147 527.7 515 53.4
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 8.7e-147 524.6 457 56.5
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 7.2e-133 478.4 505 51.5
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 9.4e-133 478.0 402 60.7
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.1e-130 471.1 505 46.7
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 4.8e-129 465.7 522 45.2
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.8e-129 465.7 373 62.7
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 2.1e-124 450.3 492 46.1
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.1e-122 444.5 477 50.3
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.1e-120 438.0 441 48.5
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.9e-119 432.2 309 69.9
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.8e-107 394.0 560 40.2
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 3.7e-105 386.3 243 82.3
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 2.3e-99 367.1 386 51.3
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 6.1e-92 342.4 213 75.6
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.9e-88 330.9 372 47.0
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.0e-62 243.8 207 58.5
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.5e-45 188.3 926 23.3
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 9.0e-43 179.1 198 48.0
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 3.0e-38 164.1 99 75.8
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 2.8e-36 157.5 106 68.9
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 1.5e-34 151.8 474 28.5
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.0e-33 149.1 149 53.7
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 6.5e-33 146.4 97 70.1
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.9e-30 137.1 118 61.0
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 5.1e-30 136.7 108 63.9
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 4.5e-26 123.6 149 46.3
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 3.2e-24 117.5 78 67.9
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.8e-22 109.4 118 54.2
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.5e-21 107.8 70 70.0
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 5.7e-21 106.7 125 46.4
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 3.1e-19 100.9 78 60.3
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.9e-18 96.7 61 72.1
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 2.5e-16 91.3 67 68.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 4.1e-11 73.9 46 71.7
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 1.3e-09 68.9 46 63.0
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 3.8e-09 67.4 79 46.8
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.2e-08 63.2 68 45.6
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 2.1e-07 61.6 36 77.8
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.4e-06 58.9 42 59.5
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 3.0e-06 57.8 35 57.1


User provided reference genes

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