Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 0.0e+00 1449.1 703 100.0
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 9.6e-312 1073.2 723 72.1
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.3e-301 1037.3 724 70.4
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.3e-291 1006.1 716 69.4
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.8e-291 1004.6 716 69.1
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.8e-280 969.1 720 66.2
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.1e-263 913.3 719 61.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.6e-263 912.1 719 61.8
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 4.4e-263 911.4 720 61.9
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 7.4e-263 910.6 720 61.7
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.7e-262 909.4 722 61.9
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.2e-262 909.1 720 62.9
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.4e-261 906.4 666 67.9
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 5.0e-259 897.9 718 61.6
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.1e-258 896.7 698 63.0
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 7.0e-253 877.5 718 61.0
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.2e-252 876.7 688 61.6
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 8.5e-251 870.5 679 61.7
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.4e-248 863.2 686 61.1
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 9.8e-247 857.1 725 58.3
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.3e-246 856.7 690 59.6
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.2e-246 855.9 683 60.3
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 3.7e-246 855.1 723 58.2
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 4.1e-245 851.7 666 62.0
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.6e-244 849.7 702 59.5
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.6e-244 849.7 724 57.3
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.5e-244 848.2 690 60.3
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 5.9e-244 847.8 724 57.9
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.2e-243 845.9 673 61.1
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.9e-243 845.5 670 61.6
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.0e-243 844.7 670 61.8
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 9.4e-242 840.5 670 61.5
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 2.7e-241 839.0 704 58.2
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.0e-240 837.0 599 65.6
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 3.0e-240 835.5 728 56.0
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 5.2e-240 834.7 727 58.2
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.2e-240 834.7 690 59.1
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.2e-239 833.6 714 56.9
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.5e-239 833.2 680 58.8
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.2e-238 829.3 668 59.3
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.1e-237 827.0 666 58.7
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.8e-237 826.2 674 59.8
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.9e-236 821.2 712 57.3
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 7.7e-236 820.8 728 54.8
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.0e-235 820.5 676 58.6
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.3e-235 820.1 681 58.3
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.7e-235 819.7 667 59.2
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.7e-235 819.7 660 60.5
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 6.6e-235 817.8 705 55.5
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.9e-234 816.2 671 59.0
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.3e-234 815.5 667 60.1
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.2e-233 813.5 725 55.9
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.2e-233 813.5 682 58.2
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.6e-233 813.1 676 59.9
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.3e-232 809.3 652 60.4
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 4.0e-232 808.5 681 59.8
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.2e-231 807.0 705 56.9
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.7e-231 804.7 671 58.7
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 5.7e-231 804.7 707 57.9
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 7.5e-231 804.3 667 57.7
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.2e-230 802.7 708 55.9
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 3.7e-230 802.0 676 58.3
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.8e-229 799.7 708 55.8
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.4e-229 799.3 701 56.1
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 4.1e-229 798.5 678 57.8
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 7.0e-229 797.7 676 58.3
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 7.0e-229 797.7 712 56.7
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 7.8e-228 794.3 692 55.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.9e-227 792.3 690 57.5
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.9e-226 789.6 714 55.9
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.9e-226 789.6 682 57.2
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.8e-225 785.8 700 56.9
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 8.0e-225 784.3 588 65.6
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.2e-223 780.4 678 58.0
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.9e-221 773.1 683 56.1
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.0e-219 767.3 728 52.5
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.9e-219 765.4 682 55.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 3.9e-219 765.4 685 55.8
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.5e-218 762.7 594 62.8
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.7e-217 758.4 678 56.6
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.8e-216 754.6 706 53.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.8e-216 754.6 630 59.0
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.1e-212 743.0 675 53.3
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 3.5e-212 742.3 889 45.7
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.5e-210 736.1 621 57.6
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 4.3e-210 735.3 675 53.3
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.6e-210 734.9 671 52.3
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.4e-208 730.3 689 52.8
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.3e-208 729.6 677 52.6
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.3e-208 729.6 685 53.0
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.5e-207 726.9 671 52.9
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 5.8e-207 724.9 672 52.5
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 5.8e-207 724.9 673 52.5
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 5.8e-207 724.9 672 52.5
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.7e-206 723.4 672 52.2
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 6.4e-206 721.5 708 50.0
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.1e-205 720.7 711 51.8
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.9e-205 719.9 690 53.2
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 5.4e-205 718.4 653 54.4
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 5.4e-205 718.4 703 51.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 9.2e-205 717.6 672 51.6
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.6e-204 716.8 679 53.8
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.6e-204 716.8 685 51.7
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.7e-204 716.1 685 52.1
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.3e-203 713.0 703 50.5
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.0e-203 712.6 678 51.5
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 6.6e-203 711.4 720 52.6
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.5e-202 709.5 716 51.3
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 5.6e-202 708.4 673 51.6
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.6e-201 706.8 664 55.0
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.0e-199 699.9 703 50.2
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 7.6e-199 698.0 704 50.1
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 4.2e-197 692.2 718 49.4
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-196 690.6 661 54.3
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.0e-195 686.0 729 50.6
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 8.7e-195 684.5 671 52.5
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 3.3e-194 682.6 679 51.3
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.1e-193 679.9 771 45.8
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.8e-193 679.5 665 52.8
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.4e-192 677.2 529 63.1
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.8e-192 676.8 701 50.4
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.9e-192 674.9 758 48.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.6e-191 672.9 691 51.4
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-183 646.7 685 49.3
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 7.6e-183 644.8 638 50.9
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 7.6e-183 644.8 722 48.1
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.3e-171 606.7 684 46.3
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 9.0e-168 594.7 524 56.9
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 7.4e-162 575.1 679 45.2
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 8.2e-161 571.6 710 45.1
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.2e-156 557.8 562 51.4
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.2e-140 504.6 540 47.2
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 2.4e-136 490.3 394 59.9
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 3.5e-127 459.9 427 51.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 5.9e-127 459.1 339 63.1
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.1e-120 436.8 385 54.8
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 5.7e-114 416.0 288 66.0
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.4e-99 368.2 405 48.1
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 4.0e-99 366.7 409 44.5
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 4.0e-99 366.7 219 77.6
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.2e-97 360.9 457 43.1
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 3.2e-88 330.5 567 34.2
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 4.3e-85 320.1 326 52.5
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 4.7e-84 316.6 544 34.0
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 9.9e-82 308.9 311 46.6
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 9.9e-82 308.9 572 33.6
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 2.0e-58 231.5 165 64.8
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 5.7e-53 213.4 146 69.2
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 7.4e-53 213.0 188 56.9
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.5e-50 205.3 206 51.5
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.5e-48 198.0 134 68.7
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 7.9e-47 193.0 224 45.1
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 2.5e-45 188.0 246 43.5
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.1e-43 181.0 207 46.9
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 5.1e-38 163.7 204 46.1
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.3e-36 159.1 403 30.3
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-33 148.3 99 68.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-33 148.3 99 68.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-33 148.3 99 68.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 4.7e-31 140.6 177 40.7
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 3.8e-25 120.9 135 44.4
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 3.3e-21 107.8 246 30.5
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.8e-20 104.8 266 30.1
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 4.1e-19 100.9 248 28.2
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.0e-17 96.3 59 69.5
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.9e-16 92.0 74 60.8
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.2e-14 84.0 179 33.5
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 8.8e-14 83.2 231 29.4
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.2e-13 82.8 147 32.7
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.8e-12 78.2 48 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.8e-12 78.2 48 66.7
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.7e-09 68.9 46 67.4


User provided reference genes

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