Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20923 Striga asiatica HOM05D002433 ORTHO05D019117 1.8e-57 225.7 112 100.0
SGA_v2.0_scaffold12G06067 Striga asiatica HOM05D002433 ORTHO05D019117 1.7e-31 139.4 76 90.8
SGA_v2.0_scaffold52G18991 Striga asiatica HOM05D002433 ORTHO05D019117 4.1e-30 134.8 76 88.2
SGA_v2.0_scaffold59G20745 Striga asiatica HOM05D002433 ORTHO05D019117 5.3e-30 134.4 73 91.8
SGA_v2.0_scaffold59G20627 Striga asiatica HOM05D002433 ORTHO05D019117 6.9e-30 134.0 73 91.8
SGA_v2.0_scaffold122G33349 Striga asiatica HOM05D002433 ORTHO05D003234 1.0e-20 103.6 91 61.5
Cc04_g01530 Coffea canephora HOM05D002433 ORTHO05D003234 2.3e-17 92.4 95 55.8
MSTRG.10967 Avicennia marina HOM05D002433 ORTHO05D003234 1.5e-16 89.7 94 54.3
SGA_v2.0_scaffold71G23836 Striga asiatica HOM05D002433 ORTHO05D003234 1.5e-16 89.7 95 57.9
Oeu058714.2 Olea europaea HOM05D002433 ORTHO05D003234 4.4e-16 88.2 98 53.1
MSTRG.22558 Avicennia marina HOM05D002433 ORTHO05D003234 7.5e-16 87.4 93 52.7
Dinv37886 Davidia involucrata HOM05D002433 ORTHO05D003234 7.5e-16 87.4 99 52.5
Oeu007570.1 Olea europaea HOM05D002433 ORTHO05D003234 2.2e-15 85.9 96 51.0
SGA_v2.0_scaffold62G21420 Striga asiatica HOM05D000133 ORTHO05D006262 4.8e-15 84.7 44 97.7
Migut.I01056 Erythranthe guttata HOM05D002433 ORTHO05D003234 8.2e-15 84.0 96 51.0
Nn8g38753 Nelumbo nucifera HOM05D002433 ORTHO05D003234 1.4e-14 83.2 88 54.5
Aqoxy7G01127 Aquilegia oxysepala HOM05D002433 ORTHO05D003234 3.1e-14 82.0 121 45.5
Dinv30368 Davidia involucrata HOM05D002433 ORTHO05D003234 4.1e-14 81.6 99 49.5
Nn6g35561 Nelumbo nucifera HOM05D002433 ORTHO05D003234 4.1e-14 81.6 82 53.7
SGA_v2.0_scaffold51G18654 Striga asiatica HOM05D002433 ORTHO05D019117 5.3e-14 81.3 51 78.4
VMungo1080G1021 Vigna mungo HOM05D002433 ORTHO05D003234 7.0e-14 80.9 102 50.0
Actinidia21783 Actinidia chinensis HOM05D002433 ORTHO05D016425 9.1e-14 80.5 99 51.5
Nitab4.5_0002795g0060 Nicotiana tabacum HOM05D002433 ORTHO05D003234 1.6e-13 79.7 94 45.7
Nitab4.5_0011681g0010 Nicotiana tabacum HOM05D002433 ORTHO05D003234 1.6e-13 79.7 94 45.7
CSS0024216 Camellia sinensis var. sinensis HOM05D002433 ORTHO05D003234 2.0e-13 79.3 78 52.6
Peaxi162Scf00038g01712 Petunia axillaris HOM05D002433 ORTHO05D003234 2.0e-13 79.3 96 46.9
Actinidia32170 Actinidia chinensis HOM05D002433 ORTHO05D003234 2.7e-13 79.0 108 49.1
Lalb_Chr14g0372641 Lupinus albus HOM05D002433 ORTHO05D003234 2.7e-13 79.0 81 54.3
TAR623G0996 Trochodendron aralioides HOM05D002433 ORTHO05D003234 2.7e-13 79.0 99 47.5
TAR636G1280 Trochodendron aralioides HOM05D002433 ORTHO05D003234 2.7e-13 79.0 99 47.5
Hma1.2p1_0291F.1_g115320 Hydrangea macrophylla HOM05D002433 ORTHO05D003234 3.5e-13 78.6 100 48.0
Hma1.2p1_0169F.1_g074780 Hydrangea macrophylla HOM05D002433 ORTHO05D003234 7.7e-13 77.4 95 50.5
Solyc03g121910.1 Solanum lycopersicum HOM05D002433 ORTHO05D003234 7.7e-13 77.4 92 47.8
Sopen03g040730 Solanum pennellii HOM05D002433 ORTHO05D003234 7.7e-13 77.4 92 47.8
PGSC0003DMG400002486 Solanum tuberosum HOM05D002433 ORTHO05D003234 1.0e-12 77.0 92 47.8
ECA246G2497 Erigeron canadensis HOM05D002433 ORTHO05D003234 1.7e-12 76.3 95 47.4
TAR624G0265 Trochodendron aralioides HOM05D002433 ORTHO05D003234 2.9e-12 75.5 85 50.6
Glyma.13G347100 Glycine max HOM05D002433 ORTHO05D003234 3.8e-12 75.1 88 52.3
Lsat_1_v5_gn_5_21680 Lactuca sativa HOM05D002433 ORTHO05D003234 5.0e-12 74.7 78 52.6
CAN.G862.21 Capsicum annuum HOM05D002433 ORTHO05D003234 8.5e-12 73.9 93 45.2
Peaxi162Scf00207g01429 Petunia axillaris HOM05D002433 ORTHO05D003234 8.5e-12 73.9 96 43.8
Sed0018623 Sechium edule HOM05D002433 ORTHO05D003234 8.5e-12 73.9 79 51.9
DCAR_007633 Daucus carota HOM05D002433 ORTHO05D003234 1.1e-11 73.6 96 47.9
Phvul.005G156300 Phaseolus vulgaris HOM05D002433 ORTHO05D003234 1.1e-11 73.6 109 45.0
EL10Ac7g17640 Beta vulgaris HOM05D002433 ORTHO05D003234 1.5e-11 73.2 78 52.6
CAN.G825.21 Capsicum annuum HOM05D002433 ORTHO05D003234 1.5e-11 73.2 78 48.7
CSS0008835 Camellia sinensis var. sinensis HOM05D002433 ORTHO05D003234 1.9e-11 72.8 99 48.5
TPR.G6603 Trifolium pratense HOM05D002433 ORTHO05D003234 1.9e-11 72.8 78 53.8
MD15G1212700 Malus domestica HOM05D002433 ORTHO05D003234 2.5e-11 72.4 79 51.9
Nitab4.5_0007560g0020 Nicotiana tabacum HOM05D002433 ORTHO05D003234 2.5e-11 72.4 96 44.8
unitig_62.g23761 Utricularia gibba HOM05D002433 ORTHO05D003234 2.5e-11 72.4 86 46.5
Cpa.g.sc25.90 Carica papaya HOM05D002433 ORTHO05D003234 3.2e-11 72.0 80 52.5
Ca_01229_v3 Cicer arietinum L. HOM05D002433 ORTHO05D003234 3.2e-11 72.0 78 55.1
CDE05G1376 Ceratophyllum demersum HOM05D002433 ORTHO05D003234 4.2e-11 71.6 93 47.3
Lj9P521T29 Lonicera japonica HOM05D002433 ORTHO05D003234 4.2e-11 71.6 80 51.2
Solyc06g062840.4 Solanum lycopersicum HOM05D002433 ORTHO05D003234 4.2e-11 71.6 104 40.4
Sopen06g022300 Solanum pennellii HOM05D002433 ORTHO05D003234 4.2e-11 71.6 104 40.4
PGSC0003DMG400004886 Solanum tuberosum HOM05D002433 ORTHO05D003234 4.2e-11 71.6 104 40.4
Medtr2g099510 Medicago truncatula HOM05D002433 ORTHO05D003234 5.5e-11 71.2 76 55.3
Manes.16G098600 Manihot esculenta HOM05D002433 ORTHO05D003234 7.2e-11 70.9 99 49.5
Oeu047968.1 Olea europaea HOM05D002433 ORTHO05D019117 7.2e-11 70.9 81 50.6
PGR102G1947 Punica granatum HOM05D002433 ORTHO05D003234 7.2e-11 70.9 82 51.2
Glyma.15G027000 Glycine max HOM05D002433 ORTHO05D003234 1.2e-10 70.1 87 50.6
CsaV3_1G040720 Cucumis sativus L. HOM05D002433 ORTHO05D003234 1.6e-10 69.7 103 43.7
Rhsim05G0013800 Rhododendron simsii HOM05D002433 ORTHO05D003234 1.6e-10 69.7 92 44.6
ATR0051G050 Amborella trichopoda HOM05D002433 ORTHO05D003234 2.1e-10 69.3 90 46.7
Haze_15998 Corylus avellana HOM05D002433 ORTHO05D003234 2.7e-10 68.9 98 48.0
Rhsim08G0236700 Rhododendron simsii HOM05D002433 ORTHO05D003234 2.7e-10 68.9 81 50.6
TWI32G1360 Tripterygium wilfordii HOM05D002433 ORTHO05D003234 2.7e-10 68.9 78 51.3
Aa31LG4G3150 Aethionema arabicum HOM05D002433 ORTHO05D003234 3.6e-10 68.6 89 46.1
Sc02g0004340 Simmondsia chinensis HOM05D002433 ORTHO05D003234 3.6e-10 68.6 79 46.8
unitig_52.g17098 Utricularia gibba HOM05D002433 ORTHO05D003234 4.7e-10 68.2 86 45.3
arahy.Tifrunner.gnm1.ann1.TTHG3F Arachis hypogaea HOM05D002433 ORTHO05D003234 6.1e-10 67.8 94 46.8
arahy.Tifrunner.gnm1.ann1.ZW77VX Arachis hypogaea HOM05D002433 ORTHO05D003234 6.1e-10 67.8 94 46.8
CDE05G0453 Ceratophyllum demersum HOM05D002433 ORTHO05D003234 6.1e-10 67.8 92 47.8
COL.COLO4_18149 Corchorus olitorius HOM05D002433 ORTHO05D003234 6.1e-10 67.8 103 48.5
Cfa003550 Carpinus fangiana HOM05D002433 ORTHO05D003234 8.0e-10 67.4 98 46.9
SGA_v2.0_scaffold24G10402 Striga asiatica HOM05D002433 ORTHO05D403451 8.0e-10 67.4 47 78.7
Gohir.A06G074501 Gossypium hirsutum HOM05D002433 ORTHO05D003234 1.0e-09 67.0 98 46.9
Gohir.D06G073200 Gossypium hirsutum HOM05D002433 ORTHO05D003234 1.0e-09 67.0 101 45.5
CARHR065720 Cardamine hirsuta HOM05D002433 ORTHO05D003234 1.8e-09 66.2 95 43.2
Ah.15g092780 Amaranthus hybridus HOM05D002433 ORTHO05D003234 2.3e-09 65.9 71 49.3
BcaC04g22857 Brassica carinata HOM05D002433 ORTHO05D003234 2.3e-09 65.9 97 44.3
BolC9t54359H Brassica oleracea HOM05D002433 ORTHO05D003234 2.3e-09 65.9 97 44.3
MELO3C016527.2 Cucumis melo HOM05D002433 ORTHO05D016425 2.3e-09 65.9 103 43.7
Gorai.010G085500 Gossypium raimondii HOM05D002433 ORTHO05D003234 2.3e-09 65.9 101 46.5
Dinv42354 Davidia involucrata HOM05D002433 ORTHO05D003234 3.0e-09 65.5 108 40.7
Lalb_Chr12g0199971 Lupinus albus HOM05D002433 ORTHO05D003234 3.0e-09 65.5 70 48.6
QL02p061713 Quercus lobata HOM05D002433 ORTHO05D003234 5.2e-09 64.7 81 46.9
vmacro22220 Vaccinium macrocarpon HOM05D002433 ORTHO05D003234 5.2e-09 64.7 80 47.5
Gohir.A05G032400 Gossypium hirsutum HOM05D002433 ORTHO05D003234 6.8e-09 64.3 79 50.6
Gohir.D05G033800 Gossypium hirsutum HOM05D002433 ORTHO05D003234 6.8e-09 64.3 79 50.6
Gorai.009G034200 Gossypium raimondii HOM05D002433 ORTHO05D003234 6.8e-09 64.3 79 50.6
Sp5g27850 Schrenkiella parvula HOM05D002433 ORTHO05D003234 6.8e-09 64.3 93 44.1
Thecc.09G082400 Theobroma cacao HOM05D002433 ORTHO05D003234 6.8e-09 64.3 103 46.6
CiPaw.02G137400 Carya illinoinensis HOM05D002433 ORTHO05D003234 8.8e-09 63.9 80 51.2
Thhalv10018411m.g Eutrema salsugineum HOM05D002433 ORTHO05D003234 8.8e-09 63.9 107 43.0
FvH4_1g08110 Fragaria vesca HOM05D002433 ORTHO05D003234 8.8e-09 63.9 94 45.7
HanXRQChr12g0359681 Helianthus annuus HOM05D002433 ORTHO05D003234 8.8e-09 63.9 75 48.0
CiPaw.01G221400 Carya illinoinensis HOM05D002433 ORTHO05D003234 1.2e-08 63.5 96 46.9
ClCG03G015330 Citrullus lanatus HOM05D002433 ORTHO05D003234 1.2e-08 63.5 100 41.0
Duzib187G0335 Durio zibethinus HOM05D002433 ORTHO05D003234 1.2e-08 63.5 98 44.9
FAN19G0473 Fragaria x ananassa HOM05D002433 ORTHO05D003234 1.2e-08 63.5 101 46.5
Duzib168G0291 Durio zibethinus HOM05D002433 ORTHO05D003234 2.0e-08 62.8 79 50.6
Sed0003791 Sechium edule HOM05D002433 ORTHO05D003234 2.0e-08 62.8 108 42.6
AL2G32500 Arabidopsis lyrata HOM05D002433 ORTHO05D003234 2.6e-08 62.4 96 44.8
FAN18G0462 Fragaria x ananassa HOM05D002433 ORTHO05D003234 2.6e-08 62.4 87 44.8
FAN26G1431 Fragaria x ananassa HOM05D002433 ORTHO05D003234 2.6e-08 62.4 101 47.5
VMungo1215G0297 Vigna mungo HOM05D002433 ORTHO05D003234 3.4e-08 62.0 100 46.0
C09p14550 Brassica napus HOM05D002433 ORTHO05D003234 5.7e-08 61.2 97 42.3
FAN26G2727 Fragaria x ananassa HOM05D002433 ORTHO05D003234 5.7e-08 61.2 101 47.5
CARHR237740 Cardamine hirsuta HOM05D002433 ORTHO05D003234 7.5e-08 60.8 94 46.8
HanXRQChr02g0031501 Helianthus annuus HOM05D002433 ORTHO05D003234 7.5e-08 60.8 75 46.7
PSO782G3829 Papaver somniferum HOM05D002433 ORTHO05D003234 7.5e-08 60.8 74 41.9
QL05p009200 Quercus lobata HOM05D002433 ORTHO05D003234 7.5e-08 60.8 82 51.2
RcHm_v2.0_Chr2g0094161 Rosa chinensis HOM05D002433 ORTHO05D003234 7.5e-08 60.8 98 45.9
A09p12340 Brassica napus HOM05D002433 ORTHO05D003234 9.8e-08 60.5 73 46.6
BraA09t36878Z Brassica rapa HOM05D002433 ORTHO05D003234 9.8e-08 60.5 73 46.6
Carub.0002s1965 Capsella rubella HOM05D002433 ORTHO05D003234 1.3e-07 60.1 108 41.7
Eucgr.C00846 Eucalyptus grandis HOM05D002433 ORTHO05D003234 1.3e-07 60.1 96 41.7
Aqoxy7G00607 Aquilegia oxysepala HOM05D002433 ORTHO05D003234 1.7e-07 59.7 57 52.6
MD17G1171300 Malus domestica HOM05D002433 ORTHO05D003234 1.7e-07 59.7 73 49.3
Atru.chr5.2876 Acer truncatum HOM05D002433 ORTHO05D003234 2.2e-07 59.3 73 45.2
Aa31LG2G20700 Aethionema arabicum HOM05D002433 ORTHO05D003234 2.2e-07 59.3 97 45.4
BcaB07g31612 Brassica carinata HOM05D002433 ORTHO05D003234 2.2e-07 59.3 74 45.9
BcaNung06772 Brassica carinata HOM05D002433 ORTHO05D003234 2.2e-07 59.3 72 47.2
FAN28G0328 Fragaria x ananassa HOM05D002433 ORTHO05D003234 2.2e-07 59.3 101 45.5
Phvul.003G133700 Phaseolus vulgaris HOM05D002433 ORTHO05D003234 2.2e-07 59.3 72 50.0
BolC2t09082H Brassica oleracea HOM05D002433 ORTHO05D003234 2.8e-07 58.9 95 42.1
Thhalv10024890m.g Eutrema salsugineum HOM05D002433 ORTHO05D003234 2.8e-07 58.9 76 50.0
MELO3C008386.2 Cucumis melo HOM05D002433 ORTHO05D016425 3.7e-07 58.5 103 39.8
CANSAT56G3231 Cannabis sativa HOM05D002433 ORTHO05D003234 4.8e-07 58.2 88 44.3
CANSAT56G3542 Cannabis sativa HOM05D002433 ORTHO05D003234 4.8e-07 58.2 88 44.3
Manes.11G022700 Manihot esculenta HOM05D002433 ORTHO05D003234 4.8e-07 58.2 99 39.4
PSO478G2384 Papaver somniferum HOM05D002433 ORTHO05D003234 4.8e-07 58.2 70 42.9
THA.LOC104820013 Tarenaya hassleriana HOM05D002433 ORTHO05D003234 4.8e-07 58.2 77 48.1
BcaC03g15421 Brassica carinata HOM05D002433 ORTHO05D003234 6.3e-07 57.8 82 43.9
A02p18290 Brassica napus HOM05D002433 ORTHO05D003234 6.3e-07 57.8 82 43.9
C02p30320 Brassica napus HOM05D002433 ORTHO05D003234 6.3e-07 57.8 82 43.9
BraA02t06868Z Brassica rapa HOM05D002433 ORTHO05D003234 6.3e-07 57.8 82 43.9
Sp3g32740 Schrenkiella parvula HOM05D002433 ORTHO05D003234 6.3e-07 57.8 89 43.8
AL7G22410 Arabidopsis lyrata HOM05D002433 ORTHO05D003234 8.3e-07 57.4 94 43.6
AT1G72810 Arabidopsis thaliana HOM05D002433 ORTHO05D003234 8.3e-07 57.4 111 42.3
AT4G29840 Arabidopsis thaliana HOM05D002433 ORTHO05D003234 8.3e-07 57.4 94 43.6
Lj3g0023880 Lotus japonicus HOM05D002433 ORTHO05D003234 8.3e-07 57.4 73 46.6
Carub.0004s1479 Capsella rubella HOM05D002433 ORTHO05D003234 1.1e-06 57.0 94 44.7
Haze_25955 Corylus avellana HOM05D002433 ORTHO05D003234 1.1e-06 57.0 87 44.8
Lalb_Chr07g0181011 Lupinus albus HOM05D002433 ORTHO05D003234 1.1e-06 57.0 72 47.2
BcaB05g24778 Brassica carinata HOM05D002433 ORTHO05D003234 1.4e-06 56.6 77 44.2
FvH4_6g34290 Fragaria vesca HOM05D002433 ORTHO05D003234 1.4e-06 56.6 101 40.6
FAN14G3316 Fragaria x ananassa HOM05D002433 ORTHO05D003234 1.4e-06 56.6 101 40.6
BcaB03g12622 Brassica carinata HOM05D002433 ORTHO05D003234 1.8e-06 56.2 94 41.5
MBI18_g29373_MAGBIO Magnolia biondii HOM05D002433 ORTHO05D003234 1.8e-06 56.2 82 42.7
MD09G1187000 Malus domestica HOM05D002433 ORTHO05D003234 1.8e-06 56.2 74 47.3
Cfa003041 Carpinus fangiana HOM05D002433 ORTHO05D003234 2.4e-06 55.8 99 42.4
FAN23G2463 Fragaria x ananassa HOM05D002433 ORTHO05D003234 2.4e-06 55.8 108 40.7
Sed0020651 Sechium edule HOM05D002433 ORTHO05D003234 2.4e-06 55.8 83 42.2
BcaC01g01192 Brassica carinata HOM05D002433 ORTHO05D003234 4.1e-06 55.1 81 44.4
A08p19530 Brassica napus HOM05D002433 ORTHO05D003234 4.1e-06 55.1 81 44.4
C03p89070 Brassica napus HOM05D002433 ORTHO05D003234 4.1e-06 55.1 81 44.4
Eucgr.L00040 Eucalyptus grandis HOM05D002433 ORTHO05D019117 4.1e-06 55.1 64 48.4
Zm00001eb294790 Zea mays HOM05D002433 ORTHO05D003234 4.1e-06 55.1 92 43.5
Os05g0549700 Oryza sativa ssp. japonica HOM05D002433 ORTHO05D003234 5.4e-06 54.7 89 42.7
BraA08t33913Z Brassica rapa HOM05D002433 ORTHO05D003234 7.0e-06 54.3 81 45.7
Ciclev10025353m.g Citrus clementina HOM05D002433 ORTHO05D003234 7.0e-06 54.3 74 44.6
RcHm_v2.0_Chr2g0144621 Rosa chinensis HOM05D002433 ORTHO05D003234 7.0e-06 54.3 103 37.9
Sabra01G0156100 Salix brachista HOM05D002433 ORTHO05D003234 7.0e-06 54.3 99 41.4
AagrBONN_evm.TU.Sc2ySwM_369.152 Anthoceros agrestis HOM05D002433 ORTHO05D003234 9.1e-06 53.9 98 39.8
Sp7g27650 Schrenkiella parvula HOM05D002433 ORTHO05D003234 9.1e-06 53.9 76 47.4


User provided reference genes

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