Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20916 Striga asiatica HOM05D002277 ORTHO05D001770 3.1e-70 268.5 146 100.0
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 4.4e-16 88.6 116 49.1
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 1.3e-15 87.0 146 44.5
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 1.7e-12 76.6 116 43.1
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 2.2e-12 76.3 119 42.0
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 3.8e-12 75.5 113 46.9
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 6.5e-12 74.7 123 41.5
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 1.9e-11 73.2 114 47.4
SalBow3G1041 Salvia bowleyana HOM05D002277 ORTHO05D001770 2.5e-11 72.8 111 46.8
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 4.2e-11 72.0 96 47.9
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 9.4e-11 70.9 73 49.3
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 1.6e-10 70.1 115 45.2
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 1.6e-10 70.1 92 47.8
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 2.1e-10 69.7 102 43.1
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 2.7e-10 69.3 107 46.7
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 2.7e-10 69.3 125 42.4
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 2.7e-10 69.3 105 43.8
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 2.7e-10 69.3 115 44.3
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 3.6e-10 68.9 117 41.9
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 3.6e-10 68.9 117 41.9
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 3.6e-10 68.9 135 39.3
AT5G01790 Arabidopsis thaliana HOM05D010646 ORTHO05D001770 4.7e-10 68.6 74 47.3
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 6.1e-10 68.2 105 43.8
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 8.0e-10 67.8 77 49.4
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 8.0e-10 67.8 82 45.1
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 1.0e-09 67.4 109 41.3
AL6G10240 Arabidopsis lyrata HOM05D010646 ORTHO05D001770 1.8e-09 66.6 61 54.1
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 1.8e-09 66.6 111 42.3
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 1.8e-09 66.6 82 45.1
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.0e-09 65.9 79 46.8
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 3.0e-09 65.9 113 45.1
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 4.0e-09 65.5 115 43.5
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.0e-09 65.5 127 39.4
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.0e-09 65.5 127 39.4
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 4.0e-09 65.5 127 39.4
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 5.2e-09 65.1 95 44.2
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 6.7e-09 64.7 87 49.4
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 6.7e-09 64.7 97 41.2
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 6.7e-09 64.7 104 40.4
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 6.7e-09 64.7 117 42.7
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 6.7e-09 64.7 116 42.2
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 6.7e-09 64.7 99 43.4
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 6.7e-09 64.7 88 42.0
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 8.8e-09 64.3 66 51.5
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 8.8e-09 64.3 95 44.2
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 1.2e-08 63.9 92 46.7
Carub.0006s0004 Capsella rubella HOM05D010646 ORTHO05D001770 1.2e-08 63.9 134 38.8
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.2e-08 63.9 114 38.6
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 1.2e-08 63.9 82 46.3
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 1.2e-08 63.9 92 44.6
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 1.2e-08 63.9 112 44.6
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 1.5e-08 63.5 114 43.0
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.5e-08 63.5 103 42.7
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.5e-08 63.5 113 38.9
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 2.0e-08 63.2 104 40.4
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.0e-08 63.2 86 48.8
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 2.0e-08 63.2 118 39.8
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 2.0e-08 63.2 104 42.3
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 2.0e-08 63.2 113 40.7
EL10Ac7g17051 Beta vulgaris HOM05D002277 ORTHO05D001770 2.6e-08 62.8 124 42.7
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.6e-08 62.8 79 45.6
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 2.6e-08 62.8 147 39.5
Oeu024724.1 Olea europaea HOM05D002277 ORTHO05D001770 2.6e-08 62.8 117 41.9
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 2.6e-08 62.8 119 43.7
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 3.3e-08 62.4 76 47.4
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 3.3e-08 62.4 116 43.1
Solyc06g050370.1 Solanum lycopersicum HOM05D002277 ORTHO05D001770 3.3e-08 62.4 74 44.6
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 4.4e-08 62.0 85 45.9
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 4.4e-08 62.0 112 42.0
A03p22770 Brassica napus HOM05D002277 ORTHO05D001770 5.7e-08 61.6 95 46.3
BraA03t11501Z Brassica rapa HOM05D002277 ORTHO05D001770 5.7e-08 61.6 95 46.3
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 5.7e-08 61.6 115 41.7
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 5.7e-08 61.6 122 40.2
PGR004G0074 Punica granatum HOM05D002277 ORTHO05D001770 5.7e-08 61.6 83 47.0
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 7.5e-08 61.2 113 44.2
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 7.5e-08 61.2 113 42.5
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 7.5e-08 61.2 105 38.1
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 7.5e-08 61.2 116 39.7
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 7.5e-08 61.2 111 40.5
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 7.5e-08 61.2 115 46.1
BcaC01g05398 Brassica carinata HOM05D002277 ORTHO05D001770 9.7e-08 60.8 89 42.7
Cfa011806 Carpinus fangiana HOM05D002277 ORTHO05D001770 9.7e-08 60.8 94 48.9
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.7e-08 60.8 121 38.8
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.3e-07 60.5 114 38.6
Ah.16g104180 Amaranthus hybridus HOM05D002277 ORTHO05D001770 1.3e-07 60.5 124 39.5
BraA05t19171Z Brassica rapa HOM05D002277 ORTHO05D001770 1.3e-07 60.5 101 46.5
RcHm_v2.0_Chr5g0072421 Rosa chinensis HOM05D002277 ORTHO05D001770 1.3e-07 60.5 74 48.6
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.7e-07 60.1 113 44.2
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 1.7e-07 60.1 79 46.8
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 1.7e-07 60.1 103 42.7
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.7e-07 60.1 103 42.7
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 1.7e-07 60.1 94 39.4
A05p01740 Brassica napus HOM05D002277 ORTHO05D001770 2.2e-07 59.7 100 46.0
C04p02010 Brassica napus HOM05D002277 ORTHO05D001770 2.2e-07 59.7 100 46.0
Gohir.D10G187900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.8e-07 59.3 118 38.1
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 2.8e-07 59.3 104 41.3
Sc11g0005700 Simmondsia chinensis HOM05D002277 ORTHO05D001770 2.8e-07 59.3 120 41.7
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 2.8e-07 59.3 95 43.2
C03p27010 Brassica napus HOM05D002277 ORTHO05D001770 3.7e-07 58.9 90 45.6
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 3.7e-07 58.9 114 39.5
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 3.7e-07 58.9 119 42.9
BolC4t21852H Brassica oleracea HOM05D002277 ORTHO05D001770 4.8e-07 58.5 100 45.0
unitig_46.g18741 Utricularia gibba HOM05D002277 ORTHO05D001770 4.8e-07 58.5 113 43.4
BraA03t09397Z Brassica rapa HOM05D010646 ORTHO05D001770 6.3e-07 58.2 63 49.2
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 6.3e-07 58.2 116 44.0
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 6.3e-07 58.2 107 39.3
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 6.3e-07 58.2 111 39.6
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 6.3e-07 58.2 102 41.2
Zm00001eb282060 Zea mays HOM05D002277 ORTHO05D001770 6.3e-07 58.2 45 60.0
A03p00080 Brassica napus HOM05D010646 ORTHO05D001770 8.2e-07 57.8 63 49.2
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 8.2e-07 57.8 113 43.4
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 8.2e-07 57.8 119 37.8
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 8.2e-07 57.8 75 46.7
Lj3g0001226 Lotus japonicus HOM05D002277 ORTHO05D001770 8.2e-07 57.8 118 42.4
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 8.2e-07 57.8 92 45.7
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 8.2e-07 57.8 115 45.2
Sp4g22820 Schrenkiella parvula HOM05D002277 ORTHO05D001770 8.2e-07 57.8 100 45.0
Zm00001eb350250 Zea mays HOM05D002277 ORTHO05D001770 8.2e-07 57.8 98 40.8
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 1.1e-06 57.4 66 50.0
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 1.1e-06 57.4 76 47.4
BcaC07g42035 Brassica carinata HOM05D010829 ORTHO05D001770 1.1e-06 57.4 90 43.3
BolC3t12591H Brassica oleracea HOM05D010646 ORTHO05D001770 1.1e-06 57.4 63 49.2
Cpa.g.sc19.91 Carica papaya HOM05D002277 ORTHO05D001770 1.1e-06 57.4 108 40.7
Ciclev10012858m.g Citrus clementina HOM05D002277 ORTHO05D001770 1.1e-06 57.4 96 42.7
Haze_24445 Corylus avellana HOM05D002277 ORTHO05D001770 1.1e-06 57.4 72 47.2
Thhalv10006243m.g Eutrema salsugineum HOM05D010959 ORTHO05D001770 1.1e-06 57.4 99 38.4
C03p00220 Brassica napus HOM05D010646 ORTHO05D001770 1.4e-06 57.0 63 49.2
Psat7g229920 Pisum sativum HOM05D002277 ORTHO05D001770 1.4e-06 57.0 112 40.2
PGR031G1525 Punica granatum HOM05D002277 ORTHO05D001770 1.4e-06 57.0 64 54.7
Sp5g06240 Schrenkiella parvula HOM05D010959 ORTHO05D001770 1.4e-06 57.0 108 40.7
BcaNung03304 Brassica carinata HOM05D000389 ORTHO05D000287 1.8e-06 56.6 80 38.8
C03p08280 Brassica napus HOM05D010646 ORTHO05D001770 1.8e-06 56.6 63 49.2
BolC3t13336H Brassica oleracea HOM05D010646 ORTHO05D001770 1.8e-06 56.6 63 49.2
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.8e-06 56.6 101 37.6
BcaB01g06253 Brassica carinata HOM05D010646 ORTHO05D001770 2.4e-06 56.2 63 49.2
COL.COLO4_11188 Corchorus olitorius HOM05D002277 ORTHO05D001770 2.4e-06 56.2 62 50.0
ECA248G3276 Erigeron canadensis HOM05D002277 ORTHO05D001770 2.4e-06 56.2 97 42.3
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.4e-06 56.2 93 41.9
Lalb_Chr17g0345561 Lupinus albus HOM05D002277 ORTHO05D001770 2.4e-06 56.2 95 38.9
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 2.4e-06 56.2 62 50.0
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 2.4e-06 56.2 62 50.0
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 3.1e-06 55.8 144 36.1
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 3.1e-06 55.8 144 36.1
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 3.1e-06 55.8 144 36.1
Lsat_1_v5_gn_2_125460 Lactuca sativa HOM05D002277 ORTHO05D001770 3.1e-06 55.8 119 41.2
Phvul.005G105700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 3.1e-06 55.8 66 50.0
C09p74720 Brassica napus HOM05D010646 ORTHO05D001770 4.1e-06 55.5 81 38.3
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 4.1e-06 55.5 102 40.2
FAN21G1843 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.1e-06 55.5 87 43.7
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.1e-06 55.5 108 40.7
TPR.G25757 Trifolium pratense HOM05D002277 ORTHO05D001770 4.1e-06 55.5 106 36.8
EL10Ac2g04267 Beta vulgaris HOM05D002277 ORTHO05D001770 5.3e-06 55.1 107 39.3
BcaC06g31954 Brassica carinata HOM05D010646 ORTHO05D001770 5.3e-06 55.1 74 37.8
BcaNung03299 Brassica carinata HOM05D010646 ORTHO05D001770 5.3e-06 55.1 81 38.3
BolC9t60204H Brassica oleracea HOM05D010646 ORTHO05D001770 5.3e-06 55.1 81 38.3
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 5.3e-06 55.1 106 38.7
Sopen06g015870 Solanum pennellii HOM05D002277 ORTHO05D001770 5.3e-06 55.1 65 44.6
Thecc.09G361400 Theobroma cacao HOM05D002277 ORTHO05D001770 5.3e-06 55.1 79 44.3
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 5.3e-06 55.1 112 40.2
BcaB01g03537 Brassica carinata HOM05D002277 ORTHO05D001770 7.0e-06 54.7 100 43.0
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 7.0e-06 54.7 144 36.8
FAN11G2787 Fragaria x ananassa HOM05D002277 ORTHO05D001770 7.0e-06 54.7 77 45.5
FAN16G0709 Fragaria x ananassa HOM05D002277 ORTHO05D001770 7.0e-06 54.7 77 45.5
Oeu064877.1 Olea europaea HOM05D002277 ORTHO05D001770 7.0e-06 54.7 70 45.7
Sed0006032 Sechium edule HOM05D002277 ORTHO05D001770 7.0e-06 54.7 103 41.7
unitig_37.g12468 Utricularia gibba HOM05D010646 ORTHO05D001770 7.0e-06 54.7 43 62.8
Ah.08g209750 Amaranthus hybridus HOM05D002277 ORTHO05D001770 9.1e-06 54.3 114 38.6
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 9.1e-06 54.3 116 36.2
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 9.1e-06 54.3 101 42.6
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 9.1e-06 54.3 106 36.8
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 9.1e-06 54.3 124 33.9
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 9.1e-06 54.3 111 36.9
Psat2g051880 Pisum sativum HOM05D002277 ORTHO05D001770 9.1e-06 54.3 91 41.8
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 9.1e-06 54.3 109 39.4


User provided reference genes

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