Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 2.5e-124 448.7 222 100.0
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 2.5e-55 219.5 237 54.4
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.6e-54 216.9 235 53.6
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 2.3e-53 213.0 227 53.3
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 5.2e-45 185.3 157 55.4
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 2.6e-44 183.0 175 53.1
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 4.4e-44 182.2 175 53.1
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 2.2e-43 179.9 196 50.0
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 6.4e-43 178.3 227 45.4
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 8.3e-43 177.9 227 43.6
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 8.3e-43 177.9 194 49.0
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.4e-42 175.3 166 51.2
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 9.5e-39 164.5 237 42.2
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 6.2e-38 161.8 188 44.7
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.3e-37 159.8 215 40.9
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.1e-37 159.5 190 43.2
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.5e-36 157.1 189 43.4
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 2.0e-36 156.8 247 41.3
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.0e-36 156.8 155 51.6
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 7.5e-36 154.8 161 47.8
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 2.2e-35 153.3 145 51.0
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 2.2e-35 153.3 154 50.0
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 3.7e-35 152.5 234 39.7
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 3.7e-35 152.5 157 51.0
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 4.9e-35 152.1 192 42.2
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 4.9e-35 152.1 194 45.4
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 6.4e-35 151.8 193 47.2
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 8.3e-35 151.4 177 46.3
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.4e-34 150.6 153 47.1
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.9e-34 150.2 170 46.5
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.9e-34 150.2 170 46.5
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.4e-34 149.8 170 47.1
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.2e-34 149.4 149 49.0
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 4.1e-34 149.1 156 50.6
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 4.1e-34 149.1 156 50.6
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.1e-34 149.1 168 47.6
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.4e-34 148.7 150 48.7
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 5.4e-34 148.7 176 42.0
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 7.1e-34 148.3 232 38.4
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.2e-33 147.5 157 48.4
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.1e-33 146.7 189 40.7
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.7e-33 146.4 158 47.5
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 3.5e-33 146.0 173 43.4
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 3.5e-33 146.0 173 43.4
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 4.6e-33 145.6 176 41.5
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 4.6e-33 145.6 173 42.8
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 4.6e-33 145.6 176 41.5
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.0e-33 145.2 149 48.3
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.0e-32 144.4 153 47.1
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.0e-32 144.4 153 47.1
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.0e-32 144.4 217 42.9
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 2.3e-32 143.3 156 44.9
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 3.0e-32 142.9 163 44.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.9e-32 142.5 188 39.9
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 5.1e-32 142.1 175 44.0
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 4.3e-31 139.0 157 45.9
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 5.6e-31 138.7 248 36.3
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 5.6e-31 138.7 158 44.9
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 5.6e-31 138.7 198 40.9
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 9.5e-31 137.9 153 45.1
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 9.5e-31 137.9 153 45.1
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.6e-30 137.1 152 44.1
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.8e-30 136.3 154 43.5
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 2.8e-30 136.3 232 37.1
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 3.6e-30 136.0 162 43.8
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 3.6e-30 136.0 173 43.4
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 8.1e-30 134.8 232 38.8
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 8.1e-30 134.8 187 40.1
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.1e-29 134.4 154 46.8
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.4e-29 134.0 168 42.9
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.8e-29 133.7 163 43.6
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.3e-29 133.3 242 36.0
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.3e-29 133.3 156 44.9
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 3.1e-29 132.9 146 44.5
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 4.0e-29 132.5 162 43.2
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 5.2e-29 132.1 163 47.2
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 5.2e-29 132.1 163 46.6
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 8.9e-29 131.3 243 37.4
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.2e-28 131.0 165 44.2
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.2e-28 131.0 156 41.0
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.2e-28 131.0 156 41.7
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.5e-28 130.6 156 41.0
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.5e-28 130.6 203 36.5
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 2.0e-28 130.2 157 42.0
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.4e-28 129.4 165 39.4
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 4.4e-28 129.0 156 46.2
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.4e-28 129.0 159 45.3
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 4.4e-28 129.0 238 39.1
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 5.8e-28 128.6 194 40.7
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.3e-27 127.5 188 38.3
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.3e-27 127.5 210 40.5
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.3e-27 127.5 165 37.6
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.3e-27 127.5 164 39.6
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.2e-27 126.7 154 44.2
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 4.9e-27 125.6 187 36.9
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 4.9e-27 125.6 187 36.9
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 6.4e-27 125.2 179 36.3
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.1e-26 124.4 224 37.9
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 1.4e-26 124.0 187 36.4
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.9e-26 123.6 165 40.0
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 2.4e-26 123.2 229 36.7
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 4.1e-26 122.5 248 36.3
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 5.4e-26 122.1 163 40.5
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 5.4e-26 122.1 151 41.1
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 9.2e-26 121.3 189 43.4
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.2e-25 120.9 232 36.2
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.6e-25 120.6 159 44.0
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.6e-25 120.6 170 42.4
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.7e-25 119.8 152 42.1
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.7e-25 119.8 200 37.5
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 3.5e-25 119.4 203 34.0
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.0e-24 117.9 139 48.2
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 2.3e-24 116.7 172 40.1
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.1e-24 115.5 162 41.4
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 6.6e-24 115.2 157 43.3
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 8.6e-24 114.8 175 38.3
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.5e-23 114.0 186 36.6
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.5e-23 114.0 186 36.6
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 2.5e-23 113.2 170 38.2
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.3e-23 111.7 128 46.1
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 9.6e-23 111.3 178 37.6
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.2e-22 110.9 217 35.0
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.6e-22 110.5 128 44.5
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 2.8e-22 109.8 157 40.8
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.6e-22 109.4 128 46.1
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 4.7e-22 109.0 171 37.4
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.1e-21 107.8 156 41.0
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.4e-21 107.5 158 41.1
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.4e-21 107.5 222 34.7
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.4e-21 107.5 167 38.3
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.4e-21 107.5 167 38.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.8e-21 107.1 254 35.8
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.4e-21 106.7 225 35.1
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.4e-21 106.7 180 36.7
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.0e-21 105.9 224 34.4
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.5e-20 104.0 159 33.3
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.0e-20 103.6 162 37.7
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 2.0e-20 103.6 161 39.8
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.0e-20 103.6 168 35.7
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 9.9e-20 101.3 201 33.8
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.7e-19 100.5 157 39.5
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.2e-19 100.1 159 38.4
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 2.2e-19 100.1 159 38.4
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 3.8e-19 99.4 189 36.0
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 4.9e-19 99.0 178 34.3
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 6.4e-19 98.6 176 36.4
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 8.4e-19 98.2 232 33.2
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.4e-18 97.4 169 32.5
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.4e-18 96.7 165 34.5
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.1e-17 93.6 90 47.8
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 2.1e-17 93.6 155 30.3
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 5.1e-16 89.0 128 39.8
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.5e-15 87.4 150 30.7
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.5e-12 75.9 179 31.8
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 7.6e-12 75.1 123 35.8
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.1e-10 71.2 176 29.5
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.4e-10 70.9 201 28.4
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 2.7e-09 66.6 97 40.2
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 4.6e-09 65.9 63 47.6
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 3.9e-08 62.8 72 47.2
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.5e-07 60.8 77 40.3
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 3.3e-07 59.7 112 33.9


User provided reference genes

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