Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20848 Striga asiatica HOM05D002840 ORTHO05D003088 1.0e-116 423.3 204 100.0
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 1.7e-13 80.5 136 40.4
Peaxi162Scf00073g00181 Petunia axillaris HOM05D001569 ORTHO05D001723 5.9e-11 72.0 63 52.4
Peaxi162Scf00695g00022 Petunia axillaris HOM05D000636 ORTHO05D002338 2.2e-10 70.1 36 75.0
COL.COLO4_37307 Corchorus olitorius HOM05D002840 ORTHO05D003088 2.9e-10 69.7 87 44.8
FAN03G0116 Fragaria x ananassa HOM05D002840 ORTHO05D003088 3.8e-10 69.3 64 48.4
Hma1.2p1_2647F.1_g326050 Hydrangea macrophylla HOM05D002840 ORTHO05D003088 3.8e-10 69.3 65 44.6
Nitab4.5_0014508g0020 Nicotiana tabacum HOM05D002840 ORTHO05D003088 3.8e-10 69.3 63 52.4
Nitab4.5_0000103g0210 Nicotiana tabacum HOM05D002840 ORTHO05D003088 5.0e-10 68.9 63 52.4
CAN.G564.16 Capsicum annuum HOM05D002840 ORTHO05D003088 1.5e-09 67.4 64 51.6
Peaxi162Scf00595g00415 Petunia axillaris HOM05D000636 ORTHO05D002338 1.5e-09 67.4 67 47.8
FAN06G0263 Fragaria x ananassa HOM05D002840 ORTHO05D003088 1.9e-09 67.0 64 48.4
Oeu026431.1 Olea europaea HOM05D002840 ORTHO05D003088 1.9e-09 67.0 63 54.0
FAN10G4374 Fragaria x ananassa HOM05D002840 ORTHO05D003088 4.2e-09 65.9 64 46.9
Ciclev10033513m.g Citrus clementina HOM05D002840 ORTHO05D003088 5.5e-09 65.5 64 46.9
Gohir.A07G044700 Gossypium hirsutum HOM05D002840 ORTHO05D003088 5.5e-09 65.5 64 46.9
Gohir.D07G049200 Gossypium hirsutum HOM05D002840 ORTHO05D003088 5.5e-09 65.5 64 48.4
Gorai.001G052300 Gossypium raimondii HOM05D002840 ORTHO05D003088 5.5e-09 65.5 64 48.4
GSVIVG01024474001 Vitis vinifera HOM05D002840 ORTHO05D003088 5.5e-09 65.5 52 53.8
Solyc03g094000.3 Solanum lycopersicum HOM05D002840 ORTHO05D003088 7.2e-09 65.1 69 49.3
Sopen03g024850 Solanum pennellii HOM05D002840 ORTHO05D003088 7.2e-09 65.1 70 50.0
Cpa.g.sc13.220 Carica papaya HOM05D002840 ORTHO05D003088 9.4e-09 64.7 69 44.9
PGR042G1604 Punica granatum HOM05D002840 ORTHO05D003088 9.4e-09 64.7 34 70.6
RcHm_v2.0_Chr1g0373221 Rosa chinensis HOM05D002840 ORTHO05D003088 9.4e-09 64.7 85 38.8
CAN.G297.13 Capsicum annuum HOM05D001569 ORTHO05D001723 1.2e-08 64.3 67 46.3
Migut.F00543 Erythranthe guttata HOM05D002840 ORTHO05D003088 1.2e-08 64.3 31 80.6
Cfa013605 Carpinus fangiana HOM05D002840 ORTHO05D003088 1.6e-08 63.9 32 78.1
PSO063G1887 Papaver somniferum HOM05D002840 ORTHO05D003088 1.6e-08 63.9 63 49.2
Prupe.2G269900 Prunus persica HOM05D002840 ORTHO05D003088 1.6e-08 63.9 64 42.2
CiPaw.07G183000 Carya illinoinensis HOM05D002840 ORTHO05D003088 2.1e-08 63.5 66 50.0
PSO782G1883 Papaver somniferum HOM05D002840 ORTHO05D003088 2.1e-08 63.5 54 57.4
Haze_22226 Corylus avellana HOM05D002840 ORTHO05D003088 3.6e-08 62.8 32 75.0
Dinv34532 Davidia involucrata HOM05D001569 ORTHO05D001723 6.1e-08 62.0 64 45.3
FAN01G0831 Fragaria x ananassa HOM05D002840 ORTHO05D003088 8.0e-08 61.6 64 43.8
Aqoxy180s010 Aquilegia oxysepala HOM05D002840 ORTHO05D003088 1.0e-07 61.2 56 50.0
Aqoxy3G02655 Aquilegia oxysepala HOM05D002840 ORTHO05D003088 1.0e-07 61.2 56 50.0
HanXRQChr07g0198111 Helianthus annuus HOM05D002840 ORTHO05D003088 1.0e-07 61.2 55 47.3
Manes.14G041200 Manihot esculenta HOM05D002840 ORTHO05D003088 1.0e-07 61.2 68 45.6
Actinidia31762 Actinidia chinensis HOM05D001569 ORTHO05D001723 1.4e-07 60.8 39 61.5
Eucgr.A02934 Eucalyptus grandis HOM05D002840 ORTHO05D003088 1.4e-07 60.8 53 49.1
Nn6g33762 Nelumbo nucifera HOM05D002840 ORTHO05D003088 1.4e-07 60.8 34 70.6
Lsat_1_v5_gn_2_127261 Lactuca sativa HOM05D002840 ORTHO05D003088 1.8e-07 60.5 52 50.0
MD01G1174500 Malus domestica HOM05D002840 ORTHO05D003088 1.8e-07 60.5 64 42.2
Sed0008351 Sechium edule HOM05D002840 ORTHO05D003088 2.3e-07 60.1 52 51.9
Lj1A973T46 Lonicera japonica HOM05D002840 ORTHO05D003088 3.0e-07 59.7 63 47.6
Lj1C972T4 Lonicera japonica HOM05D002840 ORTHO05D003088 3.0e-07 59.7 63 47.6
SalBow3G4192 Salvia bowleyana HOM05D002840 ORTHO05D003088 4.0e-07 59.3 35 65.7
PGSC0003DMG400008343 Solanum tuberosum HOM05D002840 ORTHO05D003088 5.2e-07 58.9 30 73.3
TAR272G0001 Trochodendron aralioides HOM05D002840 ORTHO05D003088 6.8e-07 58.5 30 73.3
MELO3C017629.2 Cucumis melo HOM05D002840 ORTHO05D003088 8.8e-07 58.2 54 51.9
DCAR_014645 Daucus carota HOM05D002840 ORTHO05D003088 8.8e-07 58.2 44 54.5
ECA238G0017 Erigeron canadensis HOM05D000071 ORTHO05D003088 8.8e-07 58.2 53 47.2
ECA238G0207 Erigeron canadensis HOM05D002840 ORTHO05D003088 8.8e-07 58.2 53 47.2
TAR375G0308 Trochodendron aralioides HOM05D002840 ORTHO05D003088 8.8e-07 58.2 30 73.3
ClCG07G017170 Citrullus lanatus HOM05D002840 ORTHO05D003088 1.2e-06 57.8 31 67.7
CsaV3_4G004370 Cucumis sativus L. HOM05D002840 ORTHO05D003088 1.5e-06 57.4 30 70.0
Atru.chr6.1975 Acer truncatum HOM05D002840 ORTHO05D003088 2.6e-06 56.6 77 39.0
Rhsim09G0188400 Rhododendron simsii HOM05D002840 ORTHO05D003088 2.6e-06 56.6 64 43.8
CSS0003465 Camellia sinensis var. sinensis HOM05D002840 ORTHO05D003088 5.7e-06 55.5 64 42.2
CANSAT56G0024 Cannabis sativa HOM05D002840 ORTHO05D003088 7.5e-06 55.1 60 38.3


User provided reference genes

Program Settings