Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 1.7e-254 882.1 426 100.0
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.9e-83 313.9 160 93.8
SGA_v2.0_scaffold250G45020 Striga asiatica HOM05D011763 ORTHO05D014257 1.0e-73 281.6 179 79.9
SGA_v2.0_scaffold250G45024 Striga asiatica HOM05D011763 ORTHO05D014257 2.8e-71 273.5 179 76.0
SGA_v2.0_scaffold250G45027 Striga asiatica HOM05D011763 ORTHO05D014257 2.8e-71 273.5 179 76.0
SGA_v2.0_scaffold56G19979 Striga asiatica HOM05D011763 ORTHO05D014257 6.9e-70 268.9 179 74.3
SGA_v2.0_scaffold60G20816 Striga asiatica HOM05D011763 ORTHO05D014257 7.1e-59 232.3 182 69.2
SGA_v2.0_scaffold60G21067 Striga asiatica HOM05D011763 ORTHO05D014257 4.8e-55 219.5 118 88.1
SGA_v2.0_scaffold60G21109 Striga asiatica HOM05D011763 ORTHO05D014257 2.6e-53 213.8 110 89.1
SGA_v2.0_scaffold1G00615 Striga asiatica HOM05D011763 ORTHO05D014257 1.6e-50 204.5 161 69.6
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 6.7e-33 146.0 363 32.5
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 2.2e-31 141.0 350 31.7
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 5.5e-27 126.3 165 43.6
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 1.0e-25 122.1 298 32.6
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 3.3e-24 117.1 342 30.4
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 1.7e-23 114.8 322 31.4
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.2e-23 114.4 327 30.6
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 4.8e-23 113.2 320 30.6
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 6.3e-23 112.8 319 30.1
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 2.4e-22 110.9 327 30.9
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.4e-22 110.9 336 31.0
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 4.1e-22 110.2 327 31.2
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 4.1e-22 110.2 326 30.7
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.3e-22 109.8 327 30.0
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 9.1e-22 109.0 349 30.1
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 1.6e-21 108.2 323 30.7
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.6e-21 107.5 326 30.4
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.3e-20 105.1 320 31.2
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 1.7e-20 104.8 327 28.1
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 5.0e-20 103.2 131 46.6
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 8.5e-20 102.4 114 48.2
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 1.1e-19 102.1 276 30.8
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 4.2e-19 100.1 312 31.4
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 5.5e-19 99.8 109 51.4
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 7.2e-19 99.4 119 48.7
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 9.4e-19 99.0 111 48.6
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 1.2e-18 98.6 122 47.5
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 1.2e-18 98.6 139 42.4
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 1.6e-18 98.2 100 52.0
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.6e-18 98.2 109 46.8
SGA_v2.0_scaffold70G23637 Striga asiatica HOM05D011763 ORTHO05D014257 2.1e-18 97.8 153 44.4
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 3.6e-18 97.1 100 52.0
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 3.6e-18 97.1 94 54.3
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 4.7e-18 96.7 133 40.6
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 4.7e-18 96.7 313 29.7
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 4.7e-18 96.7 100 50.0
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 6.1e-18 96.3 286 28.7
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 8.0e-18 95.9 124 43.5
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.8e-17 94.7 113 44.2
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 2.3e-17 94.4 100 49.0
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 2.3e-17 94.4 95 52.6
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 3.0e-17 94.0 100 51.0
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 3.0e-17 94.0 93 52.7
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 4.0e-17 93.6 95 51.6
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 4.0e-17 93.6 89 51.7
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 5.2e-17 93.2 109 47.7
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 5.2e-17 93.2 114 45.6
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 5.2e-17 93.2 121 41.3
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 5.2e-17 93.2 121 41.3
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 5.2e-17 93.2 100 51.0
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 5.2e-17 93.2 88 54.5
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.8e-17 92.8 93 50.5
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 6.8e-17 92.8 105 50.5
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 8.8e-17 92.4 98 53.1
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 8.8e-17 92.4 322 26.4
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.2e-16 92.0 97 51.5
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 2.0e-16 91.3 109 44.0
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 2.0e-16 91.3 94 50.0
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 2.6e-16 90.9 95 49.5
SalBow8G1157 Salvia bowleyana HOM05D011763 ORTHO05D014257 2.6e-16 90.9 144 40.3
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 2.6e-16 90.9 105 45.7
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 3.4e-16 90.5 94 47.9
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 4.4e-16 90.1 108 41.7
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 5.7e-16 89.7 94 50.0
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 5.7e-16 89.7 109 47.7
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 5.7e-16 89.7 108 41.7
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 5.7e-16 89.7 92 52.2
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 5.7e-16 89.7 152 38.2
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 7.5e-16 89.4 58 70.7
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 7.5e-16 89.4 90 51.1
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.3e-15 88.6 92 48.9
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 1.3e-15 88.6 95 49.5
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.3e-15 88.6 95 49.5
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.3e-15 88.6 95 49.5
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.3e-15 88.6 95 49.5
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.7e-15 88.2 124 38.7
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 1.7e-15 88.2 94 52.1
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.8e-15 87.4 114 45.6
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 3.7e-15 87.0 113 40.7
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 3.7e-15 87.0 93 51.6
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 3.7e-15 87.0 110 41.8
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 6.3e-15 86.3 117 45.3
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 6.3e-15 86.3 121 37.2
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 8.3e-15 85.9 82 48.8
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 8.3e-15 85.9 108 45.4
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.1e-14 85.5 95 47.4
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 2.4e-14 84.3 101 48.5
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 4.1e-14 83.6 110 43.6
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 4.1e-14 83.6 68 58.8
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 5.4e-14 83.2 91 48.4
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 7.0e-14 82.8 56 62.5
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 9.1e-14 82.4 75 54.7
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 9.1e-14 82.4 110 42.7
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.2e-13 82.0 93 46.2
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.2e-13 82.0 93 49.5
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 2.7e-13 80.9 64 56.2
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 4.5e-13 80.1 76 51.3
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 7.7e-13 79.3 95 48.4
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 1.3e-12 78.6 75 48.0
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 1.7e-12 78.2 64 54.7
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.7e-12 78.2 94 44.7
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 2.2e-12 77.8 92 44.6
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 2.2e-12 77.8 56 60.7
SalBow8G1306 Salvia bowleyana HOM05D011763 ORTHO05D014257 2.2e-12 77.8 118 37.3
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 2.9e-12 77.4 86 45.3
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 2.9e-12 77.4 56 60.7
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 2.9e-12 77.4 109 40.4
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.9e-12 77.4 51 74.5
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 5.0e-12 76.6 125 35.2
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 6.5e-12 76.3 64 53.1
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 1.5e-11 75.1 54 59.3
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 1.5e-11 75.1 56 57.1
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 1.5e-11 75.1 56 57.1
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 1.5e-11 75.1 54 59.3
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.5e-11 75.1 50 70.0
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 9.4e-11 72.4 286 25.2
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.2e-10 72.0 74 44.6
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.2e-10 72.0 74 44.6
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 6.1e-10 69.7 45 64.4
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 1.0e-09 68.9 52 55.8
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 8.8e-09 65.9 81 46.9
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 8.8e-09 65.9 45 60.0
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 2.0e-08 64.7 141 30.5
SalBow8G2893 Salvia bowleyana HOM05D041342 ORTHO05D014257 5.7e-08 63.2 127 31.5
SalBow8G5061 Salvia bowleyana HOM05D041342 ORTHO05D014257 9.8e-08 62.4 127 31.5
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 3.7e-07 60.5 53 45.3
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 1.1e-06 58.9 112 31.2
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 4.1e-06 57.0 44 56.8
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 9.1e-06 55.8 121 34.7


User provided reference genes

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