Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 1.1e-173 613.2 301 100.0
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 9.1e-109 397.5 317 65.6
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.7e-107 393.3 315 65.1
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 4.7e-97 358.6 359 56.0
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 7.4e-95 351.3 362 53.9
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 4.5e-92 342.0 318 56.6
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 6.5e-91 338.2 318 57.9
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.1e-90 337.4 316 58.5
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 1.9e-90 336.7 315 58.4
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 5.5e-90 335.1 315 57.5
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 5.5e-90 335.1 317 58.4
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 9.4e-90 334.3 308 59.1
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.2e-89 334.0 315 57.8
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 1.6e-89 333.6 318 56.9
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.1e-89 333.2 253 66.0
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 2.7e-89 332.8 316 57.9
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 4.7e-89 332.0 318 57.2
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 8.0e-89 331.3 308 57.5
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.0e-88 330.9 308 58.1
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 1.8e-88 330.1 320 57.5
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 3.0e-88 329.3 317 57.4
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 8.8e-88 327.8 227 71.4
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 2.0e-87 326.6 315 57.1
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 4.4e-87 325.5 315 57.1
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 7.5e-87 324.7 314 56.1
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 7.5e-87 324.7 316 54.1
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 2.2e-86 323.2 336 53.3
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 2.8e-86 322.8 309 56.6
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 4.8e-86 322.0 309 55.7
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 4.8e-86 322.0 316 55.7
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 6.3e-86 321.6 309 57.3
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 8.2e-86 321.2 302 60.9
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 1.1e-85 320.9 318 55.3
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 1.1e-85 320.9 308 56.5
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.4e-85 319.7 309 55.7
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 3.1e-85 319.3 314 56.1
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 3.1e-85 319.3 312 56.4
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 4.1e-85 318.9 311 57.6
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 4.1e-85 318.9 318 54.7
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 5.3e-85 318.5 228 70.2
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 5.3e-85 318.5 308 57.1
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.7e-84 316.2 308 55.5
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 3.5e-84 315.8 319 55.8
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 4.5e-84 315.5 314 54.5
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 5.9e-84 315.1 226 70.8
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.0e-83 314.3 316 54.4
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.0e-83 314.3 302 57.9
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 5.0e-83 312.0 309 55.0
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 6.5e-83 311.6 226 68.1
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 8.5e-83 311.2 339 52.5
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 3.2e-82 309.3 297 57.6
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 5.5e-82 308.5 229 69.4
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.6e-81 307.0 221 67.9
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 3.6e-81 305.8 316 54.4
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 8.0e-81 304.7 308 53.2
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 1.0e-80 304.3 222 68.9
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 2.3e-80 303.1 312 53.8
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.2e-80 302.0 258 61.6
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 8.8e-80 301.2 222 66.7
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 1.5e-79 300.4 256 61.3
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 2.0e-79 300.1 313 52.7
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 3.4e-79 299.3 221 67.0
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 4.4e-79 298.9 236 64.8
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 5.7e-79 298.5 224 65.6
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.7e-78 297.0 227 64.8
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.2e-78 296.6 313 52.1
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.2e-78 296.6 256 59.8
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 3.7e-78 295.8 364 48.6
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 4.8e-78 295.4 223 65.5
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.1e-77 294.3 300 54.3
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.1e-77 294.3 222 65.8
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 4.1e-77 292.4 221 64.7
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 5.4e-77 292.0 299 53.2
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 9.1e-77 291.2 258 59.3
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 1.6e-76 290.4 315 52.1
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.6e-76 290.4 222 65.3
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 2.0e-76 290.0 309 51.5
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 2.0e-76 290.0 314 50.3
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 2.0e-76 290.0 222 64.9
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 2.7e-76 289.7 222 65.3
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 2.7e-76 289.7 256 60.2
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 7.7e-76 288.1 309 51.8
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 7.7e-76 288.1 256 58.6
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 7.7e-76 288.1 309 50.8
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 1.0e-75 287.7 222 63.5
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.0e-75 287.7 221 64.3
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 2.9e-75 286.2 288 54.2
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 8.6e-75 284.6 311 50.8
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 8.6e-75 284.6 256 58.6
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 8.6e-75 284.6 314 50.6
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.5e-74 283.1 227 63.4
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 3.3e-74 282.7 221 65.2
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 9.5e-74 281.2 169 81.1
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 2.8e-73 279.6 217 65.0
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.8e-73 279.6 256 57.0
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.0e-72 275.8 256 56.2
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 5.2e-72 275.4 256 56.2
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 2.0e-71 273.5 252 58.3
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 2.6e-71 273.1 199 65.8
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 1.8e-69 266.9 241 58.1
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 1.8e-69 266.9 169 76.3
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 3.8e-67 259.2 193 71.0
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 1.1e-66 257.7 175 71.4
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 4.3e-66 255.8 257 53.3
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 4.3e-66 255.8 257 53.3
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 3.6e-65 252.7 257 52.5
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 3.6e-65 252.7 257 52.5
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.7e-62 243.8 167 74.9
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 4.9e-62 242.3 317 46.4
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 4.0e-56 222.6 250 50.0
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 3.0e-51 206.5 209 51.2
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 2.8e-49 199.9 157 64.3
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 1.4e-48 197.6 208 48.1
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 2.0e-47 193.7 219 46.1
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 5.4e-45 185.7 252 42.9
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.6e-44 184.1 141 66.0
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 2.7e-44 183.3 95 91.6
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 4.6e-44 182.6 212 43.4
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 2.4e-40 170.2 139 64.0
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 6.8e-40 168.7 198 44.9
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 3.3e-34 149.8 179 46.9
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 3.4e-31 139.8 80 81.2
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 4.9e-30 136.0 161 47.8
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 1.1e-26 124.8 178 38.8
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 2.9e-22 110.2 80 66.2
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 2.4e-21 107.1 80 63.8
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 3.5e-20 103.2 186 36.0
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.8e-16 90.9 65 63.1
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 7.6e-15 85.5 144 38.9
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 1.9e-13 80.9 69 55.1
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 6.0e-12 75.9 129 38.8
PRCOL_00000045 Prasinoderma coloniale HOM05D005379 ORTHO05D006661 2.5e-10 70.5 176 27.3
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 3.3e-10 70.1 40 77.5
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 2.4e-08 63.9 76 53.9
Lj1A976T72 Lonicera japonica HOM05D005379 ORTHO05D006661 5.3e-08 62.8 86 45.3
Peaxi162Scf00304g01114 Petunia axillaris HOM05D005379 ORTHO05D006661 5.3e-08 62.8 38 76.3
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 6.9e-08 62.4 46 67.4
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.6e-07 60.5 81 43.2
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 4.5e-07 59.7 52 50.0
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 4.9e-06 56.2 36 75.0


User provided reference genes

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