Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 3.9e-52 208.0 115 100.0
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 2.5e-43 178.7 112 86.6
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 1.1e-33 146.7 116 70.7
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 5.3e-33 144.4 125 68.8
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 3.4e-32 141.7 116 66.4
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 7.1e-30 134.0 110 70.0
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 3.5e-29 131.7 116 69.0
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 3.9e-28 128.3 113 67.3
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 6.7e-28 127.5 115 67.0
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 1.1e-27 126.7 113 65.5
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 1.5e-27 126.3 113 64.6
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 2.5e-27 125.6 126 66.7
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 4.3e-27 124.8 113 64.6
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 5.7e-27 124.4 113 62.8
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 9.6e-27 123.6 125 62.4
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 9.6e-27 123.6 113 63.7
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 6.3e-26 120.9 114 64.9
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 8.2e-26 120.6 113 61.9
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 1.4e-25 119.8 127 58.3
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 1.4e-25 119.8 116 63.8
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 1.8e-25 119.4 120 57.5
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 4.1e-25 118.2 114 60.5
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 5.3e-25 117.9 116 63.8
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 5.3e-25 117.9 119 63.0
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 3.4e-24 115.2 113 61.1
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 3.4e-24 115.2 123 58.5
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 5.9e-24 114.4 110 57.3
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 5.9e-24 114.4 116 59.5
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 7.6e-24 114.0 116 62.9
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 7.6e-24 114.0 119 60.5
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 2.2e-23 112.5 116 59.5
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 2.2e-23 112.5 113 60.2
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 2.9e-23 112.1 118 59.3
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 5.0e-23 111.3 117 56.4
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 6.5e-23 110.9 116 59.5
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 6.5e-23 110.9 111 57.7
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 6.5e-23 110.9 117 61.5
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 6.5e-23 110.9 120 55.0
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 8.4e-23 110.5 106 60.4
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 1.1e-22 110.2 122 59.8
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.4e-22 109.8 113 61.1
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.4e-22 109.8 113 61.1
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 3.2e-22 108.6 117 59.8
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 4.2e-22 108.2 116 52.6
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 7.2e-22 107.5 127 57.5
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 1.2e-21 106.7 126 54.8
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 1.2e-21 106.7 116 51.7
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.6e-21 106.3 97 63.9
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 2.1e-21 105.9 126 57.1
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 2.7e-21 105.5 121 57.0
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 3.5e-21 105.1 102 63.7
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 7.9e-21 104.0 122 59.8
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 7.9e-21 104.0 115 56.5
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 1.0e-20 103.6 118 56.8
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 1.8e-20 102.8 122 57.4
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 2.3e-20 102.4 110 56.4
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 3.0e-20 102.1 126 54.0
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 3.9e-20 101.7 122 55.7
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 1.5e-19 99.8 119 54.6
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.9e-19 99.4 126 53.2
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.9e-19 99.4 126 53.2
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 3.3e-19 98.6 122 54.9
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 4.3e-19 98.2 123 50.4
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 1.6e-18 96.3 127 52.8
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.2e-18 95.9 117 53.0
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 1.4e-17 93.2 115 53.0
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.8e-17 92.8 117 51.3
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.4e-17 92.4 117 51.3
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 3.1e-17 92.0 122 53.3
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 5.3e-17 91.3 105 55.2
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 9.0e-17 90.5 117 50.4
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 9.0e-17 90.5 117 50.4
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 2.0e-16 89.4 110 50.9
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 2.6e-16 89.0 111 53.2
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 1.0e-15 87.0 111 53.2
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 1.3e-15 86.7 112 54.5
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 1.3e-15 86.7 112 54.5
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 2.2e-15 85.9 119 52.9
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 1.1e-14 83.6 94 55.3
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 1.4e-14 83.2 113 51.3
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 3.2e-14 82.0 119 52.9
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 3.2e-14 82.0 119 53.8
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 7.2e-14 80.9 119 52.9
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 9.4e-14 80.5 119 52.1
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 9.4e-14 80.5 119 52.1
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 1.2e-13 80.1 118 52.5
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 1.2e-13 80.1 123 49.6
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 1.6e-13 79.7 223 35.0
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 2.1e-13 79.3 119 51.3
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 4.6e-13 78.2 132 44.7
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 4.6e-13 78.2 57 73.7
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 7.9e-13 77.4 121 52.1
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 7.9e-13 77.4 99 51.5
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 1.0e-12 77.0 123 48.8
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 1.0e-12 77.0 118 53.4
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 1.0e-12 77.0 122 48.4
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 1.0e-12 77.0 117 48.7
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 1.4e-12 76.6 116 50.9
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 1.4e-12 76.6 116 50.9
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 1.8e-12 76.3 121 47.9
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 1.8e-12 76.3 119 49.6
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 2.3e-12 75.9 114 51.8
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 2.3e-12 75.9 51 78.4
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 3.0e-12 75.5 119 49.6
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 3.9e-12 75.1 100 55.0
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 5.1e-12 74.7 49 79.6
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 6.7e-12 74.3 61 70.5
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 1.1e-11 73.6 54 74.1
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 2.0e-11 72.8 124 47.6
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 3.3e-11 72.0 114 50.9
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 4.3e-11 71.6 119 48.7
SGA_v2.0_scaffold174G39225 Striga asiatica HOM05D000107 ORTHO05D000062 1.4e-09 66.6 41 87.8
SalBow3G4021 Salvia bowleyana HOM05D037885 ORTHO05D007696 3.1e-09 65.5 83 54.2
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 4.1e-09 65.1 65 55.4
SalBow1G7846 Salvia bowleyana HOM05D037885 ORTHO05D007696 5.3e-09 64.7 86 53.5
Cfa002056 Carpinus fangiana HOM05D006797 ORTHO05D007696 1.2e-08 63.5 157 36.9
SalBow1G3404 Salvia bowleyana HOM05D037885 ORTHO05D007696 2.6e-08 62.4 84 53.6
SGA_v2.0_scaffold39G15343 Striga asiatica HOM05D004615 ORTHO05D000385 3.4e-08 62.0 40 82.5
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 1.0e-07 60.5 66 51.5
Peaxi162Scf00036g00205 Petunia axillaris HOM05D018135 ORTHO05D020298 8.5e-07 57.4 56 51.8
Pp3c24_14860 Physcomitrium patens HOM05D006797 ORTHO05D007696 8.5e-07 57.4 115 42.6
PGSC0003DMG400034320 Solanum tuberosum HOM05D001388 ORTHO05D001234 2.5e-06 55.8 90 48.9
SMO167G0044 Selaginella moellendorffii HOM05D006797 ORTHO05D007696 7.2e-06 54.3 119 38.7


User provided reference genes

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