Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 3.8e-82 308.1 158 100.0
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 1.1e-25 120.6 161 50.9
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 1.9e-20 103.2 72 75.0
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.7e-18 96.7 98 55.1
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.6e-16 90.1 88 54.5
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 6.2e-16 88.2 100 50.0
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 8.1e-16 87.8 79 60.8
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 2.3e-15 86.3 72 65.3
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 3.1e-15 85.9 70 62.9
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 5.2e-15 85.1 90 55.6
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.2e-15 85.1 66 65.2
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.2e-15 85.1 66 65.2
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 8.9e-15 84.3 67 67.2
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 8.9e-15 84.3 63 68.3
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.2e-14 84.0 124 45.2
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.2e-14 84.0 64 68.8
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.2e-14 84.0 67 65.7
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.4e-14 82.4 65 66.2
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 3.4e-14 82.4 61 68.9
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 5.8e-14 81.6 58 75.9
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 5.8e-14 81.6 59 69.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 7.5e-14 81.3 61 70.5
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 9.8e-14 80.9 63 66.7
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.3e-13 80.5 69 63.8
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.7e-13 80.1 66 63.6
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.7e-13 80.1 88 54.5
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.7e-13 80.1 57 73.7
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 2.2e-13 79.7 99 45.5
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 2.2e-13 79.7 61 68.9
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.9e-13 79.3 77 53.2
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.9e-13 79.3 61 68.9
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 3.7e-13 79.0 63 68.3
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 4.9e-13 78.6 61 68.9
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 6.4e-13 78.2 85 52.9
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 6.4e-13 78.2 63 66.7
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 8.3e-13 77.8 61 63.9
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 8.3e-13 77.8 63 65.1
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 8.3e-13 77.8 56 69.6
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.1e-12 77.4 63 65.1
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.1e-12 77.4 58 69.0
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.4e-12 77.0 62 66.1
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.4e-12 77.0 67 62.7
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 1.4e-12 77.0 63 61.9
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.4e-12 77.0 66 62.1
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.4e-12 76.3 61 63.9
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 2.4e-12 76.3 58 67.2
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.4e-12 76.3 58 67.2
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.4e-12 76.3 58 67.2
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.4e-12 76.3 58 67.2
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 2.4e-12 76.3 57 70.2
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 2.4e-12 76.3 87 49.4
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.4e-12 76.3 63 63.5
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 2.4e-12 76.3 88 51.1
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.4e-12 76.3 62 64.5
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.4e-12 76.3 63 63.5
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 2.4e-12 76.3 57 70.2
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 3.2e-12 75.9 62 64.5
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 4.1e-12 75.5 63 65.1
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 4.1e-12 75.5 57 71.9
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.1e-12 75.5 61 67.2
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.4e-12 75.1 65 61.5
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 5.4e-12 75.1 67 58.2
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 7.1e-12 74.7 172 36.6
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 7.1e-12 74.7 62 62.9
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.1e-12 74.7 61 65.6
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 7.1e-12 74.7 61 65.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 7.1e-12 74.7 55 70.9
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 7.1e-12 74.7 63 65.1
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 7.1e-12 74.7 85 49.4
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.2e-12 74.3 57 68.4
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.2e-12 74.3 57 68.4
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 9.2e-12 74.3 61 63.9
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 9.2e-12 74.3 57 68.4
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.2e-11 73.9 81 50.6
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.6e-11 73.6 61 63.9
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 1.6e-11 73.6 56 66.1
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.6e-11 73.6 60 61.7
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 2.1e-11 73.2 62 59.7
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.1e-11 73.2 62 59.7
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 2.1e-11 73.2 62 59.7
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.1e-11 73.2 73 54.8
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 3.5e-11 72.4 62 59.7
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.5e-11 72.4 61 63.9
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 3.5e-11 72.4 60 61.7
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 4.6e-11 72.0 60 63.3
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.6e-11 72.0 61 65.6
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 4.6e-11 72.0 54 70.4
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 4.6e-11 72.0 57 64.9
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 4.6e-11 72.0 73 53.4
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 6.0e-11 71.6 69 49.3
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 6.0e-11 71.6 69 49.3
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 6.0e-11 71.6 57 63.2
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 6.0e-11 71.6 55 69.1
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 7.8e-11 71.2 59 62.7
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 7.8e-11 71.2 59 62.7
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 7.8e-11 71.2 57 63.2
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.0e-10 70.9 55 63.6
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.3e-10 70.5 66 59.1
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.7e-10 70.1 62 64.5
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.7e-10 70.1 63 58.7
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 2.3e-10 69.7 57 63.2
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.1e-10 68.6 48 66.7
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 5.1e-10 68.6 62 58.1
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 5.1e-10 68.6 62 58.1
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 6.6e-10 68.2 55 67.3
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.1e-09 67.4 55 61.8
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.1e-09 67.4 55 61.8
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.5e-09 67.0 92 45.7
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.9e-09 66.6 57 61.4
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.9e-09 66.6 57 63.2
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 5.6e-09 65.1 50 68.0
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 7.3e-09 64.7 83 45.8
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 7.3e-09 64.7 83 45.8
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 7.3e-09 64.7 75 50.7
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 1.2e-08 63.9 50 66.0
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.6e-08 63.5 54 59.3
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.6e-08 63.5 53 60.4
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.6e-08 63.5 53 60.4
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 2.1e-08 63.2 70 47.1
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 2.8e-08 62.8 48 62.5
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.8e-08 62.8 57 59.6
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 3.6e-08 62.4 58 50.0
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 3.6e-08 62.4 47 63.8
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 6.2e-08 61.6 43 72.1
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 6.2e-08 61.6 49 63.3
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 6.2e-08 61.6 47 63.8
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 8.1e-08 61.2 48 62.5
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 4.0e-07 58.9 62 45.2
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 4.0e-07 58.9 62 45.2
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 6.8e-07 58.2 54 55.6
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 6.8e-07 58.2 56 55.4
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 8.9e-07 57.8 56 50.0
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.5e-06 57.0 58 55.2
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.0e-06 56.6 63 46.0
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 3.4e-06 55.8 41 61.0
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 3.4e-06 55.8 47 57.4
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 3.4e-06 55.8 148 35.8
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 4.4e-06 55.5 56 51.8
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 4.4e-06 55.5 53 50.9
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 4.4e-06 55.5 63 46.0
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.4e-06 55.5 63 52.4
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 5.8e-06 55.1 64 48.4
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 5.8e-06 55.1 53 58.5
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 7.6e-06 54.7 92 40.2
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 9.9e-06 54.3 44 59.1


User provided reference genes

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