Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G03060 Striga asiatica HOM05D005894 ORTHO05D007461 1.4e-178 629.4 299 100.0
MSTRG.26254 Avicennia marina HOM05D005894 ORTHO05D007461 1.9e-114 416.4 267 70.4
Migut.B01913 Erythranthe guttata HOM05D005894 ORTHO05D007461 2.4e-114 416.0 306 65.0
MSTRG.20916 Avicennia marina HOM05D005894 ORTHO05D007461 2.2e-107 392.9 292 65.8
SalBow6G4791 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.9e-106 389.8 312 61.2
SalBow3G0292 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.5e-103 380.2 208 80.3
SalBow3G4666 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.5e-103 380.2 208 80.3
Hma1.2p1_0309F.1_g120580 Hydrangea macrophylla HOM05D005894 ORTHO05D007461 1.0e-91 340.9 226 66.4
TAR375G0623 Trochodendron aralioides HOM05D005894 ORTHO05D007461 1.3e-91 340.5 241 63.9
unitig_52.g17564 Utricularia gibba HOM05D005894 ORTHO05D007461 8.5e-91 337.8 290 57.9
HanXRQChr16g0524851 Helianthus annuus HOM05D005894 ORTHO05D007461 1.9e-90 336.7 233 64.4
MSTRG.20917 Avicennia marina HOM05D005894 ORTHO05D007461 2.1e-89 333.2 300 54.0
Oeu042964.1 Olea europaea HOM05D005894 ORTHO05D007461 2.1e-89 333.2 243 61.7
Nn3g18834 Nelumbo nucifera HOM05D005894 ORTHO05D007461 3.6e-89 332.4 275 58.5
Actinidia20275 Actinidia chinensis HOM05D005894 ORTHO05D007461 1.0e-88 330.9 301 55.1
ClCG06G002760 Citrullus lanatus HOM05D005894 ORTHO05D007461 5.1e-88 328.6 226 65.5
Rhsim07G0001000 Rhododendron simsii HOM05D005894 ORTHO05D007461 5.1e-88 328.6 234 62.8
ECA234G4535 Erigeron canadensis HOM05D005894 ORTHO05D007461 1.1e-87 327.4 289 56.4
Lsat_1_v5_gn_4_31980 Lactuca sativa HOM05D005894 ORTHO05D007461 1.1e-87 327.4 233 64.4
HanXRQChr17g0563091 Helianthus annuus HOM05D005894 ORTHO05D007461 1.5e-87 327.0 282 56.0
Lsat_1_v5_gn_4_31960 Lactuca sativa HOM05D005894 ORTHO05D007461 1.7e-86 323.6 281 55.5
Solyc01g096380.1 Solanum lycopersicum HOM05D005894 ORTHO05D007461 1.7e-86 323.6 240 63.3
Sed0016091 Sechium edule HOM05D005894 ORTHO05D007461 2.2e-86 323.2 291 55.7
CAN.G1045.39 Capsicum annuum HOM05D005894 ORTHO05D007461 3.7e-86 322.4 305 52.8
MELO3C022251.2 Cucumis melo HOM05D005894 ORTHO05D007461 1.4e-85 320.5 244 61.1
CsaV3_6G008930 Cucumis sativus L. HOM05D005894 ORTHO05D007461 1.4e-85 320.5 227 63.9
PGSC0003DMG400018381 Solanum tuberosum HOM05D005894 ORTHO05D007461 1.4e-85 320.5 240 61.7
Cc02_g39840 Coffea canephora HOM05D005894 ORTHO05D007461 2.4e-85 319.7 339 51.6
vmacro04295 Vaccinium macrocarpon HOM05D005894 ORTHO05D007461 3.1e-85 319.3 279 55.2
Sed0008841 Sechium edule HOM05D005894 ORTHO05D007461 4.1e-85 318.9 227 63.4
Sc01g0002310 Simmondsia chinensis HOM05D005894 ORTHO05D007461 4.1e-85 318.9 279 55.9
Sopen00g010520 Solanum pennellii HOM05D005894 ORTHO05D007461 5.3e-85 318.5 240 61.7
Haze_15713 Corylus avellana HOM05D005894 ORTHO05D007461 9.1e-85 317.8 293 52.6
unitig_744.g24593 Utricularia gibba HOM05D005894 ORTHO05D007461 2.0e-84 316.6 271 57.2
Peaxi162Scf00767g00044 Petunia axillaris HOM05D005894 ORTHO05D007461 3.4e-84 315.8 312 50.6
MBI04_g25320_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 4.5e-84 315.5 230 62.6
unitig_744.g24591 Utricularia gibba HOM05D005894 ORTHO05D007461 4.5e-84 315.5 266 56.4
A10p00720 Brassica napus HOM05D005894 ORTHO05D007461 5.9e-84 315.1 293 53.2
CiPaw.01G080700 Carya illinoinensis HOM05D005894 ORTHO05D007461 5.9e-84 315.1 226 61.9
Haze_15704 Corylus avellana HOM05D005894 ORTHO05D007461 5.9e-84 315.1 293 52.2
Glyma.07G051400 Glycine max HOM05D005894 ORTHO05D007461 1.0e-83 314.3 310 49.7
THA.LOC104801356 Tarenaya hassleriana HOM05D005894 ORTHO05D007461 1.0e-83 314.3 228 64.0
arahy.Tifrunner.gnm1.ann1.IJN1JI Arachis hypogaea HOM05D005894 ORTHO05D007461 1.3e-83 313.9 229 61.1
arahy.Tifrunner.gnm1.ann1.UMNZ42 Arachis hypogaea HOM05D005894 ORTHO05D007461 1.3e-83 313.9 229 61.1
arahy.Tifrunner.gnm1.ann1.YB3WUJ Arachis hypogaea HOM05D005894 ORTHO05D007461 1.3e-83 313.9 229 61.1
PSO063G1123 Papaver somniferum HOM05D005894 ORTHO05D007461 1.3e-83 313.9 246 59.3
Cpa.g.sc141.18 Carica papaya HOM05D005894 ORTHO05D007461 1.7e-83 313.5 227 61.2
BraA10t42349Z Brassica rapa HOM05D005894 ORTHO05D007461 2.2e-83 313.2 293 52.9
Manes.01G241500 Manihot esculenta HOM05D005894 ORTHO05D007461 2.2e-83 313.2 285 52.6
Cfa003752 Carpinus fangiana HOM05D005894 ORTHO05D007461 2.9e-83 312.8 293 52.9
Nitab4.5_0000307g0270 Nicotiana tabacum HOM05D005894 ORTHO05D007461 2.9e-83 312.8 240 60.0
Ah.05g179110 Amaranthus hybridus HOM05D005894 ORTHO05D007461 6.5e-83 311.6 235 60.9
arahy.Tifrunner.gnm1.ann1.FN9JYV Arachis hypogaea HOM05D005894 ORTHO05D007461 8.5e-83 311.2 229 60.3
QL08p046715 Quercus lobata HOM05D005894 ORTHO05D007461 3.2e-82 309.3 301 51.2
Sabra02G0136100 Salix brachista HOM05D005894 ORTHO05D007461 3.2e-82 309.3 284 52.1
Potri.002G177500 Populus trichocarpa HOM05D005894 ORTHO05D007461 4.2e-82 308.9 284 51.4
TWI14G1398 Tripterygium wilfordii HOM05D005894 ORTHO05D007461 4.2e-82 308.9 295 51.9
C05p00760 Brassica napus HOM05D005894 ORTHO05D007461 7.2e-82 308.1 228 61.8
unitig_21.g20086 Utricularia gibba HOM05D005894 ORTHO05D007461 7.2e-82 308.1 267 55.1
Aa31LG1G10550 Aethionema arabicum HOM05D005894 ORTHO05D007461 1.6e-81 307.0 234 60.3
Sc01g0002320 Simmondsia chinensis HOM05D005894 ORTHO05D007461 2.1e-81 306.6 290 51.0
Carub.0001s0103 Capsella rubella HOM05D005894 ORTHO05D007461 2.7e-81 306.2 228 60.5
BolC5t28860H Brassica oleracea HOM05D005894 ORTHO05D007461 3.6e-81 305.8 228 61.4
SEGI_06461 Sequoiadendron giganteum HOM05D005894 ORTHO05D007461 6.1e-81 305.1 230 60.9
CARHR001290 Cardamine hirsuta HOM05D005894 ORTHO05D007461 7.9e-81 304.7 228 61.0
AL1G11320 Arabidopsis lyrata HOM05D005894 ORTHO05D007461 1.4e-80 303.9 228 60.5
BcaB03g13563 Brassica carinata HOM05D005894 ORTHO05D007461 1.8e-80 303.5 228 61.0
Thhalv10008287m.g Eutrema salsugineum HOM05D005894 ORTHO05D007461 1.8e-80 303.5 239 59.0
Phvul.010G118000 Phaseolus vulgaris HOM05D005894 ORTHO05D007461 2.3e-80 303.1 229 59.0
Lj3g0011008 Lotus japonicus HOM05D005894 ORTHO05D007461 3.9e-80 302.4 297 51.9
Atru.chr5.746 Acer truncatum HOM05D005894 ORTHO05D007461 5.1e-80 302.0 227 57.7
AUR62004546 Chenopodium quinoa HOM05D005894 ORTHO05D007461 5.1e-80 302.0 300 51.0
Sp1g01110 Schrenkiella parvula HOM05D005894 ORTHO05D007461 5.1e-80 302.0 228 61.0
AUR62022660 Chenopodium quinoa HOM05D005894 ORTHO05D007461 8.8e-80 301.2 223 61.4
Ciclev10023878m.g Citrus clementina HOM05D005894 ORTHO05D007461 1.5e-79 300.4 229 59.0
FAN10G2153 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.0e-79 300.1 287 50.9
Medtr8g024680 Medicago truncatula HOM05D005894 ORTHO05D007461 2.6e-79 299.7 228 57.9
Potri.014G103800 Populus trichocarpa HOM05D005894 ORTHO05D007461 2.6e-79 299.7 290 51.0
VMungo0331G1846 Vigna mungo HOM05D005894 ORTHO05D007461 2.6e-79 299.7 308 48.1
Lalb_Chr17g0342931 Lupinus albus HOM05D005894 ORTHO05D007461 3.3e-79 299.3 228 58.3
AT1G01180 Arabidopsis thaliana HOM05D005894 ORTHO05D007461 4.4e-79 298.9 227 60.4
Lj9P603T40 Lonicera japonica HOM05D005894 ORTHO05D007461 4.4e-79 298.9 203 64.5
FAN10G4192 Fragaria x ananassa HOM05D005894 ORTHO05D007461 7.4e-79 298.1 288 50.0
Sc01g0000420 Simmondsia chinensis HOM05D005894 ORTHO05D007461 7.4e-79 298.1 235 57.0
Ah.07g207870 Amaranthus hybridus HOM05D005894 ORTHO05D007461 9.7e-79 297.7 233 58.8
COL.COLO4_06220 Corchorus olitorius HOM05D005894 ORTHO05D007461 9.7e-79 297.7 223 59.2
FAN03G0327 Fragaria x ananassa HOM05D005894 ORTHO05D007461 9.7e-79 297.7 288 50.0
TPR.G14294 Trifolium pratense HOM05D005894 ORTHO05D007461 9.7e-79 297.7 268 51.1
FAN06G1719 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.3e-78 297.4 234 56.4
Gohir.A07G134700 Gossypium hirsutum HOM05D005894 ORTHO05D007461 1.7e-78 297.0 293 48.1
PSO782G1789 Papaver somniferum HOM05D005894 ORTHO05D007461 1.7e-78 297.0 246 57.7
Ca_23494_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 2.8e-78 296.2 228 58.3
Ca_29944_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 2.8e-78 296.2 228 58.3
ATR0090G035 Amborella trichopoda HOM05D005894 ORTHO05D007461 4.8e-78 295.4 230 60.4
Dinv32633 Davidia involucrata HOM05D005894 ORTHO05D007461 2.4e-77 293.1 296 51.0
Gorai.001G151400 Gossypium raimondii HOM05D005894 ORTHO05D007461 4.1e-77 292.4 293 47.4
Psat4g216640 Pisum sativum HOM05D005894 ORTHO05D007461 1.2e-76 290.8 302 48.7
Prupe.2G195400 Prunus persica HOM05D005894 ORTHO05D007461 1.5e-76 290.4 303 49.2
Duzib138G0081 Durio zibethinus HOM05D005894 ORTHO05D007461 3.5e-76 289.3 311 47.3
Lj2g0016031 Lotus japonicus HOM05D005894 ORTHO05D007461 7.7e-76 288.1 286 52.4
MD07G1156900 Malus domestica HOM05D005894 ORTHO05D007461 1.3e-75 287.3 227 57.3
Thecc.01G335500 Theobroma cacao HOM05D005894 ORTHO05D007461 8.5e-75 284.6 305 46.9
Duzib133G0870 Durio zibethinus HOM05D005894 ORTHO05D007461 1.1e-74 284.3 300 46.3
QL08p046701 Quercus lobata HOM05D005894 ORTHO05D007461 1.6e-73 280.4 213 60.1
Gohir.A12G115600 Gossypium hirsutum HOM05D005894 ORTHO05D007461 1.5e-71 273.9 296 46.3
Gohir.D12G119200 Gossypium hirsutum HOM05D005894 ORTHO05D007461 4.4e-71 272.3 286 46.2
MBI04_g22377_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 1.7e-70 270.4 231 57.1
Haze_15705 Corylus avellana HOM05D005894 ORTHO05D007461 1.4e-69 267.3 254 51.6
Pp3c20_5150 Physcomitrium patens HOM05D005894 ORTHO05D007461 1.8e-69 266.9 231 51.5
unitig_744.g24581 Utricularia gibba HOM05D005894 ORTHO05D007461 1.2e-68 264.2 260 52.7
AagrBONN_evm.TU.Sc2ySwM_228.2264 Anthoceros agrestis HOM05D005894 ORTHO05D007461 3.5e-68 262.7 232 52.2
Pp3c23_20890 Physcomitrium patens HOM05D005894 ORTHO05D007461 1.0e-67 261.2 220 52.7
Mapoly0044s0088 Marchantia polymorpha HOM05D005894 ORTHO05D007461 2.2e-67 260.0 231 52.4
TPR.G25260 Trifolium pratense HOM05D005894 ORTHO05D007461 6.5e-67 258.5 185 61.6
EL10Ac5g10561 Beta vulgaris HOM05D005894 ORTHO05D007461 1.8e-64 250.4 233 50.6
Gorai.008G129200 Gossypium raimondii HOM05D005894 ORTHO05D007461 3.0e-64 249.6 198 56.1
Os09g0518900 Oryza sativa ssp. japonica HOM05D005894 ORTHO05D007461 5.2e-64 248.8 236 51.3
FAN01G2899 Fragaria x ananassa HOM05D005894 ORTHO05D007461 6.7e-64 248.4 201 53.7
Zm00001eb102910 Zea mays HOM05D005894 ORTHO05D007461 6.7e-64 248.4 234 52.1
Zm00001eb102940 Zea mays HOM05D005894 ORTHO05D007461 6.7e-64 248.4 234 52.1
Gohir.D07G139300 Gossypium hirsutum HOM05D005894 ORTHO05D007461 1.7e-59 233.8 245 46.1
Oeu022737.1 Olea europaea HOM05D005894 ORTHO05D007461 9.4e-58 228.0 149 67.1
FAN06G4171 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.1e-45 188.0 133 61.7
Sc17g0001460 Simmondsia chinensis HOM05D005894 ORTHO05D387453 2.9e-43 179.9 226 41.6
EL10Ac1g00202 Beta vulgaris HOM05D005894 ORTHO05D007461 1.2e-39 167.9 137 59.9
SMO367G0414 Selaginella moellendorffii HOM05D005894 ORTHO05D007461 7.0e-37 158.7 137 52.6
unitig_21.g20129 Utricularia gibba HOM05D005894 ORTHO05D007461 2.5e-34 150.2 101 63.4
RcHm_v2.0_Chr1g0360831 Rosa chinensis HOM05D005894 ORTHO05D007461 2.8e-33 146.7 123 54.5
RcHm_v2.0_Chr1g0360821 Rosa chinensis HOM05D005894 ORTHO05D007461 8.9e-32 141.7 104 57.7
Sc22g0003370 Simmondsia chinensis HOM05D005894 ORTHO05D007461 1.0e-19 101.7 83 53.0
unitig_21.g20130 Utricularia gibba HOM05D005894 ORTHO05D007461 1.3e-19 101.3 112 42.0
unitig_52.g17562 Utricularia gibba HOM05D005894 ORTHO05D420364 1.8e-16 90.9 71 57.7
SMO195G0042 Selaginella moellendorffii HOM05D005894 ORTHO05D376219 8.4e-06 55.5 58 44.8


User provided reference genes

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