Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G03033 Striga asiatica HOM05D000003 ORTHO05D000006 1.1e-209 733.0 369 100.0
SGA_v2.0_scaffold154G37136 Striga asiatica HOM05D017085 ORTHO05D000006 2.8e-19 100.5 73 58.9
SGA_v2.0_scaffold8G04556 Striga asiatica HOM05D000024 ORTHO05D000006 1.2e-14 85.1 74 52.7
SGA_v2.0_scaffold6G03465 Striga asiatica HOM05D000003 ORTHO05D000006 2.1e-14 84.3 72 54.2
SGA_v2.0_scaffold221G42729 Striga asiatica HOM05D000003 ORTHO05D000006 2.7e-14 84.0 157 33.1
SGA_v2.0_scaffold12G05963 Striga asiatica HOM05D000003 ORTHO05D000006 3.9e-13 80.1 73 50.7
SGA_v2.0_scaffold55G19740 Striga asiatica HOM05D000003 ORTHO05D000004 5.1e-13 79.7 185 27.6
SGA_v2.0_scaffold18G08392 Striga asiatica HOM05D000003 ORTHO05D000006 1.1e-12 78.6 73 50.7
SGA_v2.0_scaffold139G35393 Striga asiatica HOM05D000003 ORTHO05D000006 1.5e-12 78.2 73 49.3
Rhsim11G0021500 Rhododendron simsii HOM05D002187 ORTHO05D002243 1.9e-12 77.8 231 29.9
SGA_v2.0_scaffold64G22078 Striga asiatica HOM05D000003 ORTHO05D000006 5.7e-12 76.3 79 49.4
SGA_v2.0_scaffold74G24657 Striga asiatica HOM05D000003 ORTHO05D000006 5.7e-12 76.3 79 46.8
SGA_v2.0_scaffold165G38197 Striga asiatica HOM05D000003 ORTHO05D000006 1.3e-11 75.1 73 46.6
SGA_v2.0_scaffold107G30811 Striga asiatica HOM05D000003 ORTHO05D000006 2.2e-11 74.3 111 36.9
SGA_v2.0_scaffold451G51811 Striga asiatica HOM05D058879 ORTHO05D000006 2.2e-11 74.3 72 45.8
SGA_v2.0_scaffold29G12078 Striga asiatica HOM05D000003 ORTHO05D000006 6.3e-11 72.8 69 46.4
SGA_v2.0_scaffold55G19859 Striga asiatica HOM05D000003 ORTHO05D000006 1.4e-10 71.6 87 41.4
SGA_v2.0_scaffold67G22780 Striga asiatica HOM05D000003 ORTHO05D000006 1.8e-10 71.2 73 43.8
SGA_v2.0_scaffold134G34702 Striga asiatica HOM05D006612 ORTHO05D009014 2.4e-10 70.9 69 44.9
SGA_v2.0_scaffold1G00690 Striga asiatica HOM05D000003 ORTHO05D000004 2.4e-10 70.9 73 45.2
SGA_v2.0_scaffold116G32202 Striga asiatica HOM05D000024 ORTHO05D000006 3.1e-10 70.5 69 49.3
SGA_v2.0_scaffold17G08062 Striga asiatica HOM05D000003 ORTHO05D000006 3.1e-10 70.5 85 42.4
SGA_v2.0_scaffold43G16292 Striga asiatica HOM05D000003 ORTHO05D000006 3.1e-10 70.5 85 45.9
SGA_v2.0_scaffold84G26526 Striga asiatica HOM05D018498 ORTHO05D000006 3.1e-10 70.5 74 45.9
SGA_v2.0_scaffold298G47692 Striga asiatica HOM05D000003 ORTHO05D000006 4.1e-10 70.1 70 42.9
SGA_v2.0_scaffold9G04700 Striga asiatica HOM05D000003 ORTHO05D000006 1.2e-09 68.6 72 50.0
SGA_v2.0_scaffold16G07515 Striga asiatica HOM05D041003 ORTHO05D000006 2.0e-09 67.8 70 44.3
SGA_v2.0_scaffold83G26411 Striga asiatica HOM05D000003 ORTHO05D000006 2.0e-09 67.8 73 42.5
SGA_v2.0_scaffold56G19930 Striga asiatica HOM05D000003 ORTHO05D000006 2.6e-09 67.4 73 42.5
QL05p051227 Quercus lobata HOM05D000003 ORTHO05D000004 3.4e-09 67.0 336 21.4
SGA_v2.0_scaffold301G47800 Striga asiatica HOM05D000003 ORTHO05D000006 3.4e-09 67.0 69 44.9
PSO751G0004 Papaver somniferum HOM05D000003 ORTHO05D000004 4.5e-09 66.6 138 25.4
Sopen02g008700 Solanum pennellii HOM05D000003 ORTHO05D000022 7.7e-09 65.9 194 26.8
FvH4_6g23032 Fragaria vesca HOM05D000003 ORTHO05D017879 1.0e-08 65.5 74 37.8
QL04p086524 Quercus lobata HOM05D000003 ORTHO05D000006 1.3e-08 65.1 150 30.0
SGA_v2.0_scaffold151G36755 Striga asiatica HOM05D000003 ORTHO05D000004 2.2e-08 64.3 70 37.1
PSO339G5498 Papaver somniferum HOM05D000003 ORTHO05D000004 3.8e-08 63.5 218 24.8
SGA_v2.0_scaffold137G35138 Striga asiatica HOM05D000003 ORTHO05D000006 3.8e-08 63.5 62 51.6
SGA_v2.0_scaffold23G10019 Striga asiatica HOM05D000003 ORTHO05D000004 3.8e-08 63.5 74 43.2
Solyc02g084031.1 Solanum lycopersicum HOM05D007931 ORTHO05D000006 5.0e-08 63.2 116 34.5
Atru.chr4.707 Acer truncatum HOM05D000003 ORTHO05D000006 6.5e-08 62.8 152 25.7
AUR62014861 Chenopodium quinoa HOM05D000003 ORTHO05D000004 8.5e-08 62.4 177 26.6
FvH4_1g17821 Fragaria vesca HOM05D000003 ORTHO05D046457 8.5e-08 62.4 94 31.9
MBI14_g11584_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 8.5e-08 62.4 108 33.3
CANSAT01G2554 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-07 62.0 79 44.3
Nitab4.5_0001243g0060 Nicotiana tabacum HOM05D015265 ORTHO05D014660 1.1e-07 62.0 114 33.3
QL01p027762 Quercus lobata HOM05D000003 ORTHO05D000006 1.1e-07 62.0 82 39.0
QL01p027824 Quercus lobata HOM05D000003 ORTHO05D000006 1.1e-07 62.0 82 39.0
Rhsim04G0061100 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.1e-07 62.0 177 26.0
QL02p000576 Quercus lobata HOM05D002132 ORTHO05D002168 1.4e-07 61.6 141 31.2
Rhsim01G0048000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-07 61.6 75 34.7
Rhsim03G0095700 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-07 61.6 70 42.9
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 1.4e-07 61.6 75 34.7
SHI33536 Sapria himalayana HOM05D000024 ORTHO05D000006 1.4e-07 61.6 125 32.0
SGA_v2.0_scaffold409G51103 Striga asiatica HOM05D000003 ORTHO05D000006 1.4e-07 61.6 74 40.5
CANSAT56G0584 Cannabis sativa HOM05D000003 ORTHO05D000006 1.9e-07 61.2 87 39.1
CANSAT64G0941 Cannabis sativa HOM05D000003 ORTHO05D000006 1.9e-07 61.2 79 39.2
CANSAT21G0732 Cannabis sativa HOM05D000003 ORTHO05D000006 3.2e-07 60.5 80 40.0
CANSAT35G0159 Cannabis sativa HOM05D000003 ORTHO05D000006 3.2e-07 60.5 118 29.7
Cpa.g.sc263.17 Carica papaya HOM05D000003 ORTHO05D000006 3.2e-07 60.5 116 35.3
CiPaw.09G198500 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.2e-07 60.5 71 39.4
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 3.2e-07 60.5 86 38.4
QL08p005297 Quercus lobata HOM05D000003 ORTHO05D000006 3.2e-07 60.5 73 41.1
Lj2P943T7 Lonicera japonica HOM05D000003 ORTHO05D000006 4.2e-07 60.1 101 32.7
QL03p010778 Quercus lobata HOM05D000003 ORTHO05D000006 4.2e-07 60.1 72 40.3
Atru.chr10.299 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-07 59.7 83 36.1
Prupe.3G135000 Prunus persica HOM05D000003 ORTHO05D000004 5.5e-07 59.7 74 39.2
TWI80G0001 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 5.5e-07 59.7 72 40.3
MBI18_g07909_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 7.2e-07 59.3 121 31.4
Sopen02g028850 Solanum pennellii HOM05D015265 ORTHO05D014660 7.2e-07 59.3 73 39.7
CANSAT11G0300 Cannabis sativa HOM05D000003 ORTHO05D000006 9.4e-07 58.9 79 40.5
QL12p021894 Quercus lobata HOM05D000003 ORTHO05D000006 9.4e-07 58.9 85 40.0
Atru.chr6.1087 Acer truncatum HOM05D000003 ORTHO05D000006 1.2e-06 58.5 76 35.5
CANSAT56G0694 Cannabis sativa HOM05D000003 ORTHO05D000006 1.2e-06 58.5 69 40.6
AUR62033673 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.2e-06 58.5 77 39.0
PSO478G1945 Papaver somniferum HOM05D000003 ORTHO05D000006 1.2e-06 58.5 95 30.5
Rhsim11G0149500 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-06 58.5 151 27.8
CSS0009100 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D000006 1.6e-06 58.2 81 33.3
CANSAT25G2690 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 58.2 149 29.5
CANSAT35G0171 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 58.2 73 35.6
CANSAT64G1616 Cannabis sativa HOM05D000003 ORTHO05D000006 1.6e-06 58.2 69 42.0
CANSAT78G1656 Cannabis sativa HOM05D000003 ORTHO05D000006 1.6e-06 58.2 74 35.1
CANSAT78G1838 Cannabis sativa HOM05D000003 ORTHO05D000006 1.6e-06 58.2 69 42.0
PSO782G1639 Papaver somniferum HOM05D000003 ORTHO05D000006 1.6e-06 58.2 107 28.0
Ah.10g031070 Amaranthus hybridus HOM05D000003 ORTHO05D000006 2.1e-06 57.8 110 33.6
CANSAT21G0004 Cannabis sativa HOM05D000003 ORTHO05D000006 2.1e-06 57.8 56 46.4
CANSAT80G0112 Cannabis sativa HOM05D000003 ORTHO05D000006 2.1e-06 57.8 87 35.6
COL.COLO4_08907 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.1e-06 57.8 69 39.1
Nitab4.5_0011919g0030 Nicotiana tabacum HOM05D015265 ORTHO05D014660 2.1e-06 57.8 97 33.0
QL02p003261 Quercus lobata HOM05D000232 ORTHO05D000126 2.1e-06 57.8 70 37.1
Aqoxy37s006 Aquilegia oxysepala HOM05D000024 ORTHO05D000006 2.7e-06 57.4 72 33.3
COL.COLO4_00029 Corchorus olitorius HOM05D000003 ORTHO05D000006 2.7e-06 57.4 69 34.8
QL06p049150 Quercus lobata HOM05D000003 ORTHO05D000007 2.7e-06 57.4 82 35.4
Rhsim03G0125100 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.7e-06 57.4 74 40.5
Rhsim08G0012400 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.7e-06 57.4 74 40.5
Rhsim09G0106200 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.7e-06 57.4 79 38.0
Rhsim13G0210000 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.7e-06 57.4 79 38.0
SGA_v2.0_scaffold176G39399 Striga asiatica HOM05D024619 ORTHO05D000006 2.7e-06 57.4 63 44.4
TPR.G26705 Trifolium pratense HOM05D001177 ORTHO05D001507 2.7e-06 57.4 84 36.9
TPR.G29120 Trifolium pratense HOM05D000003 ORTHO05D000004 2.7e-06 57.4 84 36.9
HPP92_014391 Vanilla planifolia HOM05D000024 ORTHO05D000006 2.7e-06 57.4 80 37.5
Actinidia31222 Actinidia chinensis HOM05D000003 ORTHO05D000006 3.6e-06 57.0 73 32.9
MBI10_g15980_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.6e-06 57.0 117 32.5
Sabra06G0000400 Salix brachista HOM05D000003 ORTHO05D000004 3.6e-06 57.0 143 31.5
SHI02062 Sapria himalayana HOM05D000003 ORTHO05D000004 3.6e-06 57.0 74 36.5
Atru.chr12.2516 Acer truncatum HOM05D000003 ORTHO05D000006 4.6e-06 56.6 92 32.6
Atru.chr6.1099 Acer truncatum HOM05D000003 ORTHO05D000006 4.6e-06 56.6 76 34.2
CANSAT54G2459 Cannabis sativa HOM05D000003 ORTHO05D000006 4.6e-06 56.6 92 33.7
AUR62031348 Chenopodium quinoa HOM05D000003 ORTHO05D000006 4.6e-06 56.6 129 27.9
AUR62035763 Chenopodium quinoa HOM05D000003 ORTHO05D000006 4.6e-06 56.6 52 50.0
Rhsim04G0083800 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.6e-06 56.6 79 36.7
SGA_v2.0_scaffold113G31740 Striga asiatica HOM05D000003 ORTHO05D000004 4.6e-06 56.6 55 43.6
SGA_v2.0_scaffold259G45819 Striga asiatica HOM05D000003 ORTHO05D000004 4.6e-06 56.6 150 25.3
Ah.13g073890 Amaranthus hybridus HOM05D000003 ORTHO05D000006 6.1e-06 56.2 85 37.6
CANSAT56G0110 Cannabis sativa HOM05D000003 ORTHO05D000006 6.1e-06 56.2 80 37.5
COL.COLO4_20949 Corchorus olitorius HOM05D000003 ORTHO05D000006 6.1e-06 56.2 73 35.6
MBI15_g18587_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 6.1e-06 56.2 69 39.1
Aqoxy3G01336 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.9e-06 55.8 81 33.3
AUR62004939 Chenopodium quinoa HOM05D000003 ORTHO05D000006 7.9e-06 55.8 87 34.5
SHI32658 Sapria himalayana HOM05D000024 ORTHO05D000006 7.9e-06 55.8 70 38.6


User provided reference genes

Program Settings