Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 5029.5 2478 100.0
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 3263.4 2490 66.6
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2538.5 2543 52.7
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2408.6 2545 50.7
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2321.6 2515 49.7
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2314.7 2515 49.6
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2314.3 2514 49.6
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2306.9 2554 48.8
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2303.5 2493 49.8
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2296.9 2526 49.2
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2238.8 2538 48.3
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 2199.5 2562 47.0
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 2191.4 2563 46.7
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 2167.5 2545 47.4
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2164.4 2600 46.8
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2152.9 2557 46.9
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 2152.1 2549 46.5
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 2151.3 2584 46.2
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 2150.2 2626 46.2
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2134.8 2525 46.3
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 2133.2 2562 46.4
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2125.5 2545 46.4
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2125.5 2574 46.0
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2125.1 2562 46.3
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2122.8 2584 46.0
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2122.4 2574 46.2
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2121.7 2575 45.7
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2119.4 2562 46.3
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2116.7 2518 46.6
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2115.1 2574 45.9
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2109.3 2560 46.2
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2100.5 2582 45.7
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2098.6 2568 45.7
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2098.6 2568 45.7
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 2071.2 2480 46.2
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2053.9 2569 45.0
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2028.4 2589 44.7
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2010.3 2562 44.6
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2006.5 2418 46.1
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 1986.1 2562 44.2
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 1983.8 2495 45.1
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 1979.1 2533 43.8
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 1976.1 2558 44.2
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 1973.7 2540 43.8
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 1973.4 2533 43.7
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 1969.5 2546 43.4
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 1964.1 2548 43.9
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1959.1 2552 43.2
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 1952.2 2547 44.2
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 1940.2 2520 43.8
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 1939.1 2591 43.1
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 1924.8 2551 42.7
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 1916.0 2559 42.9
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 1880.5 2581 42.8
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 1877.4 2573 42.5
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 1876.3 2372 45.3
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 1863.6 2567 42.3
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 1858.6 2548 42.0
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1857.8 2528 42.9
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1854.7 2535 42.6
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 1851.3 2500 44.0
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 1845.1 2561 42.3
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 1841.6 2571 42.9
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 1829.7 2553 42.4
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 1818.9 2554 42.2
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1817.4 2479 43.0
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 1817.0 2545 42.2
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 1808.9 2560 41.7
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 1808.5 2398 42.6
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 1805.4 2548 41.9
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 1795.0 2565 41.5
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 1793.5 2552 42.0
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 1791.2 2528 42.0
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1785.4 2528 41.8
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1774.2 2526 41.6
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 1765.7 2527 41.6
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 1714.5 2539 41.0
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1703.3 2534 40.4
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1657.1 1941 47.7
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1512.3 2544 37.1
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1442.6 1918 43.6
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1366.7 1873 41.8
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1355.1 2568 34.9
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1315.1 1975 40.9
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1312.0 1335 50.9
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1237.2 1355 47.8
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1229.5 1338 49.5
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1170.2 1542 45.1
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1160.6 1515 45.5
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1144.4 1519 44.7
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1095.1 1329 45.1
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 8.4e-285 985.3 2742 29.4
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.1e-272 944.1 1833 35.8
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 5.4e-268 929.5 1069 47.1
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 8.7e-266 922.2 1068 47.8
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 9.6e-265 918.7 1357 41.1
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 6.1e-251 872.8 1102 46.6
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 6.1e-243 846.3 1182 40.8
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 5.1e-242 843.2 1065 44.7
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 5.1e-242 843.2 1065 44.7
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 5.0e-197 693.7 1017 38.8
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 7.8e-182 643.3 1747 30.0
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.7e-181 642.1 564 58.9
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.6e-180 637.1 1204 35.0
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 8.9e-170 603.2 487 62.0
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 8.4e-168 596.7 1660 29.7
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.4e-162 579.3 578 52.6
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.1e-154 553.1 766 43.1
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 9.3e-151 540.0 488 54.9
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 6.0e-150 537.3 459 61.0
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 7.9e-150 537.0 669 43.5
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.8e-147 528.5 1100 35.5
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.3e-141 508.8 542 50.9
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.4e-117 429.9 535 47.9
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 3.8e-112 411.8 290 67.2
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 1.9e-111 409.5 453 46.8
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 1.5e-108 399.8 753 33.6
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 8.2e-107 394.0 923 31.1
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 1.0e-101 377.1 433 45.3
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.2e-89 337.0 1769 24.5
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 9.8e-84 317.4 229 69.0
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 6.6e-80 304.7 172 83.1
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.4e-74 287.0 230 59.6
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.4e-68 265.8 197 68.5
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 1.5e-52 213.8 368 38.0
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 3.4e-52 212.6 283 46.6
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 4.6e-49 202.2 199 49.2
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.3e-48 199.9 199 51.3
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 7.4e-39 168.3 114 71.1
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 6.9e-37 161.8 239 41.4
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 9.3e-34 151.4 265 34.7
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 3.5e-33 149.4 399 32.6
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 8.7e-32 144.8 472 28.2
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 1.2e-28 134.4 211 37.9
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 7.6e-28 131.7 234 35.0
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 7.6e-28 131.7 227 35.7
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 8.4e-27 128.3 96 59.4
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 4.2e-26 125.9 90 71.1
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 6.0e-25 122.1 96 62.5
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 2.5e-23 116.7 262 30.2
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 3.7e-22 112.8 233 31.8
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 9.0e-21 108.2 75 65.3
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 1.2e-20 107.8 170 38.2
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 2.6e-20 106.7 117 50.4
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 2.6e-20 106.7 231 34.6
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.0e-19 104.8 121 45.5
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 8.5e-19 101.7 178 36.0
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 8.5e-19 101.7 178 36.0
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.3e-16 94.4 103 50.5
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 8.7e-16 91.7 100 47.0
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 7.4e-15 88.6 100 46.0
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 3.7e-14 86.3 154 37.0
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 3.7e-14 86.3 307 25.4
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 1.3e-11 77.8 48 70.8
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 2.2e-11 77.0 102 42.2
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 4.7e-09 69.3 505 23.0
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 4.7e-09 69.3 103 36.9


User provided reference genes

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