Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.3e-209 731.5 371 100.0
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.5e-116 422.9 387 60.7
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 2.2e-104 383.3 385 55.6
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 8.3e-104 381.3 394 59.4
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.3e-98 363.2 406 53.2
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 3.0e-98 362.8 386 54.4
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 3.0e-98 362.8 386 54.4
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.9e-92 343.6 393 53.2
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.8e-91 339.7 393 52.9
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.2e-88 330.1 393 51.1
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.6e-86 323.9 394 50.0
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.7e-85 320.5 385 50.1
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 7.3e-84 315.1 388 50.0
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 2.8e-83 313.2 396 50.0
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.7e-83 312.4 391 48.1
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 8.1e-83 311.6 398 48.7
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.2e-82 308.9 377 51.7
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.8e-82 308.5 376 51.9
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.0e-81 307.0 398 47.7
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 3.4e-81 306.2 347 50.4
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.1e-79 301.2 398 48.0
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.1e-79 301.2 384 47.7
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.9e-79 300.4 389 50.4
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.1e-79 299.3 387 47.0
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 4.1e-79 299.3 389 48.3
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.6e-78 297.4 387 48.6
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 4.6e-78 295.8 389 49.9
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.5e-76 290.8 384 46.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.3e-76 289.3 402 47.5
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.1e-75 287.0 402 46.0
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 8.1e-75 285.0 420 43.8
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.5e-73 280.8 387 47.8
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 3.2e-71 273.1 407 47.4
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.6e-70 270.8 325 50.8
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.5e-70 269.6 346 49.1
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 6.0e-70 268.9 373 46.9
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 3.9e-69 266.2 387 44.7
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.9e-69 266.2 385 46.5
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.5e-68 264.2 408 45.3
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.1e-66 258.1 387 45.5
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.4e-66 256.9 379 44.3
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 4.0e-66 256.1 389 44.7
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 8.9e-66 255.0 422 41.0
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.5e-65 254.2 399 44.1
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.0e-65 253.8 390 44.4
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.3e-64 251.1 392 42.6
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 1.7e-64 250.8 393 44.5
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.9e-64 250.0 391 45.3
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 4.9e-64 249.2 390 43.3
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 4.9e-64 249.2 375 45.9
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 6.4e-64 248.8 392 44.1
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 8.4e-64 248.4 420 41.7
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 1.1e-63 248.1 389 41.9
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 4.2e-63 246.1 424 40.3
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.1e-62 243.8 389 43.7
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.7e-61 240.7 428 39.7
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.7e-61 240.7 388 41.2
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.1e-60 238.0 397 43.6
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 2.5e-60 236.9 412 42.0
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 4.3e-60 236.1 416 40.4
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 5.6e-60 235.7 397 43.3
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 5.6e-60 235.7 388 39.9
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 5.6e-60 235.7 406 41.9
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.8e-59 232.6 427 38.9
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.1e-58 231.5 276 51.8
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.1e-58 231.5 435 38.2
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.4e-58 231.1 391 40.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 1.8e-58 230.7 388 41.0
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.1e-58 229.9 402 42.3
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 4.0e-58 229.6 399 41.6
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.2e-57 228.0 430 39.8
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.5e-57 227.6 421 42.3
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.5e-57 227.6 402 41.3
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 3.4e-57 226.5 365 43.0
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.7e-56 224.2 394 40.1
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.9e-56 223.4 393 39.7
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.8e-56 223.0 402 41.5
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 3.8e-56 223.0 380 40.8
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 6.4e-56 222.2 376 40.4
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.4e-55 221.1 391 40.9
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 3.2e-55 219.9 433 38.6
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 3.2e-55 219.9 348 43.1
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.5e-54 216.5 364 40.4
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 6.7e-53 212.2 382 39.5
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.3e-52 209.9 367 40.1
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.6e-52 209.1 386 39.1
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 9.6e-52 208.4 385 40.0
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.1e-50 203.4 375 38.9
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 4.0e-50 203.0 411 37.5
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.6e-49 200.3 406 37.4
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 3.4e-49 199.9 350 40.3
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 7.6e-49 198.7 404 36.6
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.3e-48 198.0 399 42.1
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 2.2e-48 197.2 414 36.7
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 3.8e-48 196.4 403 36.5
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 3.8e-48 196.4 403 36.5
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 6.4e-48 195.7 406 36.9
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.4e-47 194.5 408 37.5
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.4e-47 194.5 371 37.5
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 1.9e-47 194.1 406 36.5
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.2e-46 191.4 285 46.7
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.2e-46 191.4 330 40.3
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 2.1e-46 190.7 386 36.5
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.7e-46 190.3 408 36.3
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.3e-45 188.0 404 36.6
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.8e-45 187.6 406 36.5
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.9e-45 186.4 403 35.5
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 2.6e-41 173.7 397 34.8
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 2.6e-41 173.7 413 34.9
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.0e-40 171.8 413 34.6
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 8.4e-40 168.7 414 34.1
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 4.2e-39 166.4 301 40.2
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 8.7e-37 158.7 418 32.5
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.1e-36 158.3 414 32.4
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 4.3e-36 156.4 258 39.9
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 7.4e-36 155.6 421 31.6
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.3e-35 154.8 498 29.3
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.8e-35 153.7 412 31.8
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.8e-35 153.7 259 42.1
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.4e-34 151.4 199 47.7
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 6.9e-34 149.1 260 39.6
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.2e-33 148.3 258 40.3
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 2.0e-33 147.5 206 42.7
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.0e-33 147.5 253 38.7
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 3.4e-33 146.7 257 37.7
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.0e-32 145.2 253 36.4
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 2.2e-32 144.1 257 36.2
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 8.5e-32 142.1 284 36.3
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.4e-31 141.4 392 31.4
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.9e-31 141.0 399 33.1
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.2e-31 140.2 261 38.7
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 3.2e-31 140.2 259 39.4
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 7.2e-31 139.0 255 38.8
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 2.1e-30 137.5 413 31.5
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 2.7e-30 137.1 225 37.3
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 7.9e-30 135.6 253 37.9
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.3e-29 134.8 219 37.4
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.8e-29 134.4 207 41.1
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 6.7e-29 132.5 260 36.9
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 8.7e-29 132.1 204 39.2
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 1.5e-28 131.3 263 41.1
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.6e-27 127.9 247 36.4
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 2.2e-27 127.5 229 43.7
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 6.3e-27 125.9 414 32.1
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-26 125.2 257 35.4
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.4e-26 124.0 235 35.7
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 4.1e-26 123.2 152 53.9
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 6.9e-26 122.5 213 37.1
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.5e-25 121.3 213 38.5
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.0e-25 120.9 217 37.8
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.9e-25 119.4 268 33.2
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.3e-24 118.2 356 32.3
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.1e-23 115.2 219 37.0
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 9.4e-23 112.1 256 34.0
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.6e-22 111.3 358 30.2
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 7.4e-20 102.4 257 33.5
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.3e-19 99.4 162 37.0
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 6.3e-19 99.4 162 37.0
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.4e-18 97.4 141 40.4
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 3.1e-18 97.1 98 45.9
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.1e-18 95.5 198 34.8
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.6e-17 94.0 258 28.7
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.7e-14 84.0 127 41.7
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.4e-13 81.6 129 34.9
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.3e-11 75.1 47 66.0
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.4e-10 70.9 149 37.6
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 7.7e-09 65.9 50 58.0
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 1.9e-07 61.2 134 38.1
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 2.7e-06 57.4 115 35.7
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.6e-06 57.0 199 29.1
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 4.7e-06 56.6 173 31.2


User provided reference genes

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