Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 1.3e-199 699.5 363 100.0
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 2.1e-91 340.1 363 55.9
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 5.1e-90 335.5 363 55.6
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 1.9e-89 333.6 459 48.8
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 1.9e-84 317.0 363 52.3
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.5e-81 306.6 362 52.8
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 7.4e-81 305.1 363 51.0
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.7e-80 302.8 358 52.5
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 4.6e-75 285.8 361 50.1
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 1.3e-72 277.7 359 47.9
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 3.7e-72 276.2 362 48.1
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 2.4e-71 273.5 363 46.3
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 2.6e-70 270.0 362 48.6
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 7.7e-70 268.5 358 46.4
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 1.2e-67 261.2 362 47.2
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.1e-67 260.4 359 44.8
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 4.6e-67 259.2 361 45.7
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 1.4e-66 257.7 358 45.5
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.3e-66 256.9 360 45.6
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 2.3e-66 256.9 358 44.7
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 3.0e-66 256.5 360 45.6
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 3.9e-66 256.1 358 46.4
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 5.1e-66 255.8 358 43.6
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 6.7e-66 255.4 359 45.1
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.1e-65 254.6 358 44.4
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.1e-65 254.6 358 43.6
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 2.5e-65 253.4 358 46.1
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 3.3e-65 253.1 363 45.2
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 3.3e-65 253.1 358 43.3
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 5.7e-65 252.3 360 43.3
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 2.2e-64 250.4 360 45.0
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 3.7e-64 249.6 360 43.3
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 3.7e-64 249.6 361 43.5
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 3.7e-64 249.6 357 43.7
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 3.7e-64 249.6 358 42.7
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 4.8e-64 249.2 357 43.7
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 8.2e-64 248.4 359 44.8
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 8.2e-64 248.4 360 44.7
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.4e-63 247.7 358 45.5
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 1.8e-63 247.3 375 43.5
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.8e-63 247.3 360 44.2
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 2.4e-63 246.9 358 43.6
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 5.3e-63 245.7 360 44.7
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 5.3e-63 245.7 360 43.6
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 6.9e-63 245.4 361 42.9
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 2.0e-62 243.8 363 43.5
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.0e-62 243.8 360 43.6
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 2.6e-62 243.4 358 43.9
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.0e-61 241.5 359 42.3
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 1.0e-61 241.5 360 43.9
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.7e-61 240.7 359 42.3
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.9e-61 240.0 359 42.3
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 3.8e-61 239.6 360 42.8
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 5.0e-61 239.2 370 43.2
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 6.5e-61 238.8 360 42.8
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 6.5e-61 238.8 360 43.1
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 1.1e-60 238.0 363 42.7
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.1e-60 238.0 361 43.5
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 9.4e-60 235.0 360 42.5
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 3.6e-59 233.0 357 41.2
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 1.0e-58 231.5 357 42.6
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 1.4e-58 231.1 361 41.3
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.3e-58 230.3 359 42.6
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 3.9e-58 229.6 359 40.9
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.1e-58 229.2 361 41.6
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 6.7e-58 228.8 359 42.1
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 6.7e-58 228.8 351 42.7
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.7e-58 228.8 361 41.8
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.7e-58 228.8 360 41.7
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.7e-58 228.8 360 41.7
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 6.7e-58 228.8 315 45.1
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 8.8e-58 228.4 363 41.6
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 2.0e-57 227.3 315 44.8
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 2.0e-57 227.3 360 41.4
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 9.7e-57 224.9 378 41.3
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 1.3e-56 224.6 358 40.5
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 1.7e-56 224.2 358 41.9
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 2.8e-56 223.4 359 40.4
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 4.8e-56 222.6 301 44.5
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 4.8e-56 222.6 357 39.5
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 8.2e-56 221.9 359 40.4
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 3.1e-55 219.9 361 39.6
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 3.1e-55 219.9 361 41.3
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 9.1e-55 218.4 358 40.8
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 9.1e-55 218.4 362 39.8
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 1.2e-54 218.0 359 39.8
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 1.7e-53 214.2 345 42.9
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 2.9e-53 213.4 360 39.4
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 3.8e-53 213.0 374 39.8
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.8e-53 213.0 351 40.5
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 5.0e-53 212.6 361 38.5
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 5.0e-53 212.6 358 40.5
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 5.0e-53 212.6 405 39.8
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 8.5e-53 211.8 358 40.5
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 1.4e-52 211.1 360 39.4
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 2.5e-52 210.3 360 40.0
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 2.5e-52 210.3 360 40.0
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.5e-52 210.3 359 41.8
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 4.2e-52 209.5 359 39.0
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 5.5e-52 209.1 358 38.5
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 7.2e-52 208.8 358 38.5
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.6e-51 207.6 356 40.2
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 2.7e-51 206.8 359 39.0
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 3.6e-51 206.5 378 39.2
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 8.0e-51 205.3 359 36.8
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.0e-50 204.9 359 38.4
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 1.4e-50 204.5 359 38.2
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 2.3e-50 203.8 359 39.3
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 3.9e-50 203.0 359 39.0
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 8.8e-50 201.8 390 37.7
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.1e-49 201.4 359 37.9
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 1.5e-49 201.1 359 37.6
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 2.0e-49 200.7 359 37.3
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 2.0e-49 200.7 359 37.6
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 3.3e-49 199.9 358 36.9
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 4.4e-49 199.5 359 37.3
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 5.7e-49 199.1 359 37.6
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 7.4e-49 198.7 359 37.3
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 1.3e-48 198.0 360 36.9
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 1.3e-48 198.0 360 36.9
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 1.3e-48 198.0 359 37.3
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 2.8e-48 196.8 358 36.9
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 2.8e-48 196.8 358 36.0
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 3.7e-48 196.4 359 37.0
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 3.7e-48 196.4 359 37.0
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 3.7e-48 196.4 360 39.4
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 1.1e-47 194.9 359 36.5
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 1.1e-47 194.9 359 36.5
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 1.4e-47 194.5 359 37.6
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 1.4e-47 194.5 371 38.5
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.3e-47 192.6 363 37.7
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.6e-46 191.0 371 38.0
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.6e-46 190.3 370 37.6
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 4.5e-46 189.5 358 35.8
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 5.9e-46 189.1 379 35.9
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.3e-45 188.0 368 35.9
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 2.9e-45 186.8 359 35.4
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 2.9e-45 186.8 364 37.1
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 7.2e-44 182.2 358 38.0
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 9.4e-44 181.8 325 39.7
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 2.1e-43 180.6 314 36.9
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 3.3e-41 173.3 315 39.0
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 1.5e-36 157.9 162 53.1
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.5e-36 157.9 357 34.2
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.8e-34 151.0 357 32.8
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 1.8e-34 151.0 304 37.2
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 5.2e-34 149.4 142 57.0
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 1.2e-33 148.3 159 51.6
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 6.3e-32 142.5 125 60.0
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 6.3e-32 142.5 309 35.3
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.1e-31 141.7 230 41.3
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.6e-30 137.9 345 30.1
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.0e-30 137.5 345 29.9
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 1.0e-29 135.2 356 30.1
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 1.3e-24 118.2 73 78.1
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 1.3e-24 118.2 299 29.1
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 4.9e-24 116.3 70 77.1
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 3.5e-22 110.2 252 32.1
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 6.6e-21 105.9 69 72.5
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 5.6e-20 102.8 196 35.7
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.3e-18 97.4 69 71.0
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.0e-17 94.4 82 58.5
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 2.6e-17 94.0 266 31.6
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 1.4e-15 88.2 103 48.5
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 1.4e-15 88.2 295 24.7
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 2.4e-15 87.4 107 43.9
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 3.5e-14 83.6 142 34.5
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.6e-14 83.2 70 58.6
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.3e-13 81.6 70 55.7
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 6.6e-13 79.3 70 55.7
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.1e-12 78.6 55 72.7
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.1e-12 78.6 72 54.2
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 1.2e-11 75.1 128 31.2
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 8.9e-10 68.9 180 29.4
BolC4t26421H Brassica oleracea HOM05D003972 ORTHO05D004609 6.0e-06 56.2 54 50.0
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 6.0e-06 56.2 145 29.0


User provided reference genes

Program Settings