Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 2.1e-62 242.3 129 100.0
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 1.5e-57 226.1 129 92.2
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 2.5e-55 218.8 129 87.6
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 5.5e-55 217.6 129 89.1
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 9.4e-55 216.9 129 86.8
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.2e-54 216.5 129 87.6
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.7e-54 215.3 129 86.8
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 1.8e-53 212.6 127 85.0
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 2.3e-53 212.2 129 86.0
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 3.9e-53 211.5 122 88.5
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 5.2e-53 211.1 129 86.0
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 8.8e-53 210.3 127 83.5
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 2.0e-52 209.1 128 83.6
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 2.6e-52 208.8 128 85.9
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 3.3e-52 208.4 129 83.7
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 3.3e-52 208.4 129 83.7
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 5.7e-52 207.6 127 83.5
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 5.7e-52 207.6 129 84.5
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 7.4e-52 207.2 129 84.5
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 7.4e-52 207.2 129 82.2
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 7.4e-52 207.2 129 85.3
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 7.4e-52 207.2 129 83.7
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 1.3e-51 206.5 129 82.9
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 1.3e-51 206.5 129 83.7
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 1.7e-51 206.1 129 82.9
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 1.7e-51 206.1 127 82.7
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.7e-51 206.1 127 82.7
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 2.2e-51 205.7 129 83.7
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 2.2e-51 205.7 129 82.2
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 3.7e-51 204.9 125 83.2
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 3.7e-51 204.9 129 82.9
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 4.8e-51 204.5 129 82.9
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 8.2e-51 203.8 129 82.9
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 8.2e-51 203.8 129 80.6
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.1e-50 203.4 129 81.4
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 1.1e-50 203.4 125 82.4
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 1.4e-50 203.0 129 81.4
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 1.4e-50 203.0 129 82.2
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.8e-50 202.6 129 81.4
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 1.8e-50 202.6 129 81.4
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 1.8e-50 202.6 129 81.4
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 1.8e-50 202.6 129 82.2
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 1.8e-50 202.6 128 82.0
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 2.4e-50 202.2 129 82.2
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 2.4e-50 202.2 129 81.4
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 2.4e-50 202.2 122 82.8
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 3.1e-50 201.8 129 79.8
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.1e-50 201.8 129 80.6
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 3.1e-50 201.8 129 80.6
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 4.1e-50 201.4 129 79.8
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 4.1e-50 201.4 129 79.8
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 5.3e-50 201.1 129 82.9
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 5.3e-50 201.1 129 82.2
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 7.0e-50 200.7 129 81.4
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 9.1e-50 200.3 129 79.8
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 9.1e-50 200.3 129 80.6
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 1.2e-49 199.9 129 81.4
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 1.2e-49 199.9 129 81.4
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.6e-49 199.5 129 79.1
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.6e-49 199.5 129 79.1
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.6e-49 199.5 129 80.6
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.0e-49 199.1 129 79.1
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 5.9e-49 197.6 129 78.3
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 5.9e-49 197.6 129 80.6
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 7.7e-49 197.2 122 82.0
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 1.0e-48 196.8 129 79.8
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 1.3e-48 196.4 129 79.8
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 1.7e-48 196.1 129 79.8
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.7e-48 196.1 129 81.4
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 2.2e-48 195.7 129 77.5
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 2.2e-48 195.7 129 79.8
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 3.8e-48 194.9 129 79.8
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 8.5e-48 193.7 122 79.5
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 1.5e-47 193.0 129 77.5
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 1.9e-47 192.6 129 76.0
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 9.4e-47 190.3 128 76.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 9.4e-47 190.3 154 71.4
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 2.1e-46 189.1 131 75.6
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 2.1e-46 189.1 129 76.0
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 2.7e-46 188.7 130 76.9
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 2.7e-46 188.7 130 76.9
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 2.7e-46 188.7 129 76.0
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 4.7e-46 188.0 128 75.0
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 4.7e-46 188.0 129 73.6
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 4.7e-46 188.0 123 77.2
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 6.1e-46 187.6 129 76.7
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 6.1e-46 187.6 129 79.1
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 8.0e-46 187.2 129 76.0
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 8.0e-46 187.2 129 73.6
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 1.0e-45 186.8 127 74.8
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 1.8e-45 186.0 118 81.4
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 1.8e-45 186.0 131 74.0
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 2.3e-45 185.7 129 72.9
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 2.3e-45 185.7 131 74.8
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 2.0e-44 182.6 127 71.7
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.6e-44 182.2 127 71.7
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 4.4e-44 181.4 131 71.0
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 4.4e-44 181.4 131 70.2
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 4.4e-44 181.4 131 71.0
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 7.5e-44 180.6 129 74.4
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 9.7e-44 180.3 129 76.0
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 9.7e-44 180.3 129 76.0
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 1.3e-43 179.9 129 72.9
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 1.7e-43 179.5 129 71.3
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 3.7e-43 178.3 118 75.4
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 8.2e-43 177.2 118 74.6
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 5.3e-42 174.5 129 69.8
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.7e-40 169.5 129 68.2
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 2.2e-40 169.1 129 70.5
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 2.9e-40 168.7 129 72.9
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 8.5e-40 167.2 152 59.2
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.2e-38 163.3 129 68.2
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 4.7e-38 161.4 129 66.7
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 1.8e-37 159.5 129 65.1
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 1.5e-36 156.4 129 64.3
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 8.6e-32 140.6 88 83.0
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.5e-31 139.8 122 58.2
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 4.2e-31 138.3 129 58.9
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 9.5e-31 137.1 87 81.6
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 8.0e-30 134.0 129 56.6
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 1.4e-29 133.3 87 79.3
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 1.5e-28 129.8 85 75.3
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 4.9e-27 124.8 129 53.5
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 1.4e-26 123.2 130 53.8
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 5.4e-26 121.3 87 70.1
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 8.0e-22 107.5 121 47.1
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.6e-17 93.2 61 77.0
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 7.8e-17 90.9 121 43.0
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 1.3e-16 90.1 121 43.0
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 9.8e-12 73.9 46 78.3
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 9.2e-10 67.4 57 66.7
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 3.5e-09 65.5 35 85.7
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 4.6e-09 65.1 31 96.8
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 6.0e-09 64.7 89 42.7
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.3e-08 63.5 40 75.0


User provided reference genes

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