Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 0.0e+00 1675.2 857 100.0
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 1.6e-174 617.5 894 45.7
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 2.0e-169 600.5 822 47.3
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 4.3e-164 582.8 883 44.7
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 5.8e-161 572.4 848 44.7
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 2.6e-137 493.8 903 39.8
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 8.8e-117 425.6 766 39.7
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 4.9e-107 393.3 822 36.3
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 1.4e-106 391.7 801 36.6
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 7.0e-106 389.4 892 35.1
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 1.0e-104 385.6 820 35.6
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 1.6e-102 378.3 838 35.6
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 8.0e-102 375.9 889 34.4
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 1.5e-100 371.7 530 43.2
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 2.9e-99 367.5 856 34.2
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 2.9e-99 367.5 801 35.1
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 9.2e-98 362.5 511 43.1
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 1.4e-93 348.6 854 34.4
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 5.2e-93 346.7 838 34.4
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 2.6e-92 344.4 841 33.3
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 4.9e-91 340.1 882 32.5
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 4.9e-91 340.1 804 34.5
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 3.2e-90 337.4 805 34.2
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 4.1e-90 337.0 845 34.4
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.1e-90 336.3 835 34.3
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 2.1e-89 334.7 845 34.2
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 6.0e-89 333.2 872 33.5
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 7.8e-89 332.8 850 32.4
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 6.6e-88 329.7 762 32.8
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 8.6e-88 329.3 767 34.0
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 4.3e-87 327.0 868 33.6
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 4.7e-86 323.6 740 34.3
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 3.4e-84 317.4 842 31.8
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 3.4e-84 317.4 799 33.0
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 7.6e-84 316.2 799 33.2
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 9.9e-84 315.8 800 33.9
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 3.7e-83 313.9 831 32.7
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 6.4e-83 313.2 830 33.4
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 2.7e-81 307.8 788 33.5
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 3.5e-81 307.4 829 33.1
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 6.0e-81 306.6 646 37.6
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 8.6e-80 302.8 839 33.3
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 1.1e-79 302.4 958 31.0
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 1.9e-79 301.6 840 31.8
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.5e-79 301.2 538 39.0
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 3.3e-79 300.8 769 33.0
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 1.2e-78 298.9 790 33.5
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 2.4e-77 294.7 835 31.9
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 3.1e-77 294.3 523 39.0
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 5.2e-77 293.5 786 31.8
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 2.0e-76 291.6 790 32.5
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 2.6e-76 291.2 627 34.8
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 1.3e-75 288.9 829 31.7
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 5.4e-74 283.5 814 33.3
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 9.3e-74 282.7 840 30.4
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 9.3e-74 282.7 826 32.0
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 1.2e-73 282.3 546 36.4
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 5.1e-72 276.9 849 30.4
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 1.1e-71 275.8 699 34.0
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 5.6e-71 273.5 284 51.4
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 5.6e-71 273.5 862 31.1
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 8.1e-70 269.6 830 32.7
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 6.9e-69 266.5 808 32.3
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 1.5e-68 265.4 790 30.9
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 2.0e-68 265.0 797 31.9
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 2.0e-68 265.0 598 35.6
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 9.9e-68 262.7 827 30.8
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 1.3e-67 262.3 844 30.5
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 2.9e-67 261.2 805 30.7
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 1.4e-66 258.8 599 33.4
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 2.4e-66 258.1 805 30.4
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 7.1e-66 256.5 501 35.5
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 2.1e-65 255.0 857 30.3
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 2.7e-65 254.6 602 32.9
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 7.4e-63 246.5 440 37.3
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 9.6e-63 246.1 855 29.2
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 3.1e-61 241.1 439 36.7
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 9.0e-61 239.6 864 29.6
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.5e-60 238.8 827 28.7
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 2.6e-60 238.0 553 36.0
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 2.9e-59 234.6 513 35.9
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 1.9e-58 231.9 819 29.5
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 5.6e-55 220.3 773 30.5
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 9.6e-55 219.5 825 28.7
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 1.3e-54 219.2 823 28.4
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 1.3e-54 219.2 823 28.4
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 2.4e-53 214.9 786 29.1
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 2.4e-53 214.9 764 29.6
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 3.1e-53 214.5 559 31.8
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 1.2e-52 212.6 857 28.4
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 1.7e-51 208.8 746 29.6
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 1.1e-50 206.1 850 28.9
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 1.4e-50 205.7 553 33.8
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 1.9e-50 205.3 837 28.2
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 6.0e-49 200.3 582 31.3
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 7.6e-44 183.3 614 32.4
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 7.6e-44 183.3 509 31.8
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 5.0e-43 180.6 681 28.6
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 8.4e-43 179.9 586 30.2
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 5.5e-42 177.2 744 27.0
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 5.5e-42 177.2 593 30.4
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 1.2e-41 176.0 463 33.3
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 1.6e-41 175.6 394 32.0
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 1.1e-37 162.9 587 30.3
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 3.4e-36 157.9 368 35.9
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 1.9e-34 152.1 350 32.6
SGA_v2.0_scaffold161G37810 Striga asiatica HOM05D001393 ORTHO05D007477 7.9e-33 146.7 167 55.1
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.4e-29 135.2 152 46.7
SGA_v2.0_scaffold161G37811 Striga asiatica HOM05D001393 ORTHO05D007477 8.0e-17 93.6 110 49.1
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 4.4e-15 87.8 134 44.8
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 7.0e-13 80.5 184 36.4
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 1.1e-10 73.2 411 22.6
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 2.1e-09 68.9 450 23.8
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 2.1e-09 68.9 450 23.8
Pp3c5_15230 Physcomitrium patens HOM05D001393 ORTHO05D007477 7.5e-07 60.5 215 28.8
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 1.3e-06 59.7 168 30.4


User provided reference genes

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