Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.1e-247 858.6 439 100.0
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 8.7e-153 544.3 327 85.0
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 9.4e-147 524.2 326 83.1
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.0e-144 516.5 328 82.3
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 4.3e-144 515.4 327 84.1
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 3.1e-142 509.2 319 84.3
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 2.6e-141 506.1 322 80.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 3.4e-141 505.8 318 83.6
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 2.5e-139 499.6 326 80.4
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 4.2e-139 498.8 327 79.8
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 5.5e-139 498.4 324 80.2
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.2e-138 497.3 321 81.6
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 6.1e-138 495.0 317 79.2
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 7.9e-138 494.6 326 79.8
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.0e-137 494.2 314 82.8
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.4e-137 493.8 318 80.8
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 3.9e-137 492.3 318 79.6
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 6.7e-137 491.5 325 79.1
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 6.7e-137 491.5 326 79.1
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 6.7e-137 491.5 326 79.1
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 6.7e-137 491.5 324 79.3
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.5e-136 490.3 305 84.3
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 2.0e-136 490.0 318 79.9
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 5.7e-136 488.4 318 79.2
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.8e-135 485.3 322 78.0
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 4.8e-135 485.3 323 77.4
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.4e-134 483.0 322 77.0
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.1e-134 482.3 322 77.6
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 5.3e-134 481.9 320 77.8
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 7.0e-134 481.5 321 76.9
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.1e-134 481.1 322 77.0
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.2e-133 480.7 322 78.3
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.2e-133 480.7 318 78.3
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.2e-133 480.7 318 78.3
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.2e-133 480.7 322 76.7
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.2e-133 480.7 322 78.6
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.5e-133 480.3 322 77.0
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.6e-133 479.6 317 79.2
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.9e-132 476.1 321 78.2
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.8e-132 475.7 318 77.4
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 5.0e-132 475.3 318 78.3
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 6.5e-132 474.9 320 77.2
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 6.5e-132 474.9 328 74.7
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 8.5e-132 474.6 326 76.4
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.1e-131 474.2 322 76.7
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 1.1e-131 474.2 321 75.4
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.1e-131 474.2 331 75.5
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.5e-131 473.8 322 77.3
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.5e-131 473.8 328 74.1
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 2.5e-131 473.0 320 76.9
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 3.2e-131 472.6 317 77.0
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 5.5e-131 471.9 326 76.7
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 5.5e-131 471.9 324 75.9
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 9.4e-131 471.1 323 77.1
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.2e-130 470.7 318 77.4
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.2e-130 470.7 322 77.3
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.6e-130 470.3 317 76.7
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.6e-130 470.3 325 77.2
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 2.1e-130 469.9 317 76.7
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.7e-130 469.5 322 74.8
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.7e-130 469.5 323 75.9
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 2.7e-130 469.5 325 76.9
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 3.6e-130 469.2 326 77.0
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 4.7e-130 468.8 318 77.4
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 6.1e-130 468.4 328 75.3
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 6.1e-130 468.4 317 76.3
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 8.0e-130 468.0 316 78.2
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.0e-129 467.6 293 81.9
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.0e-129 467.6 317 75.7
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.0e-129 467.6 324 75.9
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.4e-129 467.2 291 82.8
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.8e-129 466.8 315 79.0
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.3e-129 466.5 317 76.7
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.9e-129 465.7 318 77.7
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 5.2e-129 465.3 329 74.8
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 6.7e-129 464.9 332 74.7
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 8.8e-129 464.5 317 75.7
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 8.8e-129 464.5 330 74.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 8.8e-129 464.5 329 73.6
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 8.8e-129 464.5 319 78.7
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.1e-128 464.2 321 76.3
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-128 464.2 321 76.9
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.1e-128 464.2 321 76.0
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.1e-128 464.2 294 82.0
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 2.6e-128 463.0 322 75.5
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 2.6e-128 463.0 322 76.4
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 4.4e-128 462.2 329 74.2
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 7.4e-128 461.5 292 81.2
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 7.4e-128 461.5 328 73.5
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 7.4e-128 461.5 292 81.2
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 7.4e-128 461.5 292 81.2
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 9.7e-128 461.1 329 73.3
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.7e-127 460.3 322 75.5
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.8e-127 459.5 329 74.2
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 4.8e-127 458.8 331 74.3
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 8.2e-127 458.0 331 74.0
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 2.4e-126 456.4 329 73.3
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 7.0e-126 454.9 317 73.5
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 7.0e-126 454.9 325 73.2
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.6e-125 453.8 298 79.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 1.7e-124 450.3 319 75.9
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.7e-124 450.3 325 75.1
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.8e-124 449.1 327 74.0
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 3.8e-124 449.1 325 72.3
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 7.2e-123 444.9 325 70.2
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.2e-122 444.1 320 72.2
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 1.2e-122 444.1 319 74.9
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 1.2e-122 444.1 358 66.8
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.6e-122 443.7 326 73.6
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.6e-122 443.7 317 72.6
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 3.6e-122 442.6 319 74.9
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.0e-121 439.5 325 74.5
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.2e-120 437.6 240 90.4
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 4.4e-120 435.6 320 69.4
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 4.8e-119 432.2 425 58.4
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 6.3e-119 431.8 319 70.8
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.1e-118 431.0 240 90.4
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.2e-117 427.6 290 75.5
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.2e-117 427.6 427 56.7
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.9e-116 422.9 320 70.3
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 2.9e-116 422.9 324 68.2
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 3.2e-115 419.5 325 68.3
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 2.1e-114 416.8 252 84.9
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 6.3e-103 378.6 253 78.3
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.0e-100 371.3 247 75.3
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 2.0e-96 357.1 247 72.1
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 7.0e-94 348.6 230 77.8
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 7.0e-94 348.6 211 82.9
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.4e-89 334.3 243 67.1
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 6.8e-89 332.0 274 60.9
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 8.9e-89 331.6 201 82.1
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.0e-80 303.9 204 78.9
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.1e-73 281.6 162 90.1
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 3.0e-68 263.5 160 88.1
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.5e-67 260.4 328 52.1
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 5.8e-64 249.2 239 54.4
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 7.9e-61 238.8 241 47.7
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 4.8e-50 203.0 112 88.4
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 7.9e-45 185.7 261 42.5
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 2.8e-42 177.2 130 70.0
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 8.4e-39 165.6 100 79.0
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.0e-31 142.1 137 59.9
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.9e-28 130.2 79 81.0
SGA_v2.0_scaffold179G39591 Striga asiatica HOM05D048265 ORTHO05D405812 6.9e-25 119.4 93 69.9
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 2.1e-21 107.8 103 56.3
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 2.0e-19 101.3 101 56.4
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 9.7e-19 99.0 50 90.0
SGA_v2.0_scaffold179G39596 Striga asiatica HOM05D048265 ORTHO05D403203 3.7e-18 97.1 65 75.4
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.4e-17 95.1 52 90.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.4e-17 95.1 52 90.4
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.8e-17 94.7 63 68.3
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 4.2e-14 83.6 65 69.2
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.7e-13 80.9 129 41.9
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 1.7e-10 71.6 57 63.2
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 9.1e-09 65.9 57 54.4
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 1.2e-08 65.5 94 44.7
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 4.5e-08 63.5 75 48.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 4.5e-08 63.5 75 48.0
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 1.5e-06 58.5 51 68.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.5e-06 57.8 241 26.6


User provided reference genes

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