Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 2.6e-210 735.3 435 100.0
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 6.0e-154 548.1 438 75.3
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 2.4e-150 536.2 438 71.2
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 4.2e-131 472.2 453 66.2
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 6.7e-129 464.9 334 71.3
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 1.4e-126 457.2 340 70.9
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.8e-126 456.8 329 70.8
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 3.1e-126 456.1 342 69.6
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 5.3e-126 455.3 329 71.1
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.6e-125 453.0 326 72.1
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 1.3e-124 450.7 332 69.3
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.7e-124 450.3 342 69.6
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.5e-124 448.4 335 69.6
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 6.5e-124 448.4 330 72.1
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.9e-123 446.8 340 69.7
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 3.2e-123 446.0 326 71.2
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 5.5e-123 445.3 348 69.0
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 9.3e-123 444.5 321 72.0
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 6.1e-122 441.8 352 67.0
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 7.9e-122 441.4 360 67.2
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 7.9e-122 441.4 327 70.3
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 1.0e-121 441.0 334 68.3
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 5.1e-121 438.7 328 69.8
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 6.7e-121 438.3 330 70.3
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.9e-120 436.8 318 71.1
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 3.3e-120 436.0 322 69.9
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 9.7e-120 434.5 335 70.1
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 1.3e-119 434.1 331 69.5
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.3e-119 434.1 338 68.0
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 2.8e-119 433.0 341 68.0
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 8.2e-119 431.4 329 69.9
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 5.3e-118 428.7 331 69.2
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 4.5e-117 425.6 320 69.4
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 4.5e-117 425.6 328 67.7
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 7.7e-117 424.9 334 68.0
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.7e-116 423.7 335 69.0
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 1.7e-116 423.7 335 68.7
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 1.7e-116 423.7 335 66.9
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 2.2e-116 423.3 324 67.9
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 2.2e-116 423.3 346 65.6
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 2.9e-116 422.9 337 68.2
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 6.5e-116 421.8 343 66.8
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 1.1e-115 421.0 332 68.1
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 2.5e-115 419.9 336 65.8
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 3.2e-115 419.5 369 61.2
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 5.5e-115 418.7 335 66.3
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 5.5e-115 418.7 328 69.2
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.6e-114 417.2 330 67.6
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 1.6e-114 417.2 347 64.6
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 4.6e-114 415.6 345 65.8
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.8e-113 413.7 331 67.1
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 2.3e-113 413.3 330 65.2
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 3.9e-113 412.5 348 64.4
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 6.7e-113 411.8 386 60.1
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 8.8e-113 411.4 337 65.0
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.1e-112 411.0 331 65.6
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 1.5e-112 410.6 329 66.3
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 3.3e-112 409.5 332 66.6
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 5.7e-112 408.7 315 68.3
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.3e-111 407.5 325 66.2
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 2.8e-111 406.4 337 65.0
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 6.3e-111 405.2 327 65.4
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 1.4e-110 404.1 326 65.6
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 1.4e-110 404.1 330 65.2
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.8e-110 403.7 329 66.0
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 2.4e-110 403.3 290 71.7
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 4.1e-110 402.5 312 69.9
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 6.9e-110 401.7 323 65.0
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 6.9e-110 401.7 309 69.9
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 6.9e-110 401.7 309 70.2
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.2e-109 401.0 323 65.0
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.2e-109 401.0 343 63.6
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 1.5e-109 400.6 226 93.4
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.0e-109 400.2 343 63.6
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 3.4e-109 399.4 356 62.4
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 4.5e-109 399.1 334 62.6
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 5.9e-109 398.7 323 64.7
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 5.9e-109 398.7 323 64.7
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 7.7e-109 398.3 331 63.4
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 1.0e-108 397.9 327 64.2
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.0e-108 397.9 286 72.4
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 1.7e-108 397.1 337 63.8
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 1.7e-108 397.1 344 63.4
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 2.9e-108 396.4 330 64.2
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 5.0e-108 395.6 334 64.4
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 8.5e-108 394.8 336 62.8
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 8.5e-108 394.8 354 61.9
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.5e-107 393.3 286 72.7
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.5e-107 392.1 331 63.7
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 9.4e-107 391.3 361 60.7
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 7.9e-106 388.3 326 63.8
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 7.9e-106 388.3 325 64.3
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 1.4e-105 387.5 317 63.4
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 3.0e-105 386.3 335 60.9
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 4.4e-104 382.5 313 63.9
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 9.7e-104 381.3 302 65.6
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 4.8e-103 379.0 336 58.9
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 9.1e-102 374.8 346 59.8
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.6e-101 373.2 304 68.1
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 4.5e-101 372.5 294 66.0
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 5.9e-101 372.1 340 60.9
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 1.6e-98 364.0 317 62.8
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.1e-94 349.4 444 48.2
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 1.2e-93 347.8 334 58.1
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 4.2e-91 339.3 298 59.4
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 4.7e-90 335.9 361 55.4
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 2.3e-89 333.6 312 57.1
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 3.0e-89 333.2 298 58.1
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 4.5e-85 319.3 346 52.0
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 3.8e-84 316.2 305 57.0
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.3e-81 307.0 314 56.4
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 8.8e-81 305.1 288 61.5
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 8.6e-76 288.5 227 68.3
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 2.0e-64 250.8 334 43.4
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.5e-59 234.6 333 42.9
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 1.6e-58 231.1 215 60.0
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 1.7e-52 211.1 312 45.2
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 6.2e-50 202.6 139 75.5
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 7.3e-43 179.1 158 62.0
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.4e-40 170.2 159 61.0
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.9e-38 164.5 381 32.0
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 5.4e-38 162.9 116 68.1
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 7.1e-38 162.5 275 38.2
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.3e-38 162.2 156 57.1
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 1.0e-36 158.7 212 50.5
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 1.3e-36 158.3 112 74.1
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 1.3e-36 158.3 155 56.8
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 8.7e-36 155.6 176 53.4
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 1.8e-33 147.9 350 31.4
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 4.0e-25 120.2 98 61.2
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 9.9e-24 115.5 70 81.4
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 1.7e-23 114.8 168 42.9
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 1.0e-20 105.5 99 55.6
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 3.9e-20 103.6 74 75.7
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.1e-19 102.1 192 36.5
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.1e-19 102.1 177 44.1
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.9e-19 101.3 65 80.0
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 3.3e-19 100.5 84 60.7
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 5.6e-19 99.8 81 63.0
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 9.6e-19 99.0 68 75.0
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 4.8e-18 96.7 61 75.4
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 1.8e-17 94.7 117 48.7
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 3.1e-17 94.0 62 75.8
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 4.0e-17 93.6 332 26.8
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 2.0e-16 91.3 190 35.8
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 3.4e-16 90.5 135 45.9
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.7e-15 88.2 66 72.7
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.4e-14 85.1 60 71.7
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 4.6e-13 80.1 110 48.2
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.7e-12 76.3 89 53.9
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 5.7e-11 73.2 328 25.9
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 1.4e-09 68.6 118 33.9
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 7.2e-06 56.2 33 81.8
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 9.3e-06 55.8 60 53.3


User provided reference genes

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