Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 8.0e-58 226.9 114 100.0
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 5.8e-48 194.1 112 83.0
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 9.5e-43 176.8 109 79.8
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.6e-42 176.0 112 77.7
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 6.2e-42 174.1 111 78.4
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.4e-38 162.2 112 72.3
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.4e-38 161.0 112 72.3
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 6.0e-37 157.5 112 70.5
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 5.1e-36 154.5 112 71.4
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 5.1e-36 154.5 112 71.4
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 6.6e-36 154.1 112 70.5
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 4.3e-35 151.4 113 71.7
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 5.6e-35 151.0 112 68.8
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 5.6e-35 151.0 98 73.5
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 9.5e-35 150.2 108 67.6
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.6e-34 149.4 112 67.0
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.8e-34 148.7 140 59.3
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 4.7e-34 147.9 112 67.0
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 4.7e-34 147.9 112 68.8
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.1e-33 146.7 99 71.7
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.1e-33 146.7 99 71.7
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.1e-33 146.7 99 71.7
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.3e-33 145.6 116 65.5
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 3.1e-33 145.2 94 74.5
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 5.2e-33 144.4 107 68.2
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 6.8e-33 144.1 88 77.3
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 6.8e-33 144.1 112 63.4
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 6.8e-33 144.1 107 70.1
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 6.8e-33 144.1 100 73.0
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 8.9e-33 143.7 116 64.7
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 8.9e-33 143.7 92 76.1
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.2e-32 143.3 84 78.6
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.2e-32 143.3 84 78.6
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.2e-32 143.3 113 65.5
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.5e-32 142.9 90 71.1
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.5e-32 142.9 101 67.3
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 2.6e-32 142.1 91 72.5
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 3.4e-32 141.7 90 71.1
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 3.4e-32 141.7 100 71.0
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 3.4e-32 141.7 114 64.0
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 4.4e-32 141.4 109 68.8
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 5.8e-32 141.0 108 63.9
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 5.8e-32 141.0 101 67.3
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 9.9e-32 140.2 107 67.3
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 9.9e-32 140.2 90 70.0
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 9.9e-32 140.2 114 64.0
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 9.9e-32 140.2 89 70.8
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.3e-31 139.8 100 70.0
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.7e-31 139.4 108 66.7
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 1.7e-31 139.4 114 64.9
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.2e-31 139.0 91 72.5
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.2e-31 139.0 113 64.6
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 2.9e-31 138.7 112 64.3
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 2.9e-31 138.7 117 64.1
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 3.8e-31 138.3 97 69.1
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 6.4e-31 137.5 92 71.7
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 8.4e-31 137.1 88 70.5
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 8.4e-31 137.1 91 74.7
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.4e-30 136.3 100 67.0
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.4e-30 136.3 114 60.5
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.4e-30 136.3 96 66.7
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.9e-30 136.0 84 75.0
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.4e-30 135.6 88 70.5
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 2.4e-30 135.6 84 73.8
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.2e-30 135.2 100 66.0
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.2e-30 135.2 91 68.1
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.2e-30 135.2 91 68.1
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.1e-30 134.8 91 68.1
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 5.4e-30 134.4 91 68.1
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.4e-30 134.4 109 61.5
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 7.1e-30 134.0 84 76.2
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 7.1e-30 134.0 109 65.1
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 9.2e-30 133.7 111 59.5
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 9.2e-30 133.7 113 61.9
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 9.2e-30 133.7 114 59.6
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 9.2e-30 133.7 114 59.6
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.2e-29 133.3 101 61.4
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.6e-29 132.9 88 70.5
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.6e-29 132.9 100 63.0
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.1e-29 132.5 88 69.3
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.1e-29 132.5 109 60.6
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 2.7e-29 132.1 75 81.3
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 4.6e-29 131.3 98 66.3
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.6e-29 131.3 117 58.1
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.0e-29 131.0 97 64.9
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 6.0e-29 131.0 97 69.1
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 7.8e-29 130.6 101 61.4
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 7.8e-29 130.6 88 68.2
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.0e-28 130.2 111 56.8
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.0e-28 130.2 111 56.8
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.0e-28 130.2 111 56.8
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.0e-28 130.2 86 72.1
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.3e-28 129.8 111 56.8
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.3e-28 129.8 115 61.7
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.7e-28 129.4 110 56.4
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.3e-28 129.0 102 61.8
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 2.3e-28 129.0 111 56.8
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 2.3e-28 129.0 110 59.1
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.9e-28 128.3 77 74.0
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 5.1e-28 127.9 77 75.3
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 5.1e-28 127.9 109 56.9
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 8.6e-28 127.1 112 55.4
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.1e-27 126.7 111 55.9
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.5e-27 126.3 111 55.9
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.9e-27 125.9 111 56.8
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.9e-27 125.9 111 56.8
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.5e-27 125.6 111 55.9
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.5e-27 125.6 101 62.4
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 3.3e-27 125.2 96 61.5
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 3.3e-27 125.2 100 62.0
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.3e-27 125.2 77 71.4
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 4.3e-27 124.8 112 54.5
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.2e-26 123.2 84 70.2
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.6e-26 122.9 101 59.4
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 2.1e-26 122.5 105 61.0
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 2.8e-26 122.1 84 70.2
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.6e-26 121.7 158 46.8
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 3.6e-26 121.7 155 47.1
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 6.2e-26 120.9 100 58.0
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 8.1e-26 120.6 90 66.7
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.1e-25 120.2 89 66.3
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.4e-25 119.8 106 61.3
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.1e-25 118.6 210 36.7
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.2e-24 116.7 129 51.2
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 7.6e-24 114.0 71 73.2
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 9.9e-24 113.6 86 68.6
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 9.9e-24 113.6 87 59.8
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 9.9e-24 113.6 73 67.1
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.9e-22 109.4 73 65.8
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 1.9e-22 109.4 80 65.0
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.9e-22 109.4 74 70.3
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.4e-22 109.0 103 57.3
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 4.2e-22 108.2 92 58.7
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.6e-21 106.3 80 63.8
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-20 102.1 90 58.9
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-20 102.1 90 58.9
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.8e-18 95.5 80 63.8
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 3.1e-17 92.0 99 48.5
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 4.0e-17 91.7 65 64.6
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 5.3e-17 91.3 76 57.9
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 5.3e-17 91.3 76 57.9
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 5.3e-17 91.3 73 61.6
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.3e-17 91.3 81 56.8
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.0e-16 89.4 72 62.5
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 4.5e-16 88.2 94 53.2
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 4.5e-16 88.2 68 67.6
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 4.5e-16 88.2 51 78.4
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.7e-15 86.3 61 67.2
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.1e-14 83.6 68 51.5
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 4.2e-14 81.6 49 77.6
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 6.0e-13 77.8 83 51.8
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 7.9e-13 77.4 60 65.0
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 7.9e-13 77.4 83 50.6
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 5.6e-11 71.2 94 42.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.6e-10 69.7 80 53.8
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.6e-10 69.7 55 58.2
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 8.1e-10 67.4 69 50.7
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 4.0e-09 65.1 62 58.1
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 9.0e-09 63.9 65 46.2
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 9.0e-09 63.9 65 46.2
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 2.0e-08 62.8 71 46.5
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.6e-08 62.4 49 69.4


User provided reference genes

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