Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 4.3e-155 551.2 263 100.0
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 3.5e-133 478.4 275 83.3
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 3.1e-129 465.3 277 81.6
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 2.6e-128 462.2 277 81.2
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 2.0e-120 436.0 264 77.7
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 6.5e-119 431.0 267 76.4
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.4e-118 429.9 259 78.0
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.4e-118 429.9 275 74.5
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.9e-118 429.5 267 76.4
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 4.6e-117 424.9 263 76.0
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 6.0e-117 424.5 250 78.4
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 7.9e-117 424.1 273 74.0
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.3e-116 423.3 279 73.1
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.3e-116 422.5 271 74.2
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 6.7e-116 421.0 264 75.8
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 3.3e-115 418.7 280 72.9
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.6e-114 416.4 278 72.3
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.6e-114 416.4 278 72.7
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.6e-114 416.4 280 72.1
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.1e-114 416.0 273 73.3
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 2.8e-114 415.6 266 75.2
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.8e-114 415.6 267 74.2
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 3.7e-114 415.2 271 72.0
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 3.7e-114 415.2 273 72.5
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 4.8e-114 414.8 271 72.7
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 6.3e-114 414.5 278 72.3
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.4e-113 412.5 269 72.9
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 6.9e-113 411.0 269 72.9
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 6.9e-113 411.0 278 71.6
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 9.0e-113 410.6 267 72.3
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 1.5e-112 409.8 264 74.2
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 2.0e-112 409.5 261 73.9
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 2.0e-112 409.5 269 71.4
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.0e-112 409.5 263 74.9
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 2.6e-112 409.1 268 72.4
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 2.6e-112 409.1 266 71.8
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 3.4e-112 408.7 268 71.6
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 4.5e-112 408.3 267 72.3
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 4.5e-112 408.3 274 72.3
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 5.9e-112 407.9 269 72.9
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 5.9e-112 407.9 274 71.5
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 5.9e-112 407.9 270 73.3
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 7.6e-112 407.5 276 71.4
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 7.6e-112 407.5 264 73.1
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 7.6e-112 407.5 264 73.9
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.7e-111 406.4 276 71.0
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.7e-111 406.4 230 85.7
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 5.0e-111 404.8 268 70.5
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 6.5e-111 404.4 276 70.3
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 8.5e-111 404.1 270 71.1
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 8.5e-111 404.1 270 71.1
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 8.5e-111 404.1 268 72.0
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.9e-110 402.9 253 75.5
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 3.2e-110 402.1 262 71.8
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 3.2e-110 402.1 268 70.5
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 7.2e-110 401.0 266 71.8
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 1.2e-109 400.2 268 70.1
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.6e-109 399.8 257 72.0
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 7.9e-109 397.5 262 71.0
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 2.3e-108 396.0 292 67.8
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 8.7e-108 394.0 272 70.6
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 8.7e-108 394.0 283 69.3
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.1e-107 393.7 258 71.7
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.1e-107 393.7 258 71.7
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.1e-107 393.7 283 69.3
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.1e-107 393.7 261 72.0
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.1e-107 393.7 261 72.0
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.1e-107 393.7 264 72.0
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.9e-107 392.9 259 70.7
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 2.5e-107 392.5 267 71.5
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 5.7e-107 391.3 275 68.7
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 5.7e-107 391.3 257 71.6
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.7e-107 391.3 283 68.9
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 9.7e-107 390.6 276 69.9
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.3e-106 390.2 275 68.4
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 1.3e-106 390.2 275 68.4
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 1.6e-106 389.8 274 68.2
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 2.8e-106 389.0 276 68.8
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 4.1e-105 385.2 275 67.6
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 5.3e-105 384.8 271 68.3
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 5.3e-105 384.8 275 67.6
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 9.1e-105 384.0 266 69.9
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.0e-103 380.6 273 67.8
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 1.0e-103 380.6 262 68.3
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 1.7e-103 379.8 273 67.8
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 2.2e-103 379.4 270 68.5
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 2.2e-103 379.4 250 71.2
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 2.9e-103 379.0 273 67.4
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 3.8e-103 378.6 251 70.9
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.4e-102 376.7 281 66.2
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.4e-102 376.7 253 70.8
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.9e-102 376.3 263 67.7
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.9e-102 376.3 276 66.3
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.5e-102 375.9 287 64.1
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 2.7e-101 372.5 275 65.8
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 2.7e-101 372.5 280 67.1
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.0e-100 370.5 289 63.3
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.4e-100 370.2 260 68.5
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 8.8e-100 367.5 263 68.8
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.1e-99 367.1 249 71.1
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 1.1e-99 367.1 270 65.9
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.5e-99 366.7 246 69.5
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 4.4e-99 365.2 275 65.5
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.1e-97 358.6 238 73.1
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 4.1e-97 358.6 300 59.7
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 6.9e-97 357.8 213 78.9
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 4.5e-96 355.1 258 65.5
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 6.5e-95 351.3 235 69.4
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.4e-94 350.1 290 62.1
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 1.6e-93 346.7 235 68.1
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 2.7e-93 345.9 279 63.4
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 6.1e-93 344.7 240 68.3
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.4e-91 338.6 283 59.7
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 9.1e-89 330.9 228 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 2.9e-87 325.9 251 60.6
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 5.0e-87 325.1 241 63.9
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.9e-86 323.2 254 62.2
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.5e-86 322.8 246 59.3
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.5e-86 321.6 334 51.8
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.1e-85 319.7 222 64.9
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.0e-84 317.4 221 70.1
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 4.0e-84 315.5 228 63.2
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.7e-80 302.8 270 57.0
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 3.8e-79 298.9 196 71.4
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 7.5e-75 284.6 231 60.6
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 1.2e-72 277.3 219 57.5
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 5.9e-72 275.0 177 72.3
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 7.7e-72 274.6 184 72.3
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.7e-71 273.5 168 75.0
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.4e-65 253.1 202 57.9
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 8.0e-61 238.0 191 62.3
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.8e-60 236.9 167 70.1
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.7e-58 229.2 142 74.6
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 3.0e-55 219.5 156 66.0
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.8e-53 213.0 205 54.6
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.4e-44 184.1 125 68.0
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 4.6e-40 169.1 121 67.8
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.4e-33 147.5 105 66.7
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 7.1e-25 118.6 70 68.6
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.0e-23 114.8 74 74.3
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 1.1e-22 111.3 64 76.6
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.3e-21 107.8 77 67.5
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 8.1e-21 105.1 77 62.3
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.7e-18 97.4 93 52.7
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 9.3e-17 91.7 61 67.2
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 3.9e-15 86.3 76 55.3
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.1e-15 85.9 50 70.0
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 7.4e-14 82.0 43 79.1
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 6.2e-13 79.0 83 48.2
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 1.5e-11 74.3 52 65.4
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 1.5e-11 74.3 56 64.3
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.6e-11 73.6 54 68.5
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.7e-10 70.9 54 63.0
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 4.9e-10 69.3 54 61.1
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.4e-09 67.0 86 47.7
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 2.3e-07 60.5 149 29.5


User provided reference genes

Program Settings