Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02798 Striga asiatica HOM05D008438 ORTHO05D008827 0.0e+00 1416.4 693 100.0
SGA_v2.0_scaffold37G14678 Striga asiatica HOM05D008438 ORTHO05D008827 8.6e-179 631.3 604 58.3
MSTRG.22807 Avicennia marina HOM05D008438 ORTHO05D008827 3.5e-95 353.6 759 37.3
Migut.I00674 Erythranthe guttata HOM05D008438 ORTHO05D008827 1.2e-79 302.0 736 35.6
SalBow7G4248 Salvia bowleyana HOM05D008438 ORTHO05D008827 3.4e-74 283.9 771 32.8
Cc04_g05290 Coffea canephora HOM05D008438 ORTHO05D008827 1.1e-45 189.1 633 28.4
Hma1.2p1_1914F.1_g307390 Hydrangea macrophylla HOM05D008438 ORTHO05D008827 1.1e-35 156.0 202 44.6
Oeu004554.3 Olea europaea HOM05D008438 ORTHO05D008827 2.4e-32 144.8 401 30.7
Actinidia08936 Actinidia chinensis HOM05D017379 ORTHO05D008827 7.8e-31 139.8 162 46.9
HanXRQChr04g0100031 Helianthus annuus HOM05D008438 ORTHO05D008827 7.8e-31 139.8 574 28.0
Peaxi162Scf00314g01044 Petunia axillaris HOM05D008438 ORTHO05D008827 1.3e-28 132.5 309 34.6
GSVIVG01016106001 Vitis vinifera HOM05D008438 ORTHO05D008827 4.8e-28 130.6 79 68.4
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 3.1e-27 127.9 75 72.0
Haze_16688 Corylus avellana HOM05D008438 ORTHO05D008827 4.4e-26 124.0 115 49.6
CAN.G1008.6 Capsicum annuum HOM05D008438 ORTHO05D008827 1.3e-25 122.5 528 28.0
MD17G1226300 Malus domestica HOM05D015689 ORTHO05D008827 1.7e-25 122.1 80 63.8
FvH4_6g28290 Fragaria vesca HOM05D015689 ORTHO05D008827 2.2e-25 121.7 119 52.1
FAN14G1731 Fragaria x ananassa HOM05D015689 ORTHO05D008827 2.2e-25 121.7 119 52.1
FAN02G3655 Fragaria x ananassa HOM05D015689 ORTHO05D008827 2.9e-25 121.3 120 51.7
ECA247G0974 Erigeron canadensis HOM05D008438 ORTHO05D008827 4.9e-25 120.6 154 43.5
RcHm_v2.0_Chr2g0132351 Rosa chinensis HOM05D015689 ORTHO05D008827 4.9e-25 120.6 80 63.8
FAN09G3978 Fragaria x ananassa HOM05D015689 ORTHO05D008827 6.4e-25 120.2 113 51.3
Prupe.3G103500 Prunus persica HOM05D015689 ORTHO05D008827 8.4e-25 119.8 80 61.2
AUR62032995 Chenopodium quinoa HOM05D032589 ORTHO05D008827 1.1e-24 119.4 79 67.1
Rhsim12G0185500 Rhododendron simsii HOM05D017379 ORTHO05D008827 1.4e-24 119.0 161 44.7
TWI18G0426 Tripterygium wilfordii HOM05D008438 ORTHO05D008827 1.4e-24 119.0 182 39.0
Solyc03g117660.4 Solanum lycopersicum HOM05D008438 ORTHO05D008827 1.9e-24 118.6 540 26.3
TAR625G0030 Trochodendron aralioides HOM05D008438 ORTHO05D008827 1.9e-24 118.6 334 31.4
HanXRQChr02g0033611 Helianthus annuus HOM05D008438 ORTHO05D008827 3.2e-24 117.9 581 27.7
Sopen03g036570 Solanum pennellii HOM05D008438 ORTHO05D008827 7.1e-24 116.7 532 26.9
Aqoxy7G03345 Aquilegia oxysepala HOM05D008438 ORTHO05D008827 2.1e-23 115.2 279 34.8
Manes.04G100800 Manihot esculenta HOM05D008438 ORTHO05D008827 6.0e-23 113.6 148 41.2
PGSC0003DMG400014154 Solanum tuberosum HOM05D008438 ORTHO05D008827 6.0e-23 113.6 548 26.3
Glyma.15G002400 Glycine max HOM05D022716 ORTHO05D008827 1.7e-22 112.1 125 48.0
Lj3g0015243 Lotus japonicus HOM05D022716 ORTHO05D008827 1.7e-22 112.1 123 48.0
Manes.11G069100 Manihot esculenta HOM05D008438 ORTHO05D008827 3.0e-22 111.3 183 35.5
Hund12562 Selenicereus undatus HOM05D008438 ORTHO05D008827 5.1e-22 110.5 375 29.1
Actinidia18261 Actinidia chinensis HOM05D017379 ORTHO05D008827 1.1e-21 109.4 170 38.2
Glyma.13G371300 Glycine max HOM05D022716 ORTHO05D008827 1.9e-21 108.6 288 31.2
Duzib235G0641 Durio zibethinus HOM05D032892 ORTHO05D008827 3.3e-21 107.8 129 45.0
Nitab4.5_0002700g0070 Nicotiana tabacum HOM05D008438 ORTHO05D008827 3.3e-21 107.8 558 29.0
Nitab4.5_0004738g0100 Nicotiana tabacum HOM05D008438 ORTHO05D008827 3.3e-21 107.8 541 27.4
VMungo1080G1089 Vigna mungo HOM05D022716 ORTHO05D008827 4.3e-21 107.5 298 29.9
Sabra01G0028800 Salix brachista HOM05D008438 ORTHO05D008827 5.6e-21 107.1 118 44.9
Potri.001G042000 Populus trichocarpa HOM05D008438 ORTHO05D008827 1.3e-20 105.9 135 42.2
EL10Ac8g19397 Beta vulgaris HOM05D032589 ORTHO05D008827 1.6e-20 105.5 324 29.0
Phvul.005G183500 Phaseolus vulgaris HOM05D022716 ORTHO05D008827 2.8e-20 104.8 288 31.6
Sed0012806 Sechium edule HOM05D008438 ORTHO05D008827 2.8e-20 104.8 306 32.4
ClCG09G003500 Citrullus lanatus HOM05D008438 ORTHO05D008827 1.1e-19 102.8 79 55.7
Sc10g0008430 Simmondsia chinensis HOM05D008438 ORTHO05D008827 2.4e-19 101.7 261 33.7
CsaV3_7G031700 Cucumis sativus L. HOM05D008438 ORTHO05D008827 9.0e-19 99.8 79 53.2
unitig_52.g17481 Utricularia gibba HOM05D008438 ORTHO05D008827 9.0e-19 99.8 278 30.9
Eucgr.F03984 Eucalyptus grandis HOM05D008438 ORTHO05D008827 9.9e-18 96.3 213 34.7
MELO3C023487.2 Cucumis melo HOM05D008438 ORTHO05D008827 1.7e-17 95.5 128 39.1
Ciclev10026162m.g Citrus clementina HOM05D008438 ORTHO05D008827 3.8e-17 94.4 264 31.8
PSO063G1826 Papaver somniferum HOM05D008438 ORTHO05D008827 3.8e-17 94.4 78 43.6
CANSAT56G0832 Cannabis sativa HOM05D008438 ORTHO05D008827 6.4e-17 93.6 75 46.7
PSO782G4356 Papaver somniferum HOM05D008438 ORTHO05D008827 8.4e-17 93.2 103 37.9
Lsat_1_v5_gn_4_132640 Lactuca sativa HOM05D008438 ORTHO05D008827 1.1e-16 92.8 50 76.0
Nn8g40077 Nelumbo nucifera HOM05D008438 ORTHO05D008827 1.6e-15 89.0 118 44.1
COL.COLO4_26771 Corchorus olitorius HOM05D032892 ORTHO05D008827 4.6e-15 87.4 412 26.2
Oeu023269.1 Olea europaea HOM05D008438 ORTHO05D008827 5.1e-14 84.0 383 26.9
Dinv42819 Davidia involucrata HOM05D019090 ORTHO05D008827 2.8e-12 78.2 141 34.8
Dinv43281 Davidia involucrata HOM05D019090 ORTHO05D008827 2.8e-12 78.2 141 34.8
Rhsim03G0259300 Rhododendron simsii HOM05D008438 ORTHO05D008827 4.8e-12 77.4 186 31.2
Nitab4.5_0006744g0030 Nicotiana tabacum HOM05D022295 ORTHO05D008827 1.4e-11 75.9 214 30.4
HanXRQChr05g0141581 Helianthus annuus HOM05D019090 ORTHO05D008827 1.8e-11 75.5 99 34.3
TWI32G0905 Tripterygium wilfordii HOM05D008438 ORTHO05D008827 5.3e-11 73.9 75 49.3
Nitab4.5_0001036g0130 Nicotiana tabacum HOM05D022295 ORTHO05D008827 6.9e-11 73.6 221 29.0
Sopen07g002110 Solanum pennellii HOM05D022295 ORTHO05D008827 2.0e-10 72.0 144 34.0
QL02p094184 Quercus lobata HOM05D019529 ORTHO05D008827 2.6e-10 71.6 78 42.3
Sabra06G0137500 Salix brachista HOM05D037217 ORTHO05D008827 2.6e-10 71.6 104 41.3
Peaxi162Scf00563g00416 Petunia axillaris HOM05D022295 ORTHO05D008827 3.4e-10 71.2 141 31.9
Solyc07g005980.2 Solanum lycopersicum HOM05D022295 ORTHO05D008827 3.4e-10 71.2 144 32.6
Thecc.09G153900 Theobroma cacao HOM05D019525 ORTHO05D008827 4.5e-10 70.9 78 44.9
HanXRQChr05g0131701 Helianthus annuus HOM05D019090 ORTHO05D008827 5.8e-10 70.5 152 28.9
Actinidia38661 Actinidia chinensis HOM05D008438 ORTHO05D008827 1.7e-09 68.9 80 40.0
Cfa020785 Carpinus fangiana HOM05D019529 ORTHO05D008827 8.4e-09 66.6 132 31.8
COL.COLO4_05403 Corchorus olitorius HOM05D019525 ORTHO05D008827 1.1e-08 66.2 173 31.8
TWI34G1835 Tripterygium wilfordii HOM05D008438 ORTHO05D008827 1.1e-08 66.2 134 33.6
Potri.006G180600 Populus trichocarpa HOM05D037217 ORTHO05D008827 2.5e-08 65.1 102 38.2
Os03g0326300 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004239 9.3e-08 63.2 63 47.6
Peaxi162Scf00222g00063 Petunia axillaris HOM05D001860 ORTHO05D004239 9.3e-08 63.2 70 42.9
Gohir.A13G076600 Gossypium hirsutum HOM05D001860 ORTHO05D004239 1.2e-07 62.8 67 43.3
PGSC0003DMG400018432 Solanum tuberosum HOM05D001860 ORTHO05D004239 1.2e-07 62.8 70 42.9
CAN.G1596.4 Capsicum annuum HOM05D001860 ORTHO05D004239 1.6e-07 62.4 70 42.9
Sopen05g003680 Solanum pennellii HOM05D001860 ORTHO05D004239 1.6e-07 62.4 70 42.9
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.1e-07 62.0 70 41.4
Gorai.007G267000 Gossypium raimondii HOM05D001860 ORTHO05D004239 2.7e-07 61.6 77 37.7
Nitab4.5_0000040g0150 Nicotiana tabacum HOM05D001860 ORTHO05D004239 2.7e-07 61.6 70 42.9
Nitab4.5_0004623g0030 Nicotiana tabacum HOM05D001860 ORTHO05D004239 2.7e-07 61.6 82 39.0
Ciclev10020925m.g Citrus clementina HOM05D001860 ORTHO05D004239 6.0e-07 60.5 77 37.7
Gohir.A11G239600 Gossypium hirsutum HOM05D001860 ORTHO05D004239 6.0e-07 60.5 77 37.7
TAR315G0003 Trochodendron aralioides HOM05D001860 ORTHO05D004239 6.0e-07 60.5 66 43.9
Lj6A786T64 Lonicera japonica HOM05D001860 ORTHO05D004239 1.0e-06 59.7 74 41.9
Solyc05g007820.4 Solanum lycopersicum HOM05D001860 ORTHO05D004239 1.0e-06 59.7 70 41.4
Carub.0004s0054 Capsella rubella HOM05D001507 ORTHO05D002108 1.3e-06 59.3 63 41.3
PGR042G3367 Punica granatum HOM05D001860 ORTHO05D004239 1.3e-06 59.3 77 35.1
Zm00001eb395410 Zea mays HOM05D001860 ORTHO05D004239 1.3e-06 59.3 78 41.0
HanXRQChr17g0545271 Helianthus annuus HOM05D001860 ORTHO05D004239 1.8e-06 58.9 87 37.9
Gohir.D11G249300 Gossypium hirsutum HOM05D001860 ORTHO05D004239 2.3e-06 58.5 77 36.4
Gohir.D13G076300 Gossypium hirsutum HOM05D001860 ORTHO05D004239 2.3e-06 58.5 66 40.9
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 2.3e-06 58.5 66 40.9
ECA234G2497 Erigeron canadensis HOM05D019529 ORTHO05D008827 3.0e-06 58.2 99 32.3
ECA236G4040 Erigeron canadensis HOM05D019090 ORTHO05D008827 3.0e-06 58.2 113 31.0
Sabra18G0088400 Salix brachista HOM05D037217 ORTHO05D008827 3.0e-06 58.2 67 41.8
GSVIVG01033378001 Vitis vinifera HOM05D001860 ORTHO05D004239 3.9e-06 57.8 77 35.1
Cpa.g.sc350.2 Carica papaya HOM05D001860 ORTHO05D004239 5.1e-06 57.4 66 40.9
Dinv34137 Davidia involucrata HOM05D001860 ORTHO05D004239 5.1e-06 57.4 66 39.4
ECA246G2415 Erigeron canadensis HOM05D001860 ORTHO05D004239 5.1e-06 57.4 77 39.0
Duzib128G1505 Durio zibethinus HOM05D001860 ORTHO05D004239 6.7e-06 57.0 120 32.5
Lj2g0002980 Lotus japonicus HOM05D001860 ORTHO05D004239 6.7e-06 57.0 66 39.4
QL03p068534 Quercus lobata HOM05D001860 ORTHO05D004239 6.7e-06 57.0 74 40.5
Thecc.05G258500 Theobroma cacao HOM05D001860 ORTHO05D004239 6.7e-06 57.0 120 32.5
Nn4g23213 Nelumbo nucifera HOM05D001860 ORTHO05D004239 8.7e-06 56.6 66 40.9
Sabra13G0053800 Salix brachista HOM05D001860 ORTHO05D004239 8.7e-06 56.6 81 35.8


User provided reference genes

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