Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02787 Striga asiatica HOM05D007168 ORTHO05D009495 5.8e-132 474.2 230 100.0
SGA_v2.0_scaffold5G02789 Striga asiatica HOM05D007168 ORTHO05D009495 6.7e-88 327.8 173 91.9
SalBow7G1021 Salvia bowleyana HOM05D007168 ORTHO05D009495 1.5e-50 203.8 188 56.4
MSTRG.11185 Avicennia marina HOM05D007168 ORTHO05D009495 3.6e-49 199.1 193 57.5
Migut.I00688 Erythranthe guttata HOM05D007168 ORTHO05D009495 4.6e-44 182.2 181 55.8
Actinidia25477 Actinidia chinensis HOM05D007168 ORTHO05D009495 2.3e-40 169.9 191 49.2
Oeu060108.1 Olea europaea HOM05D007168 ORTHO05D009495 1.2e-39 167.5 163 52.1
vmacro19062 Vaccinium macrocarpon HOM05D007168 ORTHO05D009495 1.7e-38 163.7 193 49.7
Rhsim08G0204200 Rhododendron simsii HOM05D007168 ORTHO05D009495 1.9e-34 150.2 195 46.2
Dinv21416 Davidia involucrata HOM05D007168 ORTHO05D009495 1.1e-32 144.4 195 43.6
Solyc03g117570.3 Solanum lycopersicum HOM05D007168 ORTHO05D009495 2.4e-32 143.3 117 52.1
Nitab4.5_0009867g0020 Nicotiana tabacum HOM05D007168 ORTHO05D009495 3.1e-32 142.9 133 48.9
Nitab4.5_0002700g0140 Nicotiana tabacum HOM05D007168 ORTHO05D009495 6.8e-32 141.7 133 48.1
Sopen03g036480 Solanum pennellii HOM05D007168 ORTHO05D009495 6.8e-32 141.7 117 52.1
Peaxi162Scf00553g00536 Petunia axillaris HOM05D007168 ORTHO05D009495 2.4e-29 133.3 182 40.7
Prupe.3G099700 Prunus persica HOM05D007168 ORTHO05D009495 9.2e-29 131.3 187 43.3
Potri.001G043500 Populus trichocarpa HOM05D007168 ORTHO05D009495 3.5e-28 129.4 185 42.2
Lj9C678G6 Lonicera japonica HOM05D007168 ORTHO05D009495 6.0e-28 128.6 179 38.0
TAR383G0144 Trochodendron aralioides HOM05D007168 ORTHO05D009495 7.8e-28 128.3 156 41.7
RcHm_v2.0_Chr2g0132781 Rosa chinensis HOM05D007168 ORTHO05D009495 3.9e-27 125.9 158 43.7
Haze_16675 Corylus avellana HOM05D007168 ORTHO05D009495 1.1e-26 124.4 196 39.8
Sabra01G0030000 Salix brachista HOM05D007168 ORTHO05D009495 5.6e-26 122.1 182 41.2
Hund02412 Selenicereus undatus HOM05D007168 ORTHO05D009495 5.6e-26 122.1 194 42.3
Cfa001873 Carpinus fangiana HOM05D007168 ORTHO05D009495 1.6e-25 120.6 192 38.5
Manes.11G067300 Manihot esculenta HOM05D007168 ORTHO05D009495 1.6e-25 120.6 189 39.2
MD17G1224000 Malus domestica HOM05D007168 ORTHO05D009495 2.8e-25 119.8 184 41.8
HanXRQChr16g0499391 Helianthus annuus HOM05D007168 ORTHO05D009495 8.1e-25 118.2 180 38.3
FvH4_6g28510 Fragaria vesca HOM05D007168 ORTHO05D009495 2.4e-24 116.7 183 42.1
FAN05G2163 Fragaria x ananassa HOM05D007168 ORTHO05D009495 3.1e-24 116.3 187 41.7
CANSAT56G0521 Cannabis sativa HOM05D007168 ORTHO05D009495 1.5e-23 114.0 191 38.2
FAN02G2323 Fragaria x ananassa HOM05D007168 ORTHO05D009495 3.4e-23 112.8 187 40.6
QL05p035661 Quercus lobata HOM05D007168 ORTHO05D009495 7.6e-23 111.7 179 36.9
AUR62025876 Chenopodium quinoa HOM05D007168 ORTHO05D009495 1.3e-22 110.9 149 40.3
ECA232G3944 Erigeron canadensis HOM05D000470 ORTHO05D000348 1.3e-22 110.9 106 47.2
MELO3C023471.2 Cucumis melo HOM05D007168 ORTHO05D009495 2.2e-22 110.2 74 63.5
GSVIVG01015982001 Vitis vinifera HOM05D007168 ORTHO05D009495 2.2e-22 110.2 180 38.3
Lsat_1_v5_gn_4_86841 Lactuca sativa HOM05D007168 ORTHO05D009495 2.9e-22 109.8 148 41.2
AUR62029846 Chenopodium quinoa HOM05D007168 ORTHO05D009495 3.8e-22 109.4 122 43.4
Gohir.A06G114400 Gossypium hirsutum HOM05D007168 ORTHO05D009495 3.8e-22 109.4 194 36.6
Gorai.010G136600 Gossypium raimondii HOM05D007168 ORTHO05D009495 3.8e-22 109.4 189 37.0
DCAR_025556 Daucus carota HOM05D007168 ORTHO05D009495 4.9e-22 109.0 185 37.3
MBI15_g18239_MAGBIO Magnolia biondii HOM05D007168 ORTHO05D009495 4.9e-22 109.0 181 36.5
Gohir.D06G118800 Gossypium hirsutum HOM05D007168 ORTHO05D009495 1.9e-21 107.1 189 36.5
ClCG09G003370 Citrullus lanatus HOM05D007168 ORTHO05D009495 5.4e-21 105.5 174 37.4
EL10Ac5g11420 Beta vulgaris HOM05D007168 ORTHO05D009495 7.1e-21 105.1 191 37.7
DCAR_025559 Daucus carota HOM05D007168 ORTHO05D009495 2.1e-20 103.6 115 39.1
Duzib235G0567 Durio zibethinus HOM05D007168 ORTHO05D009495 4.6e-20 102.4 194 37.1
Carub.0002s2664 Capsella rubella HOM05D007168 ORTHO05D009495 1.0e-19 101.3 178 36.5
CAN.G407.4 Capsicum annuum HOM05D007168 ORTHO05D009495 1.7e-19 100.5 77 55.8
AT1G80880 Arabidopsis thaliana HOM05D007168 ORTHO05D009495 2.3e-19 100.1 152 36.8
Thecc.06G043100 Theobroma cacao HOM05D007168 ORTHO05D009495 2.3e-19 100.1 189 35.4
CsaV3_7G031860 Cucumis sativus L. HOM05D007168 ORTHO05D009495 3.0e-19 99.8 175 37.7
Sed0006951 Sechium edule HOM05D007168 ORTHO05D009495 3.9e-19 99.4 171 38.6
A02p23080 Brassica napus HOM05D007168 ORTHO05D009495 6.6e-19 98.6 140 37.9
BraA02t07306Z Brassica rapa HOM05D007168 ORTHO05D009495 1.1e-18 97.8 149 36.9
BcaB05g25219 Brassica carinata HOM05D007168 ORTHO05D009495 1.5e-18 97.4 136 37.5
CARHR073590 Cardamine hirsuta HOM05D007168 ORTHO05D009495 1.5e-18 97.4 137 38.7
C02p36840 Brassica napus HOM05D007168 ORTHO05D009495 4.3e-18 95.9 149 35.6
Cpa.g.sc10.62 Carica papaya HOM05D007168 ORTHO05D009495 4.3e-18 95.9 187 34.2
CiPaw.01G255400 Carya illinoinensis HOM05D007168 ORTHO05D009495 4.3e-18 95.9 95 45.3
COL.COLO4_26742 Corchorus olitorius HOM05D007168 ORTHO05D009495 2.1e-17 93.6 191 35.1
Eucgr.J03119 Eucalyptus grandis HOM05D007168 ORTHO05D009495 2.1e-17 93.6 166 33.7
BolC2t09695H Brassica oleracea HOM05D007168 ORTHO05D009495 2.8e-17 93.2 151 36.4
Atru.chr1.2792 Acer truncatum HOM05D007168 ORTHO05D009495 3.6e-17 92.8 181 35.4
BcaC03g15921 Brassica carinata HOM05D007168 ORTHO05D009495 3.6e-17 92.8 160 35.0
Sp5g34860 Schrenkiella parvula HOM05D007168 ORTHO05D009495 4.8e-17 92.4 171 33.9
AL2G40500 Arabidopsis lyrata HOM05D007168 ORTHO05D009495 6.2e-17 92.0 156 34.0
Thhalv10018367m.g Eutrema salsugineum HOM05D007168 ORTHO05D009495 8.1e-17 91.7 190 33.2
arahy.Tifrunner.gnm1.ann1.W35K7D Arachis hypogaea HOM05D007168 ORTHO05D009495 1.8e-16 90.5 90 46.7
Ciclev10025296m.g Citrus clementina HOM05D007168 ORTHO05D009495 2.4e-16 90.1 91 45.1
arahy.Tifrunner.gnm1.ann1.6LU9QM Arachis hypogaea HOM05D007168 ORTHO05D009495 3.1e-16 89.7 90 46.7
THA.LOC104812413 Tarenaya hassleriana HOM05D007168 ORTHO05D009495 3.1e-16 89.7 187 33.2
Aa31LG4G1190 Aethionema arabicum HOM05D007168 ORTHO05D009495 6.9e-16 88.6 155 36.1
PGR031G0296 Punica granatum HOM05D007168 ORTHO05D009495 3.4e-15 86.3 179 37.4
Lalb_Chr22g0349411 Lupinus albus HOM05D007168 ORTHO05D009495 5.8e-15 85.5 77 50.6
PSO384G0786 Papaver somniferum HOM05D007168 ORTHO05D009495 3.8e-14 82.8 78 44.9
FAN05G2448 Fragaria x ananassa HOM05D007168 ORTHO05D009495 1.6e-12 77.4 158 34.2
Ca_01008_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 2.1e-12 77.0 139 33.8
SHI11350 Sapria himalayana HOM05D007168 ORTHO05D009495 1.8e-11 73.9 184 33.2
Aqoxy1G03019 Aquilegia oxysepala HOM05D007168 ORTHO05D009495 2.3e-11 73.6 188 30.3
CDE04G0318 Ceratophyllum demersum HOM05D007168 ORTHO05D009495 2.3e-11 73.6 134 29.9
HPP92_010744 Vanilla planifolia HOM05D007168 ORTHO05D009495 3.0e-11 73.2 164 32.9
VMungo1080G0083 Vigna mungo HOM05D007168 ORTHO05D009495 5.1e-11 72.4 169 35.5
Glyma.13G370800 Glycine max HOM05D007168 ORTHO05D009495 3.3e-10 69.7 68 48.5
Psat5g306800 Pisum sativum HOM05D007168 ORTHO05D009495 3.3e-10 69.7 68 45.6
Glyma.15G002750 Glycine max HOM05D007168 ORTHO05D009495 5.6e-10 68.9 68 47.1
Lj3g0012904 Lotus japonicus HOM05D007168 ORTHO05D009495 1.3e-09 67.8 66 47.0
Phvul.005G183000 Phaseolus vulgaris HOM05D007168 ORTHO05D009495 8.1e-09 65.1 131 35.1
Medtr8g098955 Medicago truncatula HOM05D007168 ORTHO05D009495 1.2e-07 61.2 68 44.1
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 3.8e-06 56.2 145 30.3


User provided reference genes

Program Settings