Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02782 Striga asiatica HOM05D006888 ORTHO05D008371 1.2e-136 491.1 436 100.0
SalBow3G0195 Salvia bowleyana HOM05D006888 ORTHO05D008371 1.3e-61 241.9 208 58.2
Migut.K00794 Erythranthe guttata HOM05D006888 ORTHO05D008371 7.8e-59 232.6 207 57.5
Oeu064824.1 Olea europaea HOM05D006888 ORTHO05D008371 1.4e-52 211.8 292 66.4
PGSC0003DMG400002802 Solanum tuberosum HOM05D006888 ORTHO05D008371 1.0e-50 205.7 209 53.6
Solyc01g100450.1 Solanum lycopersicum HOM05D006888 ORTHO05D008371 3.0e-50 204.1 205 54.6
Sopen01g043970 Solanum pennellii HOM05D006888 ORTHO05D008371 3.9e-50 203.8 205 54.6
CAN.G1715.1 Capsicum annuum HOM05D006888 ORTHO05D008371 1.8e-47 194.9 209 52.2
Nitab4.5_0000368g0090 Nicotiana tabacum HOM05D006888 ORTHO05D008371 2.0e-46 191.4 214 50.5
Duzib177G0618 Durio zibethinus HOM05D006888 ORTHO05D008371 2.7e-43 181.0 193 50.3
Peaxi162Scf00673g00033 Petunia axillaris HOM05D006888 ORTHO05D008371 2.7e-43 181.0 166 56.0
ClCG02G014950 Citrullus lanatus HOM05D006888 ORTHO05D008371 5.6e-41 173.3 181 50.3
MELO3C004188.2 Cucumis melo HOM05D006888 ORTHO05D008371 1.6e-40 171.8 208 46.6
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 2.1e-40 171.4 210 45.7
Cfa006701 Carpinus fangiana HOM05D006888 ORTHO05D008371 4.8e-40 170.2 181 48.1
GSVIVG01031237001 Vitis vinifera HOM05D006888 ORTHO05D008371 4.8e-40 170.2 181 49.7
CSS0050387 Camellia sinensis var. sinensis HOM05D006888 ORTHO05D008371 5.3e-39 166.8 183 47.5
Gorai.007G306300 Gossypium raimondii HOM05D006888 ORTHO05D008371 5.3e-39 166.8 179 49.2
Hma1.2p1_0472F.1_g160001 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 5.3e-39 166.8 182 49.5
CSS0014440 Camellia sinensis var. sinensis HOM05D006888 ORTHO05D008371 6.9e-39 166.4 190 46.3
Manes.03G083400 Manihot esculenta HOM05D006888 ORTHO05D008371 6.9e-39 166.4 212 44.3
Gohir.D11G283400 Gossypium hirsutum HOM05D006888 ORTHO05D008371 9.0e-39 166.0 179 49.2
Gohir.A11G273300 Gossypium hirsutum HOM05D006888 ORTHO05D008371 4.5e-38 163.7 176 49.4
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 8.4e-37 159.5 181 45.9
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 1.9e-36 158.3 180 47.2
Potri.005G014500 Populus trichocarpa HOM05D006888 ORTHO05D008371 2.4e-36 157.9 183 44.8
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 5.5e-36 156.8 194 44.8
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 4.6e-35 153.7 180 45.6
Glyma.11G103200 Glycine max HOM05D006888 ORTHO05D008371 7.9e-35 152.9 182 45.1
Medtr4g108060 Medicago truncatula HOM05D006888 ORTHO05D008371 1.0e-34 152.5 180 46.1
TPR.G21561 Trifolium pratense HOM05D006888 ORTHO05D008371 1.0e-34 152.5 182 44.5
Phvul.002G058500 Phaseolus vulgaris HOM05D006888 ORTHO05D008371 3.0e-34 151.0 182 41.8
Psat5g190440 Pisum sativum HOM05D006888 ORTHO05D008371 3.0e-34 151.0 192 44.3
Medtr4g074390 Medicago truncatula HOM05D006888 ORTHO05D008371 3.9e-34 150.6 180 45.6
Ciclev10003346m.g Citrus clementina HOM05D006888 ORTHO05D008371 5.1e-34 150.2 219 42.5
RcHm_v2.0_Chr2g0099761 Rosa chinensis HOM05D006888 ORTHO05D008371 5.1e-34 150.2 180 44.4
VMungo1215G1495 Vigna mungo HOM05D006888 ORTHO05D008371 5.1e-34 150.2 182 41.2
TWI56G0663 Tripterygium wilfordii HOM05D006888 ORTHO05D008371 6.7e-34 149.8 202 41.6
Nn1g08113 Nelumbo nucifera HOM05D006888 ORTHO05D008371 1.5e-33 148.7 184 44.0
Lsat_1_v5_gn_7_74401 Lactuca sativa HOM05D006888 ORTHO05D008371 1.9e-33 148.3 190 43.7
FvH4_1g12100 Fragaria vesca HOM05D006888 ORTHO05D008371 2.5e-33 147.9 178 47.2
Ca_03033_v3 Cicer arietinum L. HOM05D006888 ORTHO05D008371 4.3e-33 147.1 182 43.4
FAN19G1999 Fragaria x ananassa HOM05D006888 ORTHO05D008371 4.3e-33 147.1 178 47.2
QL03p039859 Quercus lobata HOM05D006888 ORTHO05D008371 7.4e-33 146.4 183 44.3
EL10Ac4g09447 Beta vulgaris HOM05D006888 ORTHO05D008371 9.6e-33 146.0 183 41.0
Lj3g0005449 Lotus japonicus HOM05D006888 ORTHO05D008371 9.6e-33 146.0 182 42.9
QL03p013638 Quercus lobata HOM05D006888 ORTHO05D008371 9.6e-33 146.0 183 44.3
TAR362G0873 Trochodendron aralioides HOM05D006888 ORTHO05D008371 2.8e-32 144.4 184 45.7
FAN23G2816 Fragaria x ananassa HOM05D006888 ORTHO05D008371 4.8e-32 143.7 201 43.8
arahy.Tifrunner.gnm1.ann1.8HC1KC Arachis hypogaea HOM05D006888 ORTHO05D008371 8.1e-32 142.9 181 42.5
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 1.1e-31 142.5 210 40.0
Sc16g0009020 Simmondsia chinensis HOM05D006888 ORTHO05D008371 1.4e-31 142.1 205 39.5
FAN19G0192 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.8e-31 141.7 201 43.3
FAN28G0085 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.8e-31 141.7 201 43.3
FAN26G0552 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.4e-31 141.4 178 47.2
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 3.1e-31 141.0 210 39.5
HanXRQChr02g0059161 Helianthus annuus HOM05D006888 ORTHO05D008371 3.1e-31 141.0 203 43.8
arahy.Tifrunner.gnm1.ann1.8QK61L Arachis hypogaea HOM05D006888 ORTHO05D008371 5.3e-31 140.2 181 42.0
Lalb_Chr01g0001501 Lupinus albus HOM05D006888 ORTHO05D008371 2.6e-30 137.9 181 40.3
RcHm_v2.0_Chr3g0457031 Rosa chinensis HOM05D006888 ORTHO05D008371 2.6e-30 137.9 180 42.8
THA.LOC104820294 Tarenaya hassleriana HOM05D006888 ORTHO05D008371 3.4e-30 137.5 181 43.1
CiPaw.08G155700 Carya illinoinensis HOM05D006888 ORTHO05D008371 5.8e-30 136.7 181 42.5
CANSAT54G0476 Cannabis sativa HOM05D006888 ORTHO05D008371 2.2e-29 134.8 198 41.4
CARHR009830 Cardamine hirsuta HOM05D006888 ORTHO05D008371 2.2e-29 134.8 180 41.7
MD02G1110600 Malus domestica HOM05D006888 ORTHO05D008371 2.9e-29 134.4 180 40.6
AT1G09820 Arabidopsis thaliana HOM05D006888 ORTHO05D008371 1.1e-28 132.5 180 40.0
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 1.4e-28 132.1 185 41.1
A06p06540 Brassica napus HOM05D006888 ORTHO05D008371 1.4e-28 132.1 188 41.5
Aqoxy3G04232 Aquilegia oxysepala HOM05D006888 ORTHO05D008371 1.9e-28 131.7 190 41.6
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 1.9e-28 131.7 182 40.7
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 4.2e-28 130.6 180 39.4
BraA06t23865Z Brassica rapa HOM05D006888 ORTHO05D008371 5.5e-28 130.2 188 42.0
Actinidia35523 Actinidia chinensis HOM05D006888 ORTHO05D008371 7.1e-28 129.8 178 42.1
Aa31LG1G5110 Aethionema arabicum HOM05D006888 ORTHO05D008371 7.1e-28 129.8 180 38.3
Hma1.2p1_0052F.1_g030800 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 9.3e-28 129.4 126 54.0
Psat5g190520 Pisum sativum HOM05D006888 ORTHO05D008371 9.3e-28 129.4 138 47.1
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 2.7e-27 127.9 181 39.8
Thhalv10009487m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 7.9e-27 126.3 180 38.3
Sp1g08450 Schrenkiella parvula HOM05D006888 ORTHO05D008371 1.3e-26 125.6 180 40.0
PGR083G0380 Punica granatum HOM05D006888 ORTHO05D008371 3.0e-26 124.4 170 45.3
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 2.5e-25 121.3 209 39.7
CDE05G0641 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 4.3e-25 120.6 173 41.6
FvH4_6g07430 Fragaria vesca HOM05D006888 ORTHO05D008371 4.3e-25 120.6 180 37.2
Psat5g177360 Pisum sativum HOM05D006888 ORTHO05D008371 4.3e-25 120.6 193 37.8
FAN14G0975 Fragaria x ananassa HOM05D006888 ORTHO05D008371 5.7e-25 120.2 180 37.2
EL10Ac4g09424 Beta vulgaris HOM05D006888 ORTHO05D008371 2.1e-24 118.2 162 40.1
Atru.BG.136.p Acer truncatum HOM05D006888 ORTHO05D008371 8.2e-24 116.3 124 50.8
BcaC05g24842 Brassica carinata HOM05D006888 ORTHO05D008371 2.9e-21 107.8 210 32.9
AUR62000398 Chenopodium quinoa HOM05D006888 ORTHO05D008371 1.4e-20 105.5 129 43.4
ClCG00G002450 Citrullus lanatus HOM05D006888 ORTHO05D008371 3.2e-20 104.4 181 35.9
Lj5A334T57 Lonicera japonica HOM05D006888 ORTHO05D008371 5.5e-20 103.6 179 34.1
Ah.06g195940 Amaranthus hybridus HOM05D006888 ORTHO05D008371 4.6e-19 100.5 115 45.2
AUR62006754 Chenopodium quinoa HOM05D006888 ORTHO05D008371 6.7e-18 96.7 134 38.1
Thhalv10000737m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 4.3e-17 94.0 105 42.9
vmacro01561 Vaccinium macrocarpon HOM05D006888 ORTHO05D008371 1.4e-15 89.0 88 48.9
SEGI_04891 Sequoiadendron giganteum HOM05D006888 ORTHO05D008371 2.4e-15 88.2 185 30.8
Psat7g173680 Pisum sativum HOM05D006888 ORTHO05D008371 6.9e-15 86.7 161 38.5
Hma1.2p1_0472F.1_g160010 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 4.5e-14 84.0 65 56.9
Hma1.2p1_0472F.1_g160023 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 4.5e-14 84.0 65 56.9
Cc02_g35010 Coffea canephora HOM05D006888 ORTHO05D008371 6.5e-13 80.1 62 53.2
Thecc.05G322900 Theobroma cacao HOM05D006888 ORTHO05D008371 1.1e-12 79.3 67 53.7
ECA236G2032 Erigeron canadensis HOM05D004601 ORTHO05D005806 4.2e-12 77.4 75 46.7
DCAR_005421 Daucus carota HOM05D006888 ORTHO05D008371 1.6e-11 75.5 65 56.9
Nitab4.5_0004873g0030 Nicotiana tabacum HOM05D006888 ORTHO05D008371 6.1e-11 73.6 62 58.1
Nn5g29749 Nelumbo nucifera HOM05D007390 ORTHO05D009114 7.9e-11 73.2 213 25.8
Eucgr.A00652 Eucalyptus grandis HOM05D006888 ORTHO05D008371 1.0e-10 72.8 63 50.8
Sabra05G0011500 Salix brachista HOM05D006888 ORTHO05D008371 1.4e-10 72.4 63 50.8
FAN09G2872 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.3e-10 71.6 73 45.2
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 8.8e-10 69.7 188 28.2
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 8.8e-10 69.7 188 28.2
Duzib133G1060 Durio zibethinus HOM05D006931 ORTHO05D008782 2.0e-09 68.6 191 29.8
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 2.0e-09 68.6 191 29.3
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 2.6e-09 68.2 191 29.3
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 5.7e-09 67.0 179 26.8
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 7.4e-09 66.6 191 29.3
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 1.3e-08 65.9 191 28.8
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 2.2e-08 65.1 179 26.3
FAN02G2736 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.8e-08 64.7 46 52.2
Aa31LG2G3020 Aethionema arabicum HOM05D007291 ORTHO05D009038 6.3e-08 63.5 184 27.2
Sp5g21370 Schrenkiella parvula HOM05D007291 ORTHO05D009038 6.3e-08 63.5 198 26.3
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 1.1e-07 62.8 190 28.4
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 1.8e-07 62.0 176 27.3
Manes.15G058900 Manihot esculenta HOM05D007390 ORTHO05D009114 1.8e-07 62.0 184 26.6
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 2.4e-07 61.6 176 26.7
FAN05G5053 Fragaria x ananassa HOM05D006931 ORTHO05D008782 3.1e-07 61.2 191 28.3
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 3.1e-07 61.2 190 26.8
PGSC0003DMG401014601 Solanum tuberosum HOM05D007291 ORTHO05D009038 3.1e-07 61.2 194 27.3
AL7G49460 Arabidopsis lyrata HOM05D007358 ORTHO05D009117 9.1e-07 59.7 140 28.6
Ciclev10018243m.g Citrus clementina HOM05D006931 ORTHO05D008782 9.1e-07 59.7 191 28.3
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 9.1e-07 59.7 189 28.6
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 9.1e-07 59.7 127 32.3
Thecc.05G322800 Theobroma cacao HOM05D006888 ORTHO05D008371 9.1e-07 59.7 103 35.9
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 1.2e-06 59.3 126 29.4
Lsat_1_v5_gn_2_69440 Lactuca sativa HOM05D007291 ORTHO05D009038 1.2e-06 59.3 151 25.8
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 1.5e-06 58.9 126 29.4
Dinv24442 Davidia involucrata HOM05D006888 ORTHO05D008371 1.5e-06 58.9 120 34.2
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 1.5e-06 58.9 188 26.1
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 2.0e-06 58.5 209 25.8
CARHR269210 Cardamine hirsuta HOM05D007390 ORTHO05D009114 2.6e-06 58.2 199 25.6
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 3.4e-06 57.8 145 24.8
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 4.5e-06 57.4 192 27.6
BcaB08g35944 Brassica carinata HOM05D007390 ORTHO05D009114 5.9e-06 57.0 195 28.2
BcaB08g35947 Brassica carinata HOM05D007390 ORTHO05D009114 5.9e-06 57.0 195 28.2
BcaB08g35953 Brassica carinata HOM05D007390 ORTHO05D009114 5.9e-06 57.0 191 29.3
BcaC04g20197 Brassica carinata HOM05D007390 ORTHO05D009114 5.9e-06 57.0 195 28.2
C09p46770 Brassica napus HOM05D007390 ORTHO05D009114 5.9e-06 57.0 195 28.2
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 5.9e-06 57.0 207 26.1
FAN02G4040 Fragaria x ananassa HOM05D006931 ORTHO05D008782 5.9e-06 57.0 191 27.7
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 5.9e-06 57.0 190 28.9
Rhsim04G0012100 Rhododendron simsii HOM05D007390 ORTHO05D009114 5.9e-06 57.0 191 23.6
SEGI_14415 Sequoiadendron giganteum HOM05D006931 ORTHO05D009509 5.9e-06 57.0 198 25.3
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 7.7e-06 56.6 156 29.5
BcaB06g27500 Brassica carinata HOM05D007358 ORTHO05D009117 7.7e-06 56.6 146 28.1
A10p13050 Brassica napus HOM05D007390 ORTHO05D009114 7.7e-06 56.6 195 27.2
MBI19_g25580_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 7.7e-06 56.6 186 26.9
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 7.7e-06 56.6 169 26.6


User provided reference genes

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