Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 0.0e+00 1161.7 597 100.0
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 5.2e-108 396.0 481 50.3
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 3.9e-95 353.2 564 46.6
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 6.4e-90 335.9 472 46.8
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 5.4e-89 332.8 420 49.5
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.1e-86 325.1 458 46.9
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.5e-86 324.7 476 46.6
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.1e-84 318.5 472 45.1
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 1.5e-83 314.7 480 44.2
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 3.2e-81 307.0 458 44.8
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 5.4e-81 306.2 461 44.9
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.2e-80 305.1 377 49.1
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 1.2e-80 305.1 433 46.7
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 2.7e-80 303.9 443 47.4
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 2.7e-80 303.9 460 45.7
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 3.9e-79 300.1 454 44.9
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 3.9e-79 300.1 463 44.9
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 8.7e-79 298.9 431 44.5
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 1.1e-78 298.5 502 43.2
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 2.8e-77 293.9 474 43.7
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 3.7e-77 293.5 496 42.9
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.1e-76 292.0 408 46.1
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 2.4e-76 290.8 463 42.5
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.0e-75 287.7 463 42.3
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.3e-74 285.0 469 40.5
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 6.4e-74 282.7 442 42.1
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 2.5e-73 280.8 493 41.2
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 7.1e-73 279.3 497 43.7
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 9.3e-73 278.9 457 44.0
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.7e-72 277.3 466 40.6
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 3.5e-72 276.9 512 39.6
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 4.6e-72 276.6 527 38.5
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.3e-71 275.0 487 40.9
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.8e-71 274.6 443 41.8
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 1.8e-71 274.6 443 41.8
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 3.0e-71 273.9 446 42.4
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 3.9e-71 273.5 431 42.7
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 6.7e-71 272.7 478 41.8
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 7.4e-70 269.2 440 43.4
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 6.2e-69 266.2 399 45.1
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.4e-68 265.0 399 42.9
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 2.0e-67 261.2 601 36.4
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 5.8e-67 259.6 481 41.0
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 4.9e-66 256.5 471 39.1
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.5e-65 254.2 491 39.7
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 4.2e-65 253.4 450 39.1
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 5.5e-65 253.1 417 43.9
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.2e-64 251.9 436 41.7
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.1e-64 251.1 419 39.4
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 3.5e-64 250.4 432 41.4
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 6.0e-64 249.6 446 39.2
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 6.0e-64 249.6 465 40.4
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 6.0e-64 249.6 364 42.3
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.8e-63 248.1 467 38.1
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 3.9e-63 246.9 450 39.6
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 6.7e-63 246.1 453 38.6
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 8.7e-63 245.7 447 39.1
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.1e-62 245.4 512 39.8
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 3.3e-62 243.8 319 46.7
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.3e-62 243.4 461 39.5
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 7.4e-62 242.7 470 40.6
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 9.7e-62 242.3 449 39.0
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 1.6e-61 241.5 417 39.1
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.6e-61 241.5 465 37.2
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.2e-61 241.1 452 38.3
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.2e-61 241.1 442 41.2
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 2.8e-61 240.7 418 39.5
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 8.2e-61 239.2 417 38.8
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 8.2e-61 239.2 434 42.2
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 8.2e-61 239.2 486 38.1
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 1.1e-60 238.8 434 39.9
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 1.1e-60 238.8 373 42.4
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.4e-60 238.4 418 39.2
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 3.1e-60 237.3 460 39.3
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 4.1e-60 236.9 439 38.5
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.1e-60 236.9 530 38.5
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 5.3e-60 236.5 439 38.3
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 5.3e-60 236.5 445 38.9
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 9.0e-60 235.7 382 42.1
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 1.2e-59 235.3 445 38.9
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 1.2e-59 235.3 441 38.3
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 2.6e-59 234.2 444 38.1
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 3.4e-59 233.8 441 38.3
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 4.5e-59 233.4 448 37.7
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 5.9e-59 233.0 408 39.2
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 7.7e-59 232.6 414 37.7
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 1.0e-58 232.3 442 38.9
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.0e-58 232.3 442 38.7
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.0e-58 232.3 486 39.9
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.7e-58 231.5 394 42.4
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 3.8e-58 230.3 432 40.7
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 6.5e-58 229.6 443 38.6
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 2.5e-57 227.6 403 39.7
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 2.5e-57 227.6 447 38.3
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 7.2e-57 226.1 372 41.1
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.6e-56 223.8 464 36.0
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 6.1e-56 223.0 436 37.8
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 3.0e-55 220.7 386 42.7
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 3.9e-55 220.3 384 37.2
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 5.1e-55 219.9 360 40.8
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.1e-54 218.8 435 38.6
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.1e-54 218.8 369 40.7
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 3.3e-54 217.2 448 35.7
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 3.3e-54 217.2 449 37.0
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.2e-53 214.5 459 35.9
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 4.8e-53 213.4 280 46.4
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 4.8e-53 213.4 379 38.5
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 6.3e-53 213.0 369 39.0
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 6.3e-53 213.0 443 36.8
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.8e-52 211.5 465 39.6
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 1.8e-52 211.5 478 36.2
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.2e-51 208.8 423 38.3
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 2.6e-51 207.6 457 35.0
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.6e-51 207.6 530 35.1
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 3.4e-51 207.2 444 36.9
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 4.5e-51 206.8 444 36.3
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 4.5e-51 206.8 530 34.9
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 1.0e-50 205.7 353 39.9
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 6.5e-50 203.0 329 41.3
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.1e-49 202.2 443 34.1
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.5e-49 201.1 411 37.0
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.0e-47 194.1 321 41.4
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 5.1e-47 193.4 364 36.8
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.1e-46 192.2 473 35.9
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 4.8e-45 186.8 133 69.2
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 2.4e-44 184.5 222 47.3
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 4.1e-44 183.7 419 33.4
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 1.2e-43 182.2 439 35.5
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 8.5e-42 176.0 450 33.8
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.4e-41 175.3 307 39.4
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 5.9e-35 153.3 109 68.8
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 7.7e-35 152.9 203 43.8
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 7.7e-35 152.9 203 43.8
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.2e-34 151.4 423 34.3
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 2.1e-32 144.8 101 68.3
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 4.4e-30 137.1 124 58.9
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 4.5e-27 127.1 408 33.8
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.2e-26 124.8 89 68.5
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 9.4e-25 119.4 121 47.9
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 2.7e-24 117.9 307 37.8
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 3.6e-24 117.5 313 36.7
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 3.4e-22 110.9 132 44.7
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.7e-21 107.5 256 37.5
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.2e-19 102.4 139 43.9
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.6e-19 102.1 77 64.9
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 2.3e-18 98.2 58 81.0
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.5e-14 85.5 96 47.9
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.2e-11 75.9 58 62.1
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 1.0e-10 72.8 66 57.6
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 3.9e-10 70.9 97 40.2
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 5.6e-09 67.0 95 42.1
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 1.2e-08 65.9 107 37.4
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.0e-06 58.5 309 26.2
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.4e-06 57.4 61 44.3


User provided reference genes

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