Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02689 Striga asiatica HOM05D000098 ORTHO05D000546 5.2e-51 204.1 107 100.0
Nitab4.5_0007069g0030 Nicotiana tabacum HOM05D000098 ORTHO05D000546 6.0e-15 84.3 77 64.9
Peaxi162Scf00332g00771 Petunia axillaris HOM05D000098 ORTHO05D000546 1.1e-13 80.1 92 54.3
MD17G1211000 Malus domestica HOM05D000098 ORTHO05D000546 3.3e-13 78.6 120 44.2
PGSC0003DMG400000620 Solanum tuberosum HOM05D000098 ORTHO05D000546 3.3e-13 78.6 110 45.5
MD17G1211100 Malus domestica HOM05D000098 ORTHO05D000546 5.6e-13 77.8 117 46.2
Nitab4.5_0007793g0040 Nicotiana tabacum HOM05D000098 ORTHO05D000546 5.6e-13 77.8 79 59.5
Migut.I00768 Erythranthe guttata HOM05D000098 ORTHO05D000546 7.4e-13 77.4 108 48.1
Sopen03g035600 Solanum pennellii HOM05D000098 ORTHO05D000546 7.4e-13 77.4 107 48.6
Nitab4.5_0011590g0010 Nicotiana tabacum HOM05D000771 ORTHO05D001963 9.6e-13 77.0 111 50.5
Rhsim08G0213300 Rhododendron simsii HOM05D000098 ORTHO05D000546 2.1e-12 75.9 119 46.2
Nitab4.5_0007793g0050 Nicotiana tabacum HOM05D000771 ORTHO05D001963 2.8e-12 75.5 74 60.8
Hma1.2p1_1144F.1_g261250 Hydrangea macrophylla HOM05D000098 ORTHO05D000546 3.7e-12 75.1 116 46.6
Manes.04G113000 Manihot esculenta HOM05D000098 ORTHO05D000546 3.7e-12 75.1 116 43.1
COL.COLO4_12961 Corchorus olitorius HOM05D000098 ORTHO05D000546 2.4e-11 72.4 114 43.0
Duzib160G0726 Durio zibethinus HOM05D000098 ORTHO05D000546 2.4e-11 72.4 109 43.1
Peaxi162Scf00019g00010 Petunia axillaris HOM05D000098 ORTHO05D000546 2.4e-11 72.4 114 46.5
Solyc03g116690.3 Solanum lycopersicum HOM05D000098 ORTHO05D000546 3.1e-11 72.0 107 44.9
Actinidia01748 Actinidia chinensis HOM05D000098 ORTHO05D000546 9.0e-11 70.5 112 44.6
Nitab4.5_0007069g0040 Nicotiana tabacum HOM05D000098 ORTHO05D000546 1.2e-10 70.1 64 54.7
MD17G1210900 Malus domestica HOM05D000098 ORTHO05D000546 1.5e-10 69.7 121 43.8
Aqoxy7G02268 Aquilegia oxysepala HOM05D000098 ORTHO05D000546 2.6e-10 68.9 42 69.0
Ciclev10027232m.g Citrus clementina HOM05D000098 ORTHO05D000546 2.6e-10 68.9 65 53.8
Lj5A72T18 Lonicera japonica HOM05D000098 ORTHO05D000546 2.6e-10 68.9 105 46.7
Prupe.3G112300 Prunus persica HOM05D000098 ORTHO05D000546 2.6e-10 68.9 70 50.0
Gohir.A05G126500 Gossypium hirsutum HOM05D000098 ORTHO05D000546 3.4e-10 68.6 110 43.6
Haze_16552 Corylus avellana HOM05D000098 ORTHO05D000546 4.5e-10 68.2 112 42.0
MD17G1211200 Malus domestica HOM05D000098 ORTHO05D000546 4.5e-10 68.2 121 43.0
Nitab4.5_0003283g0030 Nicotiana tabacum HOM05D000098 ORTHO05D000546 4.5e-10 68.2 83 47.0
PGR102G2638 Punica granatum HOM05D000098 ORTHO05D000546 4.5e-10 68.2 106 42.5
Peaxi162Scf00744g00346 Petunia axillaris HOM05D000098 ORTHO05D000546 5.8e-10 67.8 117 43.6
CAN.G407.87 Capsicum annuum HOM05D000098 ORTHO05D000546 7.6e-10 67.4 112 42.0
SalBow2G1051 Salvia bowleyana HOM05D000098 ORTHO05D000546 1.0e-09 67.0 108 44.4
FAN14G4536 Fragaria x ananassa HOM05D024838 ORTHO05D029573 1.7e-09 66.2 71 52.1
TWI12G0447 Tripterygium wilfordii HOM05D000098 ORTHO05D000546 1.7e-09 66.2 66 48.5
PGR102G3020 Punica granatum HOM05D000098 ORTHO05D000546 2.2e-09 65.9 102 44.1
TWI12G1150 Tripterygium wilfordii HOM05D000098 ORTHO05D000546 3.8e-09 65.1 104 40.4
Dinv30602 Davidia involucrata HOM05D000098 ORTHO05D000546 4.9e-09 64.7 68 54.4
Actinidia15768 Actinidia chinensis HOM05D000098 ORTHO05D000546 6.5e-09 64.3 77 49.4
FvH4_6g29800 Fragaria vesca HOM05D000098 ORTHO05D000546 6.5e-09 64.3 105 41.9
MD17G1211300 Malus domestica HOM05D000098 ORTHO05D000546 6.5e-09 64.3 120 42.5
Rhsim08G0213500 Rhododendron simsii HOM05D000098 ORTHO05D000546 6.5e-09 64.3 126 39.7
RcHm_v2.0_Chr2g0135581 Rosa chinensis HOM05D000098 ORTHO05D000546 8.4e-09 63.9 105 42.9
Lj5A72T17 Lonicera japonica HOM05D000098 ORTHO05D000546 1.1e-08 63.5 45 62.2
Nitab4.5_0025073g0010 Nicotiana tabacum HOM05D000098 ORTHO05D000546 1.4e-08 63.2 64 53.1
Prupe.3G086500 Prunus persica HOM05D000098 ORTHO05D000546 1.9e-08 62.8 49 61.2
ClCG09G002920 Citrullus lanatus HOM05D000098 ORTHO05D000546 2.5e-08 62.4 102 44.1
Gohir.D05G127400 Gossypium hirsutum HOM05D000098 ORTHO05D000546 2.5e-08 62.4 64 48.4
Actinidia15771 Actinidia chinensis HOM05D000098 ORTHO05D000546 3.2e-08 62.0 120 40.0
CsaV3_7G032360 Cucumis sativus L. HOM05D000098 ORTHO05D000546 3.2e-08 62.0 105 39.0
FvH4_6g29770 Fragaria vesca HOM05D000098 ORTHO05D000546 3.2e-08 62.0 43 58.1
PGR102G1137 Punica granatum HOM05D000098 ORTHO05D000546 3.2e-08 62.0 51 58.8
Potri.001G192100 Populus trichocarpa HOM05D000098 ORTHO05D000546 4.2e-08 61.6 120 40.0
CAN.G407.86 Capsicum annuum HOM05D000098 ORTHO05D000546 5.5e-08 61.2 42 61.9
PGSC0003DMG400000621 Solanum tuberosum HOM05D000098 ORTHO05D000546 5.5e-08 61.2 67 49.3
TAR625G0818 Trochodendron aralioides HOM05D000098 ORTHO05D000546 5.5e-08 61.2 116 38.8
MSTRG.22742 Avicennia marina HOM05D000098 ORTHO05D000546 9.3e-08 60.5 108 43.5
COL.COLO4_35089 Corchorus olitorius HOM05D000098 ORTHO05D000546 9.3e-08 60.5 53 50.9
Glyma.08G212500 Glycine max HOM05D000098 ORTHO05D000546 9.3e-08 60.5 41 65.9
Gorai.009G131500 Gossypium raimondii HOM05D000098 ORTHO05D000546 9.3e-08 60.5 42 57.1
Sopen03g035610 Solanum pennellii HOM05D000098 ORTHO05D000546 9.3e-08 60.5 65 47.7
Oeu042098.1 Olea europaea HOM05D000098 ORTHO05D000546 1.2e-07 60.1 116 40.5
PGR102G1264 Punica granatum HOM05D000098 ORTHO05D000546 1.2e-07 60.1 40 62.5
QL05p029690 Quercus lobata HOM05D000098 ORTHO05D000546 1.2e-07 60.1 119 37.8
TAR625G1110 Trochodendron aralioides HOM05D000098 ORTHO05D000546 1.2e-07 60.1 55 50.9
Ca_06928_v3 Cicer arietinum L. HOM05D000098 ORTHO05D000546 1.6e-07 59.7 54 50.0
Manes.11G056400 Manihot esculenta HOM05D000098 ORTHO05D000546 1.6e-07 59.7 122 40.2
CiPaw.01G247400 Carya illinoinensis HOM05D000098 ORTHO05D000546 2.1e-07 59.3 70 48.6
Lsat_1_v5_gn_7_43280 Lactuca sativa HOM05D000098 ORTHO05D000546 2.1e-07 59.3 51 54.9
MD03G1063600 Malus domestica HOM05D000041 ORTHO05D000061 2.1e-07 59.3 45 55.6
Solyc03g116700.4 Solanum lycopersicum HOM05D000098 ORTHO05D000546 2.1e-07 59.3 65 46.2
Cfa001965 Carpinus fangiana HOM05D000098 ORTHO05D000546 2.7e-07 58.9 109 39.4
VMungo1215G2554 Vigna mungo HOM05D000098 ORTHO05D000546 2.7e-07 58.9 66 40.9
Atru.chr1.2975 Acer truncatum HOM05D000098 ORTHO05D000546 3.5e-07 58.5 71 50.7
CsaV3_2G003010 Cucumis sativus L. HOM05D000098 ORTHO05D000546 3.5e-07 58.5 52 50.0
Phvul.010G155900 Phaseolus vulgaris HOM05D000098 ORTHO05D000546 3.5e-07 58.5 45 60.0
RcHm_v2.0_Chr2g0135591 Rosa chinensis HOM05D000098 ORTHO05D000546 3.5e-07 58.5 125 37.6
ClCG11G003190 Citrullus lanatus HOM05D000098 ORTHO05D000546 4.6e-07 58.2 54 48.1
Dinv36501 Davidia involucrata HOM05D000098 ORTHO05D000546 4.6e-07 58.2 49 51.0
HanXRQChr12g0356711 Helianthus annuus HOM05D000098 ORTHO05D000546 4.6e-07 58.2 41 61.0
Oeu031007.1 Olea europaea HOM05D000098 ORTHO05D000546 4.6e-07 58.2 51 54.9
Peaxi162Scf00891g00120 Petunia axillaris HOM05D000098 ORTHO05D000546 4.6e-07 58.2 56 50.0
vmacro18993 Vaccinium macrocarpon HOM05D000098 ORTHO05D000546 4.6e-07 58.2 49 55.1
Cc04_g04350 Coffea canephora HOM05D000098 ORTHO05D000546 6.0e-07 57.8 121 36.4
FAN09G0538 Fragaria x ananassa HOM05D000098 ORTHO05D000546 6.0e-07 57.8 51 54.9
TAR625G0390 Trochodendron aralioides HOM05D000098 ORTHO05D000546 6.0e-07 57.8 105 37.1
Dinv36500 Davidia involucrata HOM05D000098 ORTHO05D000546 7.9e-07 57.4 53 52.8
Glyma.13G158200 Glycine max HOM05D000098 ORTHO05D000546 7.9e-07 57.4 48 52.1
Lsat_1_v5_gn_5_95221 Lactuca sativa HOM05D000098 ORTHO05D000546 7.9e-07 57.4 53 52.8
Cfa001966 Carpinus fangiana HOM05D000098 ORTHO05D000546 1.0e-06 57.0 50 56.0
MELO3C023422.2 Cucumis melo HOM05D000098 ORTHO05D000546 1.0e-06 57.0 105 37.1
Dinv36499 Davidia involucrata HOM05D000098 ORTHO05D000546 1.0e-06 57.0 57 49.1
Lsat_1_v5_gn_5_96241 Lactuca sativa HOM05D000098 ORTHO05D000546 1.0e-06 57.0 52 51.9
Solyc07g150104.1 Solanum lycopersicum HOM05D000098 ORTHO05D000546 1.0e-06 57.0 78 38.5
SGA_v2.0_scaffold5G02691 Striga asiatica HOM05D000098 ORTHO05D000546 1.0e-06 57.0 113 38.9
arahy.Tifrunner.gnm1.ann1.GQK0BY Arachis hypogaea HOM05D000098 ORTHO05D000546 1.3e-06 56.6 57 52.6
arahy.Tifrunner.gnm1.ann1.HG4UM5 Arachis hypogaea HOM05D000098 ORTHO05D000546 1.3e-06 56.6 57 52.6
Nitab4.5_0000028g0200 Nicotiana tabacum HOM05D000098 ORTHO05D000546 1.3e-06 56.6 51 54.9
THA.LOC104810613 Tarenaya hassleriana HOM05D000098 ORTHO05D000546 1.3e-06 56.6 38 60.5
TWI63G0803 Tripterygium wilfordii HOM05D000098 ORTHO05D000546 1.3e-06 56.6 51 52.9
Cfa001969 Carpinus fangiana HOM05D000098 ORTHO05D000546 1.8e-06 56.2 52 53.8
CDE02G1241 Ceratophyllum demersum HOM05D000098 ORTHO05D000546 1.8e-06 56.2 49 53.1
Haze_16553 Corylus avellana HOM05D000098 ORTHO05D000546 1.8e-06 56.2 41 56.1
MELO3C004454.2 Cucumis melo HOM05D000098 ORTHO05D000546 1.8e-06 56.2 62 48.4
MD02G1029200 Malus domestica HOM05D000098 ORTHO05D000546 1.8e-06 56.2 53 49.1
Phvul.003G166700 Phaseolus vulgaris HOM05D000098 ORTHO05D000546 1.8e-06 56.2 45 48.9
PGR102G0467 Punica granatum HOM05D000098 ORTHO05D000546 1.8e-06 56.2 52 50.0
ECA234G0896 Erigeron canadensis HOM05D000098 ORTHO05D000546 2.3e-06 55.8 40 52.5
ECA240G1880 Erigeron canadensis HOM05D000098 ORTHO05D000546 2.3e-06 55.8 49 55.1
PGR102G2984 Punica granatum HOM05D000098 ORTHO05D000546 2.3e-06 55.8 53 49.1
Solyc07g008140.3 Solanum lycopersicum HOM05D000098 ORTHO05D000546 2.3e-06 55.8 37 59.5
Sopen07g004010 Solanum pennellii HOM05D000098 ORTHO05D000546 2.3e-06 55.8 37 59.5
PGSC0003DMG401030920 Solanum tuberosum HOM05D000098 ORTHO05D000546 2.3e-06 55.8 37 59.5
GSVIVG01017332001 Vitis vinifera HOM05D000098 ORTHO05D000546 2.3e-06 55.8 43 53.5
CiPaw.03G246100 Carya illinoinensis HOM05D000098 ORTHO05D000546 3.0e-06 55.5 44 50.0
Dinv36502 Davidia involucrata HOM05D000098 ORTHO05D000546 3.0e-06 55.5 45 53.3
Lsat_1_v5_gn_6_44501 Lactuca sativa HOM05D000098 ORTHO05D000546 3.0e-06 55.5 45 55.6
Nitab4.5_0000028g0180 Nicotiana tabacum HOM05D000098 ORTHO05D000546 3.0e-06 55.5 37 59.5
Nitab4.5_0004833g0020 Nicotiana tabacum HOM05D000098 ORTHO05D000546 3.0e-06 55.5 37 59.5
Phvul.003G166800 Phaseolus vulgaris HOM05D000098 ORTHO05D000546 3.0e-06 55.5 49 44.9
Psat4g037160 Pisum sativum HOM05D000098 ORTHO05D000546 3.0e-06 55.5 53 47.2
COL.COLO4_35090 Corchorus olitorius HOM05D000098 ORTHO05D000546 3.9e-06 55.1 72 43.1
ECA240G0512 Erigeron canadensis HOM05D000098 ORTHO05D000546 3.9e-06 55.1 44 52.3
Lsat_1_v5_gn_7_43260 Lactuca sativa HOM05D000098 ORTHO05D000546 3.9e-06 55.1 67 46.3
Thecc.09G129300 Theobroma cacao HOM05D000098 ORTHO05D000546 3.9e-06 55.1 41 51.2
CiPaw.10G119600 Carya illinoinensis HOM05D000098 ORTHO05D000546 5.1e-06 54.7 53 54.7
AUR62013332 Chenopodium quinoa HOM05D000098 ORTHO05D000546 5.1e-06 54.7 115 37.4
Hma1.2p1_0931F.1_g238185 Hydrangea macrophylla HOM05D000098 ORTHO05D000546 5.1e-06 54.7 52 46.2
Oeu031006.1 Olea europaea HOM05D000098 ORTHO05D000546 5.1e-06 54.7 37 59.5
Phvul.003G165800 Phaseolus vulgaris HOM05D000098 ORTHO05D000546 5.1e-06 54.7 43 48.8
Sed0017258 Sechium edule HOM05D000098 ORTHO05D000546 5.1e-06 54.7 48 52.1
CSS0008049 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000546 6.7e-06 54.3 38 52.6
CSS0012219 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000546 6.7e-06 54.3 37 56.8
CSS0029760 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000546 6.7e-06 54.3 37 56.8
CiPaw.02G157100 Carya illinoinensis HOM05D000098 ORTHO05D000546 6.7e-06 54.3 36 58.3
Ca_21030_v3 Cicer arietinum L. HOM05D000098 ORTHO05D000546 6.7e-06 54.3 52 50.0
Cc06_g08240 Coffea canephora HOM05D000098 ORTHO05D000546 6.7e-06 54.3 43 53.5
COL.COLO4_12962 Corchorus olitorius HOM05D000098 ORTHO05D000546 6.7e-06 54.3 107 36.4
Haze_25553 Corylus avellana HOM05D000098 ORTHO05D000546 6.7e-06 54.3 41 48.8
CsaV3_7G032380 Cucumis sativus L. HOM05D000098 ORTHO05D000546 6.7e-06 54.3 105 36.2
Dinv36504 Davidia involucrata HOM05D000020 ORTHO05D000543 6.7e-06 54.3 41 53.7
Lsat_1_v5_gn_7_43160 Lactuca sativa HOM05D000098 ORTHO05D000546 6.7e-06 54.3 78 46.2
Peaxi162Scf00891g00125 Petunia axillaris HOM05D000098 ORTHO05D000546 6.7e-06 54.3 37 56.8
GSVIVG01015562001 Vitis vinifera HOM05D000098 ORTHO05D000546 6.7e-06 54.3 36 61.1
Aqoxy1G01575 Aquilegia oxysepala HOM05D000098 ORTHO05D000546 8.7e-06 53.9 57 47.4
Eucgr.C04251 Eucalyptus grandis HOM05D000098 ORTHO05D000546 8.7e-06 53.9 48 43.8
Eucgr.L01304 Eucalyptus grandis HOM05D000098 ORTHO05D000546 8.7e-06 53.9 48 43.8
HanXRQChr10g0315691 Helianthus annuus HOM05D000098 ORTHO05D000546 8.7e-06 53.9 39 56.4
PSO017G0377 Papaver somniferum HOM05D000098 ORTHO05D000546 8.7e-06 53.9 45 57.8
Peaxi162Scf00313g00816 Petunia axillaris HOM05D000098 ORTHO05D000546 8.7e-06 53.9 46 50.0
Peaxi162Scf00313g00822 Petunia axillaris HOM05D000098 ORTHO05D000546 8.7e-06 53.9 38 55.3
Prupe.7G246300 Prunus persica HOM05D000098 ORTHO05D000546 8.7e-06 53.9 33 63.6
QL02p089156 Quercus lobata HOM05D000098 ORTHO05D000546 8.7e-06 53.9 46 54.3
Sed0025625 Sechium edule HOM05D000098 ORTHO05D000546 8.7e-06 53.9 114 37.7
Thecc.06G022700 Theobroma cacao HOM05D000098 ORTHO05D000546 8.7e-06 53.9 107 39.3


User provided reference genes

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