Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.1e-63 245.0 164 100.0
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.2e-30 137.1 119 64.7
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 9.5e-28 127.5 119 62.2
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 4.7e-27 125.2 118 60.2
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.4e-18 97.1 84 61.9
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 4.0e-18 95.5 68 66.2
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 6.8e-18 94.7 100 56.0
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 1.5e-17 93.6 63 68.3
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 2.0e-17 93.2 115 49.6
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 2.0e-17 93.2 53 79.2
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.6e-17 92.8 52 80.8
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 4.4e-17 92.0 126 50.8
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 7.6e-17 91.3 58 72.4
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.3e-16 90.5 58 72.4
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.7e-16 90.1 60 68.3
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 2.9e-16 89.4 62 64.5
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.8e-16 89.0 60 68.3
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 3.8e-16 89.0 121 50.4
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 3.8e-16 89.0 46 84.8
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 4.9e-16 88.6 106 46.2
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 6.4e-16 88.2 53 73.6
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 6.4e-16 88.2 53 73.6
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 6.4e-16 88.2 53 73.6
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 6.4e-16 88.2 105 53.3
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 6.4e-16 88.2 102 51.0
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 8.4e-16 87.8 62 67.7
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.1e-15 87.4 107 47.7
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.1e-15 87.4 115 45.2
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.1e-15 87.4 115 45.2
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.1e-15 87.4 115 45.2
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.1e-15 87.4 97 55.7
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.4e-15 87.0 128 46.1
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.4e-15 87.0 62 66.1
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.9e-15 86.7 110 54.5
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 2.4e-15 86.3 94 52.1
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 2.4e-15 86.3 94 52.1
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 5.4e-15 85.1 119 47.1
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 5.4e-15 85.1 58 74.1
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 5.4e-15 85.1 102 49.0
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 9.2e-15 84.3 60 70.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 9.2e-15 84.3 127 44.9
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 9.2e-15 84.3 126 46.8
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-14 84.0 118 45.8
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.2e-14 84.0 102 51.0
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.6e-14 83.6 126 44.4
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 1.6e-14 83.6 179 39.1
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.1e-14 83.2 58 72.4
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.1e-14 83.2 58 72.4
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 2.1e-14 83.2 108 48.1
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.6e-14 82.0 119 47.1
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 4.6e-14 82.0 98 53.1
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.0e-14 81.6 119 47.1
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 6.0e-14 81.6 112 46.4
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.0e-14 81.6 112 50.9
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 6.0e-14 81.6 94 53.2
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 6.0e-14 81.6 103 47.6
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 7.8e-14 81.3 90 54.4
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 7.8e-14 81.3 47 74.5
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.0e-13 80.9 93 51.6
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.0e-13 80.9 113 49.6
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.0e-13 80.9 110 50.9
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.3e-13 80.5 93 55.9
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 1.7e-13 80.1 104 52.9
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.7e-13 80.1 102 50.0
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.7e-13 80.1 78 59.0
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.3e-13 79.7 49 73.5
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 3.0e-13 79.3 47 76.6
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 3.0e-13 79.3 47 76.6
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.0e-13 79.3 107 48.6
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 3.9e-13 79.0 110 47.3
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 5.1e-13 78.6 53 73.6
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 6.6e-13 78.2 65 66.2
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 6.6e-13 78.2 115 49.6
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 8.7e-13 77.8 93 55.9
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.1e-12 77.4 120 42.5
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.5e-12 77.0 58 67.2
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 1.9e-12 76.6 76 57.9
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 1.9e-12 76.6 86 52.3
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 2.5e-12 76.3 58 69.0
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.5e-12 76.3 59 61.0
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.5e-12 76.3 58 62.1
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.5e-12 76.3 58 62.1
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 2.5e-12 76.3 91 49.5
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 3.3e-12 75.9 107 49.5
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.3e-12 75.5 97 47.4
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.3e-12 75.5 50 74.0
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 9.6e-12 74.3 50 74.0
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.2e-11 73.9 96 50.0
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.2e-11 73.9 105 46.7
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 1.6e-11 73.6 79 53.2
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 3.6e-11 72.4 41 78.0
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 3.6e-11 72.4 47 68.1
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 3.6e-11 72.4 53 67.9
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 6.2e-11 71.6 102 43.1
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 6.2e-11 71.6 51 64.7
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 6.2e-11 71.6 53 67.9
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 8.1e-11 71.2 86 46.5
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.1e-10 70.9 106 45.3
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.1e-10 70.9 40 77.5
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.4e-10 70.5 48 64.6
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 1.8e-10 70.1 93 49.5
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.1e-10 69.3 53 66.0
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 3.1e-10 69.3 51 66.7
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 4.0e-10 68.9 122 43.4
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 4.0e-10 68.9 40 77.5
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 5.2e-10 68.6 78 52.6
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 6.9e-10 68.2 55 60.0
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.2e-09 67.4 47 68.1
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.2e-09 67.4 57 63.2
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 1.2e-09 67.4 35 80.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.5e-09 67.0 104 45.2
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 1.5e-09 67.0 47 63.8
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.5e-09 67.0 83 45.8
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.6e-09 66.2 105 43.8
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.6e-09 66.2 36 75.0
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.6e-09 66.2 36 80.6
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 3.4e-09 65.9 41 73.2
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 3.4e-09 65.9 41 73.2
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 3.4e-09 65.9 110 45.5
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 3.4e-09 65.9 40 70.0
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 3.4e-09 65.9 40 72.5
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.3e-08 63.9 108 44.4
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.7e-08 63.5 125 40.8
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 2.2e-08 63.2 35 74.3
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 2.9e-08 62.8 45 60.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 3.8e-08 62.4 40 65.0
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 6.4e-08 61.6 35 68.6
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 1.2e-06 57.4 52 51.9


User provided reference genes

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