Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 9.0e-84 313.5 157 100.0
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 4.9e-82 307.8 158 98.7
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.2e-67 260.0 156 80.8
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 2.0e-67 259.2 153 82.4
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 1.0e-66 256.9 159 78.0
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 1.9e-65 252.7 152 78.9
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 9.3e-65 250.4 159 76.7
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 9.3e-65 250.4 159 76.7
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 9.3e-65 250.4 159 77.4
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 1.2e-64 250.0 160 75.6
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 1.6e-64 249.6 160 76.2
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 1.6e-64 249.6 160 76.2
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.6e-64 249.6 160 76.2
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 2.1e-64 249.2 160 76.2
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 2.7e-64 248.8 159 78.6
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 4.6e-64 248.1 160 75.0
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 6.0e-64 247.7 160 75.0
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 6.0e-64 247.7 159 76.7
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 7.9e-64 247.3 160 76.2
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 1.0e-63 246.9 159 74.8
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.8e-63 246.1 159 74.8
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.3e-63 245.7 156 77.6
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 3.9e-63 245.0 155 74.2
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 5.1e-63 244.6 158 76.6
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 6.7e-63 244.2 159 75.5
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 6.7e-63 244.2 163 72.4
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 6.7e-63 244.2 160 76.2
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 6.7e-63 244.2 156 74.4
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 8.7e-63 243.8 158 77.2
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 8.7e-63 243.8 160 73.1
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 8.7e-63 243.8 159 76.1
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 8.7e-63 243.8 159 74.8
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 8.7e-63 243.8 160 73.8
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 1.1e-62 243.4 156 76.9
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 1.1e-62 243.4 157 75.8
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.1e-62 243.4 156 76.9
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 1.9e-62 242.7 160 75.0
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 3.3e-62 241.9 154 79.2
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 3.3e-62 241.9 160 74.4
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 4.3e-62 241.5 156 73.7
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 4.3e-62 241.5 156 73.7
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.3e-62 241.5 156 76.3
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 4.3e-62 241.5 156 76.3
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.3e-62 241.5 141 83.0
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 5.7e-62 241.1 160 72.5
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.7e-62 241.1 159 76.1
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 7.4e-62 240.7 155 73.5
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 7.4e-62 240.7 155 75.5
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 7.4e-62 240.7 161 73.9
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 9.7e-62 240.4 165 73.3
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 9.7e-62 240.4 159 76.1
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 9.7e-62 240.4 160 73.8
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 1.6e-61 239.6 155 76.1
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 2.1e-61 239.2 156 74.4
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 2.1e-61 239.2 149 76.5
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.1e-61 239.2 155 72.9
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.1e-61 239.2 155 75.5
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 2.1e-61 239.2 160 74.4
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 2.8e-61 238.8 153 76.5
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.8e-61 238.8 155 75.5
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 3.7e-61 238.4 160 70.0
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 6.3e-61 237.7 154 76.0
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 1.1e-60 236.9 155 72.9
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 1.1e-60 236.9 154 76.6
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 1.4e-60 236.5 160 71.9
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 1.8e-60 236.1 153 75.2
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 1.8e-60 236.1 161 69.6
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 1.8e-60 236.1 159 73.6
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 1.8e-60 236.1 155 76.1
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 2.4e-60 235.7 155 74.8
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 3.1e-60 235.3 155 72.9
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 3.1e-60 235.3 159 74.2
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 6.9e-60 234.2 150 73.3
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 9.0e-60 233.8 155 71.6
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 1.5e-59 233.0 146 74.0
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 2.0e-59 232.6 151 74.2
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 2.0e-59 232.6 160 72.5
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 2.0e-59 232.6 160 71.9
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 3.4e-59 231.9 179 66.5
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 4.5e-59 231.5 146 71.9
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 5.9e-59 231.1 161 66.5
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 5.9e-59 231.1 151 72.8
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 7.6e-59 230.7 155 73.5
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.3e-58 229.9 151 72.2
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 2.9e-58 228.8 141 78.7
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 2.9e-58 228.8 159 73.0
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 5.0e-58 228.0 161 71.4
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 5.0e-58 228.0 165 68.5
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 5.0e-58 228.0 138 76.1
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 5.0e-58 228.0 159 69.2
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 6.5e-58 227.6 177 65.5
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 3.2e-57 225.3 155 73.5
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 3.2e-57 225.3 160 71.9
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 4.2e-57 224.9 141 76.6
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 4.2e-57 224.9 145 75.2
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 5.5e-57 224.6 161 64.0
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 5.5e-57 224.6 160 70.6
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 9.3e-57 223.8 147 73.5
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.3e-55 219.9 150 71.3
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 2.5e-54 215.7 198 59.1
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 2.8e-53 212.2 161 65.8
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 2.4e-52 209.1 160 63.8
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 9.1e-52 207.2 160 63.1
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 3.4e-51 205.3 160 62.5
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 1.0e-50 203.8 161 64.0
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.3e-50 203.4 160 62.5
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.2e-50 202.6 160 61.2
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 8.5e-50 200.7 161 63.4
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 1.1e-49 200.3 158 61.4
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 1.1e-49 200.3 158 61.4
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 1.9e-49 199.5 141 66.0
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 1.9e-49 199.5 157 64.3
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 4.2e-49 198.4 141 65.2
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.2e-48 196.8 141 64.5
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.6e-48 196.4 160 60.0
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.6e-48 196.4 160 60.0
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 2.1e-48 196.1 160 59.4
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 2.1e-48 196.1 151 62.3
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 2.7e-48 195.7 159 59.1
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.5e-46 189.9 127 73.2
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.2e-45 186.0 132 66.7
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 6.3e-45 184.5 155 63.2
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 5.0e-42 174.9 120 65.0
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 9.4e-41 170.6 112 72.3
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 1.0e-34 150.6 121 61.2
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 2.2e-34 149.4 93 78.5
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 1.5e-33 146.7 150 50.0
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 6.1e-32 141.4 148 48.0
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.8e-31 139.8 93 69.9
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 9.7e-30 134.0 98 68.4
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 1.8e-28 129.8 154 46.8
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 2.7e-27 125.9 87 69.0
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 2.7e-24 115.9 77 68.8
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 6.3e-21 104.8 122 44.3
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 8.3e-21 104.4 122 45.1
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 2.4e-12 76.3 47 72.3
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.2e-11 73.9 50 74.0
Ca_29159_v3 Cicer arietinum L. HOM05D005761 ORTHO05D147516 5.8e-06 55.1 98 30.6


User provided reference genes

Program Settings