Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 3.7e-257 891.0 422 100.0
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 5.9e-215 750.7 446 80.0
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 3.6e-212 741.5 446 79.8
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 6.1e-212 740.7 443 82.2
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.7e-206 722.6 446 77.6
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.3e-197 691.8 436 74.8
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 7.3e-197 690.6 436 74.5
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 7.3e-197 690.6 436 74.8
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.6e-196 689.5 446 74.4
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 2.3e-195 685.6 513 66.9
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 2.3e-195 685.6 436 74.5
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 1.5e-194 682.9 439 74.7
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.2e-193 679.1 445 72.8
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.2e-191 673.3 436 72.9
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.0e-191 672.5 434 74.0
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.1e-189 666.8 436 73.9
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.9e-189 666.0 439 73.1
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.2e-188 663.3 445 72.1
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 2.1e-188 662.5 440 73.4
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.1e-187 660.2 437 73.0
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 1.9e-184 649.4 436 70.4
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.2e-183 646.7 437 71.6
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 2.0e-183 646.0 437 70.9
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.7e-183 645.6 442 71.0
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 4.6e-183 644.8 440 70.2
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.3e-182 643.3 444 70.3
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 5.0e-182 641.3 444 70.3
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 8.6e-182 640.6 441 71.7
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.1e-181 640.2 444 70.3
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.5e-181 639.8 436 71.1
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 7.3e-181 637.5 440 70.7
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.2e-180 636.7 442 71.0
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.3e-179 632.5 443 69.1
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 6.8e-179 630.9 440 69.5
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 2.6e-178 629.0 448 69.0
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 2.6e-178 629.0 442 68.3
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.7e-177 626.3 441 67.6
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 2.2e-177 625.9 436 68.1
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 6.4e-177 624.4 437 69.8
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 8.3e-177 624.0 440 68.2
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 8.3e-177 624.0 433 67.9
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.1e-176 623.6 431 69.6
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.4e-176 622.5 460 67.0
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 2.4e-176 622.5 440 70.5
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.2e-176 622.1 445 69.7
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 1.2e-175 620.2 444 68.7
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.2e-175 620.2 434 71.2
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.6e-175 619.8 446 68.8
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 2.1e-175 619.4 442 68.8
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 2.7e-175 619.0 446 67.7
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.7e-175 619.0 439 67.2
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 4.6e-175 618.2 444 68.9
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 4.6e-175 618.2 444 68.9
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 6.0e-175 617.8 443 68.4
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 7.8e-175 617.5 427 68.4
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 7.8e-175 617.5 389 73.0
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 5.1e-174 614.8 446 68.2
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 6.6e-174 614.4 444 67.1
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 6.6e-174 614.4 429 69.0
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 6.6e-174 614.4 443 68.8
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 6.6e-174 614.4 444 67.3
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.1e-173 613.6 446 67.0
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.5e-173 613.2 446 66.8
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 2.5e-173 612.5 444 67.3
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 3.3e-173 612.1 444 67.8
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.3e-173 612.1 442 68.6
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 4.3e-173 611.7 446 66.4
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 5.6e-173 611.3 451 67.4
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 7.3e-173 610.9 449 66.8
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 9.5e-173 610.5 420 67.9
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 1.2e-172 610.1 446 66.1
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 1.2e-172 610.1 446 65.7
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.2e-172 610.1 446 66.6
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.6e-172 609.8 442 68.1
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 2.8e-172 609.0 453 67.3
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.8e-172 609.0 451 66.7
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 3.6e-172 608.6 455 66.2
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 4.7e-172 608.2 446 66.8
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 8.1e-172 607.4 446 66.8
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.4e-171 606.7 455 66.6
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 2.4e-171 605.9 443 67.7
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 2.4e-171 605.9 446 66.4
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.4e-171 605.9 446 67.5
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 4.0e-171 605.1 445 66.5
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 5.2e-171 604.7 442 68.1
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.5e-170 603.2 367 76.6
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 1.5e-170 603.2 456 66.2
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.0e-170 602.8 455 66.2
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 3.4e-170 602.1 367 76.6
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 4.4e-170 601.7 446 66.6
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 4.4e-170 601.7 445 66.3
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 4.4e-170 601.7 451 65.9
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 4.4e-170 601.7 441 66.9
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 7.6e-170 600.9 443 66.6
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.7e-169 599.7 444 66.2
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.7e-169 599.7 443 67.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 4.9e-169 598.2 447 65.1
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 8.4e-169 597.4 442 67.0
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.4e-168 595.9 440 66.8
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 2.4e-168 595.9 445 66.7
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 4.1e-168 595.1 438 66.7
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 4.1e-168 595.1 452 66.2
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 4.1e-168 595.1 438 67.6
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 4.1e-168 595.1 479 63.5
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 7.1e-168 594.3 452 65.3
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.2e-167 593.6 444 65.5
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 2.1e-167 592.8 407 69.3
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 2.3e-166 589.3 446 66.1
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 5.1e-166 588.2 439 66.5
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 6.6e-166 587.8 442 66.5
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 4.3e-165 585.1 437 64.5
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 4.3e-165 585.1 440 63.2
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.1e-164 582.8 432 66.9
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 1.7e-158 563.1 378 70.9
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 7.3e-157 557.8 392 67.6
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 1.3e-153 547.0 444 62.6
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 9.3e-152 540.8 323 78.0
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.7e-151 539.3 454 60.4
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 1.5e-149 533.5 414 62.1
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.6e-148 530.0 345 73.3
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 3.7e-148 528.9 323 76.2
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 6.2e-140 501.5 337 68.0
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 4.6e-135 485.3 346 71.1
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 4.6e-135 485.3 290 77.6
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 4.3e-133 478.8 290 76.2
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.8e-131 473.4 290 75.5
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.5e-130 468.8 396 61.9
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.3e-125 452.6 335 60.6
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 1.0e-121 441.0 291 69.8
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 9.7e-117 424.5 268 75.4
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 7.0e-115 418.3 286 69.9
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 3.4e-114 416.0 289 72.7
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.5e-106 389.4 322 61.8
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 2.9e-105 386.3 337 53.1
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.7e-100 370.5 286 60.5
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.2e-96 356.3 345 47.8
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.6e-89 331.6 278 63.3
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.0e-86 324.7 322 49.4
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.5e-77 294.3 332 43.7
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 2.1e-63 247.3 145 77.9
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.2e-60 237.3 171 67.8
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.9e-52 209.5 119 77.3
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.1e-51 208.4 119 79.8
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.6e-50 204.5 116 79.3
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.5e-42 176.8 129 62.8
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.1e-31 141.0 85 75.3
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.2e-31 139.4 85 74.1
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 3.1e-30 137.1 127 56.7
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 1.1e-27 128.6 101 63.4
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.4e-22 110.9 73 71.2
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 9.3e-19 99.0 114 47.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.7e-10 70.9 68 58.8
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 1.4e-06 58.5 129 34.9


User provided reference genes

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