Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.6e-249 865.5 410 100.0
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 7.6e-151 537.7 421 62.2
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 7.4e-146 521.2 420 63.3
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 1.4e-141 506.9 414 61.6
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 8.0e-124 448.0 426 53.1
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 1.4e-123 447.2 457 51.6
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.4e-123 447.2 418 54.8
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 5.2e-123 445.3 438 51.6
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 8.8e-123 444.5 418 54.5
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 3.3e-122 442.6 418 54.5
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.3e-121 440.7 438 50.5
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 6.3e-121 438.3 413 52.1
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.1e-117 427.6 456 48.5
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.1e-117 427.6 408 52.5
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 7.2e-117 424.9 470 50.6
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 2.7e-116 422.9 431 51.5
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 2.7e-116 422.9 453 50.3
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.7e-116 422.2 446 49.8
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 4.7e-116 422.2 445 48.8
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 6.1e-116 421.8 452 50.0
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 8.0e-116 421.4 446 49.6
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.0e-115 419.1 450 49.1
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 5.2e-115 418.7 457 50.1
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 2.6e-114 416.4 431 51.0
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.4e-114 416.0 450 48.7
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.3e-113 414.1 414 51.0
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.7e-113 413.7 450 48.2
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 2.2e-113 413.3 436 50.7
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.8e-113 412.9 447 48.8
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 2.8e-113 412.9 464 50.2
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 8.3e-113 411.4 421 49.6
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.1e-112 409.5 409 51.1
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.2e-111 407.5 408 52.2
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.6e-111 407.1 459 47.9
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 2.7e-111 406.4 483 46.8
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.3e-110 404.1 457 48.1
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 1.3e-110 404.1 464 47.0
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 2.9e-110 402.9 452 47.1
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 8.5e-110 401.4 411 50.4
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 4.2e-109 399.1 447 48.5
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 7.2e-109 398.3 447 47.9
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.2e-108 397.5 449 48.3
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.2e-108 397.5 446 48.4
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.2e-108 397.5 446 48.4
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 2.7e-108 396.4 443 46.7
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 1.0e-107 394.4 332 56.3
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.4e-107 394.0 427 50.4
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 1.8e-107 393.7 464 46.6
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.2e-106 391.0 432 47.7
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.2e-106 391.0 432 47.7
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 1.5e-106 390.6 442 46.6
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 2.2e-105 386.7 419 48.2
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 8.3e-105 384.8 416 50.0
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 1.8e-104 383.6 423 47.5
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 7.0e-104 381.7 418 48.3
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 9.1e-104 381.3 356 54.5
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 9.1e-104 381.3 418 48.3
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 1.6e-103 380.6 359 54.0
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.7e-103 379.8 442 47.1
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.7e-103 379.8 442 46.2
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 3.5e-103 379.4 442 46.6
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 4.5e-103 379.0 445 46.5
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.0e-102 377.9 407 48.9
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.5e-101 374.0 361 53.2
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 1.5e-101 374.0 455 45.5
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 2.5e-101 373.2 453 45.3
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 2.5e-101 373.2 426 48.4
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 3.6e-100 369.4 410 48.0
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 2.3e-99 366.7 431 48.3
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 2.3e-99 366.7 454 43.6
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 2.3e-99 366.7 425 46.1
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 3.0e-99 366.3 338 55.0
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 6.8e-99 365.2 421 46.1
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.0e-98 363.6 411 47.2
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 2.0e-98 363.6 432 46.3
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 2.2e-97 360.1 401 48.1
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 4.1e-96 355.9 411 46.5
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 9.2e-96 354.8 411 46.5
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 9.2e-96 354.8 406 47.3
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.7e-95 353.2 319 55.5
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 3.9e-94 349.4 426 45.5
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 4.3e-93 345.9 352 51.1
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 3.6e-92 342.8 427 45.9
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.8e-91 340.5 319 52.7
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 3.1e-91 339.7 425 46.4
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 4.0e-91 339.3 384 48.2
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 6.8e-91 338.6 424 45.3
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.2e-90 337.8 475 39.6
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 3.4e-90 336.3 425 45.9
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 3.4e-90 336.3 423 44.9
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 2.2e-89 333.6 421 45.6
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 8.3e-89 331.6 423 45.4
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 7.0e-88 328.6 424 44.8
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 5.0e-86 322.4 422 44.1
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 2.5e-85 320.1 421 43.5
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.9e-81 306.6 431 44.3
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.2e-79 301.2 294 52.7
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.3e-77 293.1 392 41.6
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 4.3e-77 292.7 508 36.8
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 9.9e-74 281.6 404 40.1
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 5.4e-72 275.8 428 40.7
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 7.1e-72 275.4 547 33.1
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.3e-70 271.2 411 39.2
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 2.1e-68 263.8 327 45.3
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.4e-66 256.1 402 37.6
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.1e-64 251.5 410 37.6
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.4e-64 249.2 420 36.0
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 2.7e-63 246.9 284 48.2
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 3.0e-62 243.4 322 43.5
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 6.4e-57 225.7 491 31.0
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 2.4e-56 223.8 329 40.1
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 7.1e-56 222.2 313 39.9
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.1e-53 214.9 531 29.9
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.9e-48 197.6 245 42.9
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.0e-46 191.8 302 36.8
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 5.1e-46 189.5 353 36.8
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.9e-45 187.6 238 42.9
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 2.4e-43 180.6 157 54.8
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.3e-38 164.9 467 28.3
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 6.7e-38 162.5 190 43.7
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.7e-38 162.2 209 42.1
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 1.1e-37 161.8 174 48.9
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.3e-37 159.8 190 42.6
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 9.6e-37 158.7 134 54.5
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 3.0e-30 137.1 175 41.1
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 8.7e-30 135.6 263 34.6
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.9e-26 122.9 190 35.3
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.6e-23 114.8 118 49.2
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 6.7e-22 109.4 98 53.1
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.3e-17 95.1 152 39.5
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.1e-11 75.5 64 54.7
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 2.0e-10 71.2 54 63.0
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 1.9e-08 64.7 52 50.0
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 9.4e-08 62.4 44 63.6
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 4.0e-06 57.0 56 46.4


User provided reference genes

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