Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold59G20745 Striga asiatica HOM05D002433 ORTHO05D019117 6.1e-101 370.9 201 100.0
SGA_v2.0_scaffold52G18991 Striga asiatica HOM05D002433 ORTHO05D019117 3.3e-38 162.5 91 91.2
SGA_v2.0_scaffold12G06067 Striga asiatica HOM05D002433 ORTHO05D019117 1.3e-34 150.6 92 85.9
SGA_v2.0_scaffold59G20627 Striga asiatica HOM05D002433 ORTHO05D019117 3.2e-33 146.0 95 82.1
SGA_v2.0_scaffold60G20923 Striga asiatica HOM05D002433 ORTHO05D019117 4.3e-30 135.6 73 91.8
SGA_v2.0_scaffold122G33349 Striga asiatica HOM05D002433 ORTHO05D003234 1.9e-17 93.6 57 82.5
SGA_v2.0_scaffold71G23836 Striga asiatica HOM05D002433 ORTHO05D003234 5.1e-15 85.5 64 76.6
Cc04_g01530 Coffea canephora HOM05D002433 ORTHO05D003234 1.1e-14 84.3 64 71.9
MSTRG.10967 Avicennia marina HOM05D002433 ORTHO05D003234 2.5e-14 83.2 78 56.4
SGA_v2.0_scaffold51G18654 Striga asiatica HOM05D002433 ORTHO05D019117 7.3e-14 81.6 51 76.5
MSTRG.22558 Avicennia marina HOM05D002433 ORTHO05D003234 3.6e-13 79.3 79 57.0
Oeu007570.1 Olea europaea HOM05D002433 ORTHO05D003234 3.6e-13 79.3 57 70.2
Dinv30368 Davidia involucrata HOM05D002433 ORTHO05D003234 4.8e-13 79.0 51 76.5
Nn6g35561 Nelumbo nucifera HOM05D002433 ORTHO05D003234 4.8e-13 79.0 81 55.6
Oeu058714.2 Olea europaea HOM05D002433 ORTHO05D003234 6.2e-13 78.6 70 62.9
Migut.I01056 Erythranthe guttata HOM05D002433 ORTHO05D003234 1.4e-12 77.4 89 51.7
Nn8g38753 Nelumbo nucifera HOM05D002433 ORTHO05D003234 1.4e-12 77.4 57 71.9
SGA_v2.0_scaffold62G21420 Striga asiatica HOM05D000133 ORTHO05D006262 1.4e-12 77.4 51 78.4
Dinv37886 Davidia involucrata HOM05D002433 ORTHO05D003234 1.8e-12 77.0 68 63.2
VMungo1080G1021 Vigna mungo HOM05D002433 ORTHO05D003234 3.1e-12 76.3 60 68.3
Nitab4.5_0002795g0060 Nicotiana tabacum HOM05D002433 ORTHO05D003234 4.0e-12 75.9 64 57.8
CSS0024216 Camellia sinensis var. sinensis HOM05D002433 ORTHO05D003234 5.3e-12 75.5 47 72.3
Aqoxy7G01127 Aquilegia oxysepala HOM05D002433 ORTHO05D003234 6.9e-12 75.1 115 47.8
Actinidia21783 Actinidia chinensis HOM05D002433 ORTHO05D016425 9.0e-12 74.7 53 73.6
TAR623G0996 Trochodendron aralioides HOM05D002433 ORTHO05D003234 1.5e-11 73.9 68 58.8
TAR636G1280 Trochodendron aralioides HOM05D002433 ORTHO05D003234 1.5e-11 73.9 68 58.8
Actinidia32170 Actinidia chinensis HOM05D002433 ORTHO05D003234 2.0e-11 73.6 53 71.7
Hma1.2p1_0291F.1_g115320 Hydrangea macrophylla HOM05D002433 ORTHO05D003234 2.0e-11 73.6 66 62.1
Peaxi162Scf00038g01712 Petunia axillaris HOM05D002433 ORTHO05D003234 2.0e-11 73.6 71 56.3
Nitab4.5_0011681g0010 Nicotiana tabacum HOM05D002433 ORTHO05D003234 3.4e-11 72.8 115 41.7
CSS0008835 Camellia sinensis var. sinensis HOM05D002433 ORTHO05D003234 5.8e-11 72.0 69 60.9
Oeu047968.1 Olea europaea HOM05D002433 ORTHO05D019117 9.9e-11 71.2 63 57.1
Solyc03g121910.1 Solanum lycopersicum HOM05D002433 ORTHO05D003234 1.3e-10 70.9 57 61.4
Sopen03g040730 Solanum pennellii HOM05D002433 ORTHO05D003234 1.3e-10 70.9 57 61.4
Phvul.005G156300 Phaseolus vulgaris HOM05D002433 ORTHO05D003234 1.7e-10 70.5 54 68.5
PGSC0003DMG400002486 Solanum tuberosum HOM05D002433 ORTHO05D003234 1.7e-10 70.5 57 61.4
EL10Ac7g17640 Beta vulgaris HOM05D002433 ORTHO05D003234 2.2e-10 70.1 47 74.5
Cpa.g.sc25.90 Carica papaya HOM05D002433 ORTHO05D003234 2.2e-10 70.1 49 73.5
ECA246G2497 Erigeron canadensis HOM05D002433 ORTHO05D003234 2.9e-10 69.7 75 53.3
Peaxi162Scf00207g01429 Petunia axillaris HOM05D002433 ORTHO05D003234 2.9e-10 69.7 47 68.1
Glyma.13G347100 Glycine max HOM05D002433 ORTHO05D003234 3.8e-10 69.3 66 62.1
Hma1.2p1_0169F.1_g074780 Hydrangea macrophylla HOM05D002433 ORTHO05D003234 3.8e-10 69.3 118 43.2
TPR.G6603 Trifolium pratense HOM05D002433 ORTHO05D003234 3.8e-10 69.3 48 72.9
TAR624G0265 Trochodendron aralioides HOM05D002433 ORTHO05D003234 4.9e-10 68.9 68 58.8
Ca_01229_v3 Cicer arietinum L. HOM05D002433 ORTHO05D003234 6.4e-10 68.6 48 75.0
Lalb_Chr14g0372641 Lupinus albus HOM05D002433 ORTHO05D003234 8.4e-10 68.2 97 48.5
PGR102G1947 Punica granatum HOM05D002433 ORTHO05D003234 8.4e-10 68.2 52 69.2
unitig_62.g23761 Utricularia gibba HOM05D002433 ORTHO05D003234 8.4e-10 68.2 56 60.7
Lsat_1_v5_gn_5_21680 Lactuca sativa HOM05D002433 ORTHO05D003234 1.1e-09 67.8 66 56.1
Medtr2g099510 Medicago truncatula HOM05D002433 ORTHO05D003234 1.1e-09 67.8 46 76.1
CAN.G825.21 Capsicum annuum HOM05D002433 ORTHO05D003234 1.4e-09 67.4 47 66.0
SGA_v2.0_scaffold24G10402 Striga asiatica HOM05D002433 ORTHO05D403451 1.4e-09 67.4 54 68.5
MD15G1212700 Malus domestica HOM05D002433 ORTHO05D003234 1.9e-09 67.0 49 69.4
Solyc06g062840.4 Solanum lycopersicum HOM05D002433 ORTHO05D003234 1.9e-09 67.0 65 60.0
Sopen06g022300 Solanum pennellii HOM05D002433 ORTHO05D003234 1.9e-09 67.0 65 60.0
Aa31LG4G3150 Aethionema arabicum HOM05D002433 ORTHO05D003234 2.4e-09 66.6 78 50.0
Lj9P521T29 Lonicera japonica HOM05D002433 ORTHO05D003234 2.4e-09 66.6 68 58.8
PGSC0003DMG400004886 Solanum tuberosum HOM05D002433 ORTHO05D003234 2.4e-09 66.6 65 60.0
ATR0051G050 Amborella trichopoda HOM05D002433 ORTHO05D003234 3.2e-09 66.2 96 47.9
CDE05G1376 Ceratophyllum demersum HOM05D002433 ORTHO05D003234 3.2e-09 66.2 76 51.3
COL.COLO4_18149 Corchorus olitorius HOM05D002433 ORTHO05D003234 3.2e-09 66.2 71 54.9
Rhsim08G0236700 Rhododendron simsii HOM05D002433 ORTHO05D003234 5.4e-09 65.5 51 68.6
CDE05G0453 Ceratophyllum demersum HOM05D002433 ORTHO05D003234 7.1e-09 65.1 76 52.6
Glyma.15G027000 Glycine max HOM05D002433 ORTHO05D003234 7.1e-09 65.1 57 64.9
Sed0018623 Sechium edule HOM05D002433 ORTHO05D003234 7.1e-09 65.1 106 43.4
Nitab4.5_0007560g0020 Nicotiana tabacum HOM05D002433 ORTHO05D003234 9.3e-09 64.7 65 55.4
Sc02g0004340 Simmondsia chinensis HOM05D002433 ORTHO05D003234 9.3e-09 64.7 48 64.6
arahy.Tifrunner.gnm1.ann1.TTHG3F Arachis hypogaea HOM05D002433 ORTHO05D003234 1.2e-08 64.3 51 68.6
arahy.Tifrunner.gnm1.ann1.ZW77VX Arachis hypogaea HOM05D002433 ORTHO05D003234 1.2e-08 64.3 51 68.6
Carub.0002s1965 Capsella rubella HOM05D002433 ORTHO05D003234 1.6e-08 63.9 73 53.4
Rhsim05G0013800 Rhododendron simsii HOM05D002433 ORTHO05D003234 1.6e-08 63.9 73 47.9
DCAR_007633 Daucus carota HOM05D002433 ORTHO05D003234 2.1e-08 63.5 90 47.8
Manes.16G098600 Manihot esculenta HOM05D002433 ORTHO05D003234 2.1e-08 63.5 73 56.2
unitig_52.g17098 Utricularia gibba HOM05D002433 ORTHO05D003234 2.1e-08 63.5 55 60.0
BcaC04g22857 Brassica carinata HOM05D002433 ORTHO05D003234 3.5e-08 62.8 74 52.7
BolC9t54359H Brassica oleracea HOM05D002433 ORTHO05D003234 3.5e-08 62.8 74 52.7
Haze_15998 Corylus avellana HOM05D002433 ORTHO05D003234 3.5e-08 62.8 50 70.0
TWI32G1360 Tripterygium wilfordii HOM05D002433 ORTHO05D003234 3.5e-08 62.8 105 47.6
Ah.15g092780 Amaranthus hybridus HOM05D002433 ORTHO05D003234 4.6e-08 62.4 40 72.5
CAN.G862.21 Capsicum annuum HOM05D002433 ORTHO05D003234 4.6e-08 62.4 115 40.9
Thhalv10018411m.g Eutrema salsugineum HOM05D002433 ORTHO05D003234 6.0e-08 62.0 74 51.4
Sp5g27850 Schrenkiella parvula HOM05D002433 ORTHO05D003234 7.9e-08 61.6 63 55.6
AL2G32500 Arabidopsis lyrata HOM05D002433 ORTHO05D003234 1.0e-07 61.2 66 57.6
CARHR065720 Cardamine hirsuta HOM05D002433 ORTHO05D003234 1.0e-07 61.2 81 45.7
CsaV3_1G040720 Cucumis sativus L. HOM05D002433 ORTHO05D003234 1.0e-07 61.2 108 43.5
FAN18G0462 Fragaria x ananassa HOM05D002433 ORTHO05D003234 1.0e-07 61.2 64 54.7
vmacro22220 Vaccinium macrocarpon HOM05D002433 ORTHO05D003234 1.0e-07 61.2 50 64.0
CiPaw.01G221400 Carya illinoinensis HOM05D002433 ORTHO05D003234 1.3e-07 60.8 50 68.0
Gohir.D06G073200 Gossypium hirsutum HOM05D002433 ORTHO05D003234 1.3e-07 60.8 67 56.7
CiPaw.02G137400 Carya illinoinensis HOM05D002433 ORTHO05D003234 2.3e-07 60.1 50 68.0
Gohir.A06G074501 Gossypium hirsutum HOM05D002433 ORTHO05D003234 3.0e-07 59.7 109 43.1
QL02p061713 Quercus lobata HOM05D002433 ORTHO05D003234 3.0e-07 59.7 50 62.0
Gohir.A05G032400 Gossypium hirsutum HOM05D002433 ORTHO05D003234 5.1e-07 58.9 49 65.3
Gohir.D05G033800 Gossypium hirsutum HOM05D002433 ORTHO05D003234 5.1e-07 58.9 49 65.3
Gorai.009G034200 Gossypium raimondii HOM05D002433 ORTHO05D003234 5.1e-07 58.9 49 65.3
Gorai.010G085500 Gossypium raimondii HOM05D002433 ORTHO05D003234 5.1e-07 58.9 78 51.3
HanXRQChr12g0359681 Helianthus annuus HOM05D002433 ORTHO05D003234 5.1e-07 58.9 44 65.9
Lalb_Chr12g0199971 Lupinus albus HOM05D002433 ORTHO05D003234 5.1e-07 58.9 89 42.7
Cfa003550 Carpinus fangiana HOM05D002433 ORTHO05D003234 8.7e-07 58.2 100 45.0
Dinv42354 Davidia involucrata HOM05D002433 ORTHO05D003234 8.7e-07 58.2 65 49.2
C09p14550 Brassica napus HOM05D002433 ORTHO05D003234 1.1e-06 57.8 67 52.2
ClCG03G015330 Citrullus lanatus HOM05D002433 ORTHO05D003234 1.1e-06 57.8 85 42.4
Sed0003791 Sechium edule HOM05D002433 ORTHO05D003234 1.1e-06 57.8 68 50.0
A02p18290 Brassica napus HOM05D002433 ORTHO05D003234 1.9e-06 57.0 52 59.6
BolC2t09082H Brassica oleracea HOM05D002433 ORTHO05D003234 1.9e-06 57.0 52 59.6
BraA02t06868Z Brassica rapa HOM05D002433 ORTHO05D003234 1.9e-06 57.0 52 59.6
QL05p009200 Quercus lobata HOM05D002433 ORTHO05D003234 1.9e-06 57.0 52 63.5
Haze_25955 Corylus avellana HOM05D002433 ORTHO05D003234 2.5e-06 56.6 110 40.9
Atru.chr5.2876 Acer truncatum HOM05D002433 ORTHO05D003234 3.3e-06 56.2 43 62.8
CANSAT56G3231 Cannabis sativa HOM05D002433 ORTHO05D003234 3.3e-06 56.2 71 49.3
CANSAT56G3542 Cannabis sativa HOM05D002433 ORTHO05D003234 3.3e-06 56.2 71 49.3
Eucgr.L00040 Eucalyptus grandis HOM05D002433 ORTHO05D019117 3.3e-06 56.2 39 66.7
HanXRQChr02g0031501 Helianthus annuus HOM05D002433 ORTHO05D003234 3.3e-06 56.2 44 63.6
MELO3C016527.2 Cucumis melo HOM05D002433 ORTHO05D016425 4.3e-06 55.8 105 42.9
Duzib168G0291 Durio zibethinus HOM05D002433 ORTHO05D003234 4.3e-06 55.8 110 42.7
Lj3g0023880 Lotus japonicus HOM05D002433 ORTHO05D003234 4.3e-06 55.8 43 67.4
VMungo1215G0297 Vigna mungo HOM05D002433 ORTHO05D003234 4.3e-06 55.8 84 42.9
Aqoxy7G00607 Aquilegia oxysepala HOM05D002433 ORTHO05D003234 5.6e-06 55.5 30 80.0
BcaB05g24778 Brassica carinata HOM05D002433 ORTHO05D003234 5.6e-06 55.5 47 61.7
BcaB07g31612 Brassica carinata HOM05D002433 ORTHO05D003234 5.6e-06 55.5 42 66.7
BcaNung06772 Brassica carinata HOM05D002433 ORTHO05D003234 5.6e-06 55.5 42 66.7
A09p12340 Brassica napus HOM05D002433 ORTHO05D003234 5.6e-06 55.5 42 66.7
BraA09t36878Z Brassica rapa HOM05D002433 ORTHO05D003234 5.6e-06 55.5 42 66.7
Manes.11G022700 Manihot esculenta HOM05D002433 ORTHO05D003234 5.6e-06 55.5 71 47.9
PSO782G3829 Papaver somniferum HOM05D002433 ORTHO05D003234 5.6e-06 55.5 44 54.5
RcHm_v2.0_Chr2g0094161 Rosa chinensis HOM05D002433 ORTHO05D003234 5.6e-06 55.5 47 66.0
Thecc.09G082400 Theobroma cacao HOM05D002433 ORTHO05D003234 5.6e-06 55.5 112 42.9
BcaC03g15421 Brassica carinata HOM05D002433 ORTHO05D003234 7.4e-06 55.1 79 43.0
C02p30320 Brassica napus HOM05D002433 ORTHO05D003234 7.4e-06 55.1 79 43.0
FAN19G0473 Fragaria x ananassa HOM05D002433 ORTHO05D003234 7.4e-06 55.1 75 50.7
Eucgr.C00846 Eucalyptus grandis HOM05D002433 ORTHO05D003234 9.6e-06 54.7 73 46.6


User provided reference genes

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