Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 5.3e-145 517.7 265 100.0
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 2.2e-66 256.5 287 55.4
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 2.9e-66 256.1 303 54.5
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 2.4e-65 253.1 288 54.2
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 9.2e-65 251.1 293 53.9
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 2.6e-59 233.0 301 48.5
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 3.4e-59 232.6 304 51.6
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.4e-57 227.3 299 51.2
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 1.1e-54 217.6 296 48.6
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 3.3e-54 216.1 300 49.0
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 5.6e-54 215.3 297 49.8
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 9.6e-54 214.5 300 47.0
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 4.0e-52 209.1 282 47.9
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.3e-50 204.1 310 48.1
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 2.9e-50 203.0 289 45.0
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 3.8e-50 202.6 288 47.9
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 4.9e-50 202.2 343 43.4
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 8.4e-50 201.4 270 50.7
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 1.1e-49 201.1 288 47.6
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 2.4e-49 199.9 305 44.9
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 3.2e-49 199.5 287 45.6
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 3.2e-49 199.5 283 48.4
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 5.4e-49 198.7 292 46.6
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 7.1e-49 198.4 300 47.3
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 6.0e-48 195.3 304 44.7
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.0e-47 194.5 316 43.7
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.7e-47 193.7 295 45.4
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.9e-47 192.6 289 44.6
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 8.7e-47 191.4 301 43.2
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 1.5e-46 190.7 307 43.6
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 2.5e-46 189.9 300 41.7
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 4.3e-46 189.1 302 45.0
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 4.3e-46 189.1 302 43.4
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 7.3e-46 188.3 310 42.6
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 7.3e-46 188.3 321 40.8
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 9.6e-46 188.0 296 44.9
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 1.3e-45 187.6 310 42.3
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 1.3e-45 187.6 299 45.2
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 1.3e-45 187.6 307 44.0
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 2.8e-45 186.4 296 44.6
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 3.6e-45 186.0 291 43.0
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 4.8e-45 185.7 292 42.8
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 6.2e-45 185.3 305 42.3
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 8.1e-45 184.9 310 41.6
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 1.4e-44 184.1 302 42.4
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 5.3e-44 182.2 306 43.1
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 4.5e-43 179.1 293 43.3
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 5.8e-43 178.7 341 40.8
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 9.9e-43 177.9 319 42.3
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 1.3e-42 177.6 301 47.5
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 1.7e-42 177.2 286 42.3
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.2e-42 176.8 317 41.6
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 2.9e-42 176.4 300 42.7
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 4.9e-42 175.6 307 42.3
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 6.4e-42 175.3 309 41.1
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 6.4e-42 175.3 306 41.8
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 6.4e-42 175.3 320 41.2
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 1.1e-41 174.5 295 42.4
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 2.4e-41 173.3 300 39.7
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 4.2e-41 172.6 302 44.0
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 4.2e-41 172.6 308 41.6
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 7.1e-41 171.8 305 42.3
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 7.1e-41 171.8 310 42.3
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 7.1e-41 171.8 295 40.0
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 9.3e-41 171.4 301 41.2
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 9.3e-41 171.4 305 40.0
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.2e-40 171.0 308 40.3
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 2.7e-40 169.9 307 39.1
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 3.5e-40 169.5 321 39.6
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 4.6e-40 169.1 306 41.5
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 4.6e-40 169.1 299 40.8
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 1.3e-39 167.5 208 47.6
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 3.0e-39 166.4 302 42.4
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 3.9e-39 166.0 307 38.4
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 6.7e-39 165.2 315 39.0
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 6.7e-39 165.2 329 39.2
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 1.1e-38 164.5 288 41.0
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 1.1e-38 164.5 288 41.0
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.1e-38 164.5 316 40.5
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 1.5e-38 164.1 311 39.9
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 3.3e-38 162.9 318 38.4
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 3.3e-38 162.9 308 39.6
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 4.3e-38 162.5 326 40.2
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 5.6e-38 162.2 297 41.4
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 9.6e-38 161.4 308 39.9
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 9.6e-38 161.4 308 39.9
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 9.6e-38 161.4 308 39.9
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 9.6e-38 161.4 263 43.3
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 9.6e-38 161.4 301 40.5
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 1.6e-37 160.6 289 39.8
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 2.8e-37 159.8 300 40.3
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 2.8e-37 159.8 305 39.0
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 3.7e-37 159.5 344 37.8
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.7e-37 159.5 297 40.1
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 6.2e-37 158.7 286 40.9
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 6.2e-37 158.7 278 41.0
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 8.1e-37 158.3 308 39.0
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 8.1e-37 158.3 288 39.6
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.4e-36 157.5 313 39.0
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 1.8e-36 157.1 294 39.8
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 1.8e-36 157.1 294 39.8
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 2.4e-36 156.8 325 36.9
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 3.1e-36 156.4 304 38.8
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 4.0e-36 156.0 307 36.2
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 6.9e-36 155.2 309 40.1
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 1.5e-35 154.1 302 38.7
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 3.4e-35 152.9 311 36.0
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 3.4e-35 152.9 293 39.6
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 3.4e-35 152.9 360 36.9
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 7.6e-35 151.8 297 39.1
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 1.3e-34 151.0 235 43.4
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 1.3e-34 151.0 302 39.7
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 4.9e-34 149.1 309 35.0
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 4.9e-34 149.1 297 38.7
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 6.5e-34 148.7 219 45.7
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.9e-33 147.1 293 39.2
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 5.5e-33 145.6 312 34.9
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.5e-32 142.9 219 42.9
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 6.0e-32 142.1 162 55.6
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 7.9e-32 141.7 275 40.0
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 3.9e-31 139.4 147 57.1
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 1.9e-30 137.1 228 42.1
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 9.6e-30 134.8 306 36.3
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 1.8e-28 130.6 231 40.3
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 5.3e-28 129.0 366 31.7
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 5.3e-28 129.0 245 38.0
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 5.8e-27 125.6 311 35.0
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.0e-26 124.8 287 37.6
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 2.2e-26 123.6 269 37.9
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 2.2e-26 123.6 269 37.9
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 5.0e-26 122.5 316 35.8
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.5e-25 120.2 312 33.7
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 2.5e-25 120.2 324 33.3
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 3.2e-25 119.8 265 38.9
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 5.3e-20 102.4 155 45.8
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 1.2e-19 101.3 265 33.2
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 9.4e-17 91.7 176 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 3.6e-16 89.7 329 30.7
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 4.6e-16 89.4 363 28.1
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 1.1e-14 84.7 59 72.9
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.0e-14 84.0 355 28.5
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.0e-14 84.0 161 38.5
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.4e-12 77.8 347 30.0
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.4e-12 77.8 167 34.7
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.8e-12 77.4 355 27.6
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 4.1e-12 76.3 81 56.8
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 1.5e-11 74.3 196 33.7
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.5e-11 74.3 149 35.6
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 1.0e-10 71.6 116 41.4
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.8e-07 60.8 54 57.4
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 2.3e-07 60.5 43 62.8
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.3e-07 60.5 81 46.9
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 1.1e-06 58.2 249 29.3
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.5e-06 57.8 141 36.2
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 3.3e-06 56.6 66 48.5
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 3.3e-06 56.6 266 27.8
QL11p040051 Quercus lobata HOM05D001401 ORTHO05D006368 3.3e-06 56.6 97 47.4
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 4.4e-06 56.2 145 33.1
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 7.4e-06 55.5 153 32.0
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 9.7e-06 55.1 76 43.4
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 9.7e-06 55.1 126 34.1


User provided reference genes

Program Settings