Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 4088.9 2143 100.0
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2698.3 2129 70.6
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2681.4 2128 68.8
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2323.5 2231 60.0
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2252.6 2188 59.1
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2244.2 2157 59.1
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2175.2 2160 58.1
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2169.8 2159 57.9
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2163.7 2153 57.6
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2163.3 2154 58.2
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2140.9 2155 57.4
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2140.5 2153 57.7
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2139.0 2171 57.1
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2132.8 2156 57.3
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2127.1 2144 57.5
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2125.1 2150 57.6
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2115.9 2149 57.0
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2087.0 2281 54.8
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2083.9 2164 55.9
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2065.8 2142 55.4
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2053.1 2169 55.7
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2049.6 2155 55.5
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2044.2 2150 56.0
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2043.9 2152 55.4
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2040.4 2163 55.7
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2036.9 2174 54.9
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2036.2 2148 55.8
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2033.1 2160 55.5
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2029.2 2206 54.6
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2028.1 2148 55.8
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2023.4 2153 55.6
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2018.8 2148 55.4
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2017.3 2150 55.4
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2006.1 2150 54.8
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 1996.9 2157 53.6
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 1994.9 2145 54.7
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1993.0 2140 55.5
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1991.5 2145 54.7
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1990.3 1470 72.8
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 1988.0 2123 54.9
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 1984.9 2151 54.5
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 1983.4 2161 54.9
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 1983.4 2141 53.4
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 1976.8 2148 54.3
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1972.2 2167 54.1
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1971.8 2150 54.8
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 1971.4 2160 54.0
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1970.3 2159 54.1
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 1968.7 2155 54.7
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 1963.3 2147 54.1
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 1961.0 2153 54.2
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 1953.3 2147 54.2
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 1950.3 2167 52.7
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 1936.8 2010 56.7
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1932.5 2125 54.3
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1918.3 2199 52.9
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 1918.3 2150 52.7
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1910.2 2146 52.1
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1906.0 2151 53.4
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 1904.4 2218 52.2
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 1900.9 2150 53.6
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1892.5 2153 53.6
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1890.9 1937 55.6
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1888.2 2037 54.7
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1885.5 2136 52.2
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 1863.6 2275 50.3
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1862.8 2153 51.1
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1859.3 2140 51.1
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1847.8 1836 58.0
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 1810.0 2146 50.6
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 1809.3 2147 50.4
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1807.7 2169 51.2
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 1806.6 2141 50.1
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 1806.2 2148 50.3
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 1802.7 2140 50.3
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 1801.9 2149 50.4
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1795.4 2060 51.8
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1786.9 1911 54.6
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1773.1 2135 50.1
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1771.5 2150 49.9
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1765.0 2143 50.3
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1763.0 2131 49.7
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1760.0 2135 49.9
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1758.0 2133 49.8
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1747.6 2148 49.7
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1736.5 2152 48.8
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1736.5 2151 49.1
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1728.0 2149 49.0
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1701.0 2152 48.1
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1629.0 2185 46.9
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1601.6 1833 51.7
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1574.7 2150 46.5
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1525.8 1713 54.9
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1451.8 1383 59.7
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1447.2 1601 54.3
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1439.9 2155 44.5
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1433.7 1191 68.2
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1285.4 1262 58.3
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1273.5 2160 41.5
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1252.7 1888 43.1
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1166.4 1614 44.7
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1134.0 1423 47.3
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1113.2 1320 52.3
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 6.8e-267 925.6 777 63.4
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 1.2e-260 904.8 783 63.0
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 8.9e-259 898.7 779 62.8
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.1e-251 875.2 995 50.7
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 3.1e-243 847.0 839 56.9
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 7.1e-240 835.9 637 72.5
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 9.6e-237 825.5 2295 32.2
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 3.8e-233 813.5 1058 46.4
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 8.4e-217 759.2 2304 31.2
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.2e-207 728.8 1317 38.5
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 1.0e-198 699.1 672 58.9
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 3.7e-196 690.6 1277 39.2
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 6.1e-175 620.2 428 75.5
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 9.8e-173 612.8 2121 30.8
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 4.0e-166 590.9 1020 39.0
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.2e-159 569.3 592 53.4
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.1e-151 542.0 2068 27.8
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 2.3e-145 521.9 1768 30.5
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.1e-128 466.5 326 71.8
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 2.3e-113 415.6 601 43.9
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.2e-108 399.1 774 37.9
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 9.3e-99 367.1 318 63.5
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 5.1e-89 334.7 501 46.3
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 4.1e-86 325.1 227 70.5
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 4.2e-83 315.1 215 70.2
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 9.7e-80 303.9 536 37.7
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.4e-78 299.3 503 39.6
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 3.1e-70 272.3 293 52.2
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 4.2e-67 261.9 159 76.1
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 7.2e-67 261.2 280 54.6
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 1.4e-65 256.9 179 72.6
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 1.2e-64 253.8 327 53.2
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.6e-64 252.7 161 77.0
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-60 238.8 1108 25.6
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.9e-59 236.5 244 57.4
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.2e-58 233.8 293 46.8
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 2.3e-57 229.6 410 38.8
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 6.8e-57 228.0 181 67.4
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 1.0e-52 214.2 264 48.5
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 3.3e-51 209.1 165 64.8
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 3.6e-50 205.7 249 51.0
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.7e-44 186.8 125 67.2
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 2.3e-44 186.4 227 52.9
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 2.2e-39 169.9 629 28.3
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 4.1e-38 165.6 133 69.2
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 2.8e-34 152.9 321 38.3
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 3.5e-29 136.0 99 68.7
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.7e-26 125.6 408 27.2
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 5.8e-24 118.6 73 67.1
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 2.9e-23 116.3 110 59.1
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 1.1e-22 114.4 115 60.0
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 1.1e-22 114.4 115 60.0
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 1.4e-22 114.0 127 53.5
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 6.6e-20 105.1 119 58.0
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.5e-19 104.0 149 49.7
SGA_v2.0_scaffold90G27784 Striga asiatica HOM05D002693 ORTHO05D008074 2.4e-17 96.7 78 65.4
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 1.5e-16 94.0 388 33.5
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.5e-16 94.0 117 47.0
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.5e-16 94.0 65 66.2
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 1.3e-15 90.9 446 23.5
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.1e-14 87.8 67 67.2
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 9.3e-14 84.7 108 45.4
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 1.2e-13 84.3 157 38.9
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.6e-13 84.0 149 40.9
SalBow5G5224 Salvia bowleyana HOM05D041314 ORTHO05D004953 2.3e-12 80.1 55 76.4
SalBow8G3767 Salvia bowleyana HOM05D041314 ORTHO05D004953 2.3e-12 80.1 55 76.4
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 2.3e-12 80.1 131 42.0
SGA_v2.0_scaffold408G51088 Striga asiatica HOM05D006022 ORTHO05D007649 4.3e-11 75.9 70 60.0
SGA_v2.0_scaffold453G51880 Striga asiatica HOM05D000959 ORTHO05D000775 8.1e-10 71.6 66 74.2
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 9.0e-09 68.2 90 42.2
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 8.4e-07 61.6 53 67.9
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 9.3e-06 58.2 108 34.3
SGA_v2.0_scaffold152G36792 Striga asiatica HOM05D001336 ORTHO05D012836 9.3e-06 58.2 57 56.1


User provided reference genes

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