Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 5.8e-118 427.6 213 100.0
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 1.4e-100 369.8 210 86.7
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 6.3e-56 221.5 163 69.9
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.5e-52 209.5 161 65.2
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 7.2e-52 208.0 163 66.9
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 1.2e-51 207.2 161 66.5
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.7e-51 205.3 161 64.6
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.2e-43 180.6 162 61.1
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 2.0e-41 173.3 160 55.6
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.5e-36 157.1 161 52.2
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 2.1e-35 153.3 161 49.7
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 2.1e-35 153.3 163 47.9
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 3.6e-35 152.5 162 48.1
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 8.0e-35 151.4 165 50.9
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 8.0e-35 151.4 161 50.9
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.4e-34 150.6 162 51.2
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 3.0e-34 149.4 165 47.3
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 4.0e-34 149.1 161 50.3
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 6.8e-34 148.3 161 48.4
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 6.8e-34 148.3 165 49.7
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 6.8e-34 148.3 166 47.6
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 8.8e-34 147.9 166 49.4
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 8.8e-34 147.9 166 49.4
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 8.8e-34 147.9 161 49.7
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.2e-33 147.5 164 47.6
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.2e-33 147.5 165 50.9
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.2e-33 147.5 161 49.7
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.5e-33 147.1 163 49.1
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 2.0e-33 146.7 166 47.6
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 3.4e-33 146.0 166 47.0
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.7e-33 145.2 172 46.5
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 7.5e-33 144.8 164 48.2
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 9.8e-33 144.4 164 47.6
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 1.3e-32 144.1 166 48.2
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 4.9e-32 142.1 162 45.1
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 8.3e-32 141.4 166 45.8
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.4e-31 140.6 166 45.8
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.4e-31 140.6 175 45.1
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 3.1e-31 139.4 166 45.8
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 3.1e-31 139.4 166 48.2
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.1e-31 139.4 174 47.1
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.4e-31 138.7 166 47.0
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.2e-30 137.5 187 45.5
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.2e-30 137.5 176 42.6
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.2e-30 137.5 162 46.9
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.6e-30 137.1 166 44.6
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 2.0e-30 136.7 164 46.3
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.7e-30 136.3 160 44.4
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.5e-30 135.6 160 45.0
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.5e-30 135.6 157 47.1
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.5e-30 135.6 157 47.1
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 4.5e-30 135.6 175 44.0
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.9e-30 135.2 166 47.0
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 5.9e-30 135.2 166 45.8
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 5.9e-30 135.2 166 44.6
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.0e-29 134.4 166 45.8
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.0e-29 134.4 161 46.0
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.3e-29 134.0 160 43.8
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.7e-29 133.7 166 44.6
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 2.3e-29 133.3 168 44.0
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 2.9e-29 132.9 162 46.3
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 3.8e-29 132.5 166 44.6
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 6.6e-29 131.7 165 44.8
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 8.6e-29 131.3 165 45.5
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.1e-28 131.0 165 45.5
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.1e-28 131.0 166 44.6
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.1e-28 131.0 166 44.6
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.9e-28 130.2 160 41.9
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 1.9e-28 130.2 164 43.9
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.5e-28 129.8 164 46.3
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.5e-28 129.8 166 47.6
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.3e-28 129.4 166 42.8
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.3e-28 129.4 166 42.8
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 3.3e-28 129.4 165 47.9
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 5.6e-28 128.6 167 46.1
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 7.3e-28 128.3 162 48.8
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 7.3e-28 128.3 175 40.6
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.2e-27 127.5 179 43.0
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 1.6e-27 127.1 169 42.6
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.6e-27 125.9 165 47.3
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 4.7e-27 125.6 166 44.6
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 6.1e-27 125.2 167 44.9
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 6.1e-27 125.2 166 42.2
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.1e-27 125.2 165 44.2
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 8.0e-27 124.8 160 41.9
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 2.3e-26 123.2 167 42.5
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.0e-26 122.9 162 42.0
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 4.0e-26 122.5 166 42.2
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 5.2e-26 122.1 167 42.5
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 6.8e-26 121.7 160 39.4
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 6.8e-26 121.7 168 41.7
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 6.8e-26 121.7 149 49.0
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 8.9e-26 121.3 165 43.0
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 1.2e-25 120.9 166 40.4
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 2.0e-25 120.2 166 41.6
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.6e-25 119.8 165 40.0
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 4.4e-25 119.0 163 40.5
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 4.4e-25 119.0 167 43.7
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 5.7e-25 118.6 168 44.0
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 7.5e-25 118.2 166 44.0
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 7.5e-25 118.2 137 47.4
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.7e-24 117.1 165 39.4
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 2.9e-24 116.3 167 39.5
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 2.9e-24 116.3 166 41.6
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.9e-24 116.3 166 42.8
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 3.7e-24 115.9 167 37.7
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 4.9e-24 115.5 167 40.7
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.2e-23 112.8 166 38.0
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 3.2e-23 112.8 166 38.0
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 4.1e-23 112.5 166 37.3
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 5.4e-23 112.1 167 38.9
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.4e-23 112.1 161 40.4
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 7.0e-23 111.7 166 39.2
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 9.2e-23 111.3 168 39.9
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 9.2e-23 111.3 129 48.8
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.6e-22 110.5 167 37.1
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.7e-22 109.8 167 38.3
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 3.5e-22 109.4 167 41.3
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 4.6e-22 109.0 174 36.8
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 4.6e-22 109.0 149 41.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 5.9e-22 108.6 167 37.7
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 7.8e-22 108.2 166 41.0
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.7e-21 107.1 167 36.5
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 3.9e-21 105.9 121 50.4
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 3.9e-21 105.9 128 44.5
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 5.0e-21 105.5 171 40.4
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 1.1e-20 104.4 167 37.7
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 3.3e-20 102.8 165 37.6
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 3.3e-20 102.8 165 37.6
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.2e-19 100.9 165 38.2
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 6.2e-19 98.6 156 36.5
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 3.1e-18 96.3 75 57.3
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 4.0e-18 95.9 170 37.1
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 4.0e-18 95.9 171 36.8
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.0e-17 93.6 99 43.4
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 5.8e-17 92.0 170 38.2
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.2e-16 90.1 175 34.9
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 3.7e-16 89.4 79 53.2
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 7.8e-14 81.6 132 39.4
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.7e-13 80.5 177 31.6
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 7.3e-12 75.1 138 37.0
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 6.8e-10 68.6 103 39.8
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.6e-06 57.4 55 50.9
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.6e-06 57.4 56 50.0


User provided reference genes

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