Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 1.4e-171 606.3 318 100.0
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 2.2e-89 333.2 201 96.5
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 2.2e-89 333.2 201 96.5
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 7.1e-88 328.2 203 93.6
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 9.3e-88 327.8 198 95.5
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.2e-87 327.4 198 94.9
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 1.2e-87 327.4 197 95.9
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.2e-87 327.4 201 94.0
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 1.6e-87 327.0 197 95.4
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 2.1e-87 326.6 203 93.1
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 2.7e-87 326.2 197 95.4
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 3.5e-87 325.9 192 97.9
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.5e-87 325.9 198 94.9
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 6.0e-87 325.1 201 93.0
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 1.0e-86 324.3 198 94.9
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 1.0e-86 324.3 198 95.5
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 3.0e-86 322.8 192 96.9
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 3.0e-86 322.8 200 94.5
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 3.0e-86 322.8 192 97.4
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 3.9e-86 322.4 197 94.9
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 5.1e-86 322.0 198 93.9
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.1e-86 322.0 201 93.0
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 6.7e-86 321.6 192 96.4
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 8.7e-86 321.2 192 96.4
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.1e-85 320.9 192 96.4
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.1e-85 320.9 192 96.4
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 1.1e-85 320.9 198 92.4
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.5e-85 320.5 198 93.9
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 2.5e-85 319.7 198 92.9
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.5e-85 319.7 202 92.6
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.3e-85 319.3 198 93.4
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 3.3e-85 319.3 198 93.4
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 3.3e-85 319.3 198 93.4
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 5.6e-85 318.5 192 95.8
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 5.6e-85 318.5 192 95.8
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 5.6e-85 318.5 192 95.8
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 7.4e-85 318.2 205 89.8
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.3e-84 317.4 198 91.9
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 8.2e-84 314.7 191 95.3
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.4e-83 313.9 203 91.1
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 2.6e-82 309.7 202 90.1
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 2.6e-82 309.7 188 95.2
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 2.6e-82 309.7 188 95.2
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 4.5e-82 308.9 186 96.2
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 5.8e-82 308.5 186 96.2
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 7.6e-82 308.1 186 96.2
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 1.3e-81 307.4 186 95.7
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 1.7e-81 307.0 186 95.7
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.7e-81 307.0 186 95.7
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.7e-81 307.0 186 96.2
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.7e-81 307.0 186 96.2
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.7e-81 307.0 188 94.7
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.7e-81 307.0 188 95.2
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 2.2e-81 306.6 186 95.2
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 2.9e-81 306.2 185 96.2
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 2.9e-81 306.2 186 95.2
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.8e-81 305.8 186 95.7
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 3.8e-81 305.8 189 94.2
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 4.9e-81 305.4 186 95.2
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.9e-81 305.4 186 95.7
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 4.9e-81 305.4 186 95.7
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 6.5e-81 305.1 186 95.2
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 6.5e-81 305.1 186 95.2
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.5e-81 305.1 188 94.1
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 6.5e-81 305.1 188 94.1
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 6.5e-81 305.1 186 95.2
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 6.5e-81 305.1 186 95.2
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 8.4e-81 304.7 185 96.2
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.1e-80 304.3 186 95.2
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.4e-80 303.9 188 93.6
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.4e-80 303.9 188 94.1
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.4e-80 303.9 185 96.2
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.9e-80 303.5 189 93.7
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.9e-80 303.5 184 96.2
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.5e-80 303.1 188 93.6
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 2.5e-80 303.1 186 94.6
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 7.1e-80 301.6 185 93.5
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 9.3e-80 301.2 189 93.1
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-79 300.8 185 93.5
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.2e-79 300.8 189 92.1
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 1.2e-79 300.8 189 92.6
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.2e-79 300.8 189 92.1
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.6e-79 300.4 185 93.5
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.6e-79 300.4 185 93.5
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 1.6e-79 300.4 188 93.1
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.7e-79 299.7 189 92.1
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.7e-79 299.7 185 93.5
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 3.5e-79 299.3 185 93.0
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 3.5e-79 299.3 185 93.0
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.5e-79 299.3 185 93.5
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 4.6e-79 298.9 185 93.0
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 4.6e-79 298.9 185 93.0
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 4.6e-79 298.9 185 93.0
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 6.0e-79 298.5 188 92.0
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 6.0e-79 298.5 184 95.1
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 7.9e-79 298.1 189 91.5
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.0e-78 297.7 185 92.4
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.0e-78 297.7 185 92.4
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.0e-78 297.7 185 92.4
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.0e-78 297.7 185 92.4
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.0e-78 297.7 189 91.5
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 1.3e-78 297.4 192 90.6
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 1.3e-78 297.4 189 93.1
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.3e-78 297.4 185 92.4
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.8e-78 297.0 188 91.5
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 3.0e-78 296.2 185 93.0
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 3.0e-78 296.2 188 91.0
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 3.9e-78 295.8 179 96.6
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 5.1e-78 295.4 189 92.6
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 5.1e-78 295.4 186 93.0
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 6.7e-78 295.0 258 64.0
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 8.7e-78 294.7 185 91.9
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.1e-77 294.3 186 91.4
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.5e-77 293.9 185 91.9
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 1.6e-76 290.4 184 91.8
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 2.2e-76 290.0 180 93.9
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.4e-75 287.3 202 84.7
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 6.9e-75 285.0 171 97.1
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 6.9e-75 285.0 180 92.2
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.3e-73 280.8 185 88.6
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 2.2e-73 280.0 168 97.6
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 7.2e-72 275.0 185 88.6
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.5e-69 267.3 192 85.9
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 5.7e-69 265.4 187 84.0
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 5.7e-69 265.4 186 84.9
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.5e-66 257.3 160 95.0
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 3.4e-66 256.1 200 78.0
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 3.4e-66 256.1 164 90.9
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 5.9e-66 255.4 169 88.8
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 2.9e-65 253.1 185 79.5
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 4.7e-63 245.7 154 94.8
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.7e-63 245.7 180 81.7
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.8e-62 243.8 148 98.0
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 9.7e-61 238.0 148 92.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 3.7e-60 236.1 183 78.7
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.7e-57 227.3 178 71.3
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 2.9e-57 226.5 211 66.4
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.1e-56 224.6 158 76.6
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 7.2e-56 221.9 178 77.5
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 9.4e-56 221.5 137 97.1
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 4.4e-53 212.6 166 75.9
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 4.5e-50 202.6 153 81.7
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 5.9e-50 202.2 132 75.8
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 7.7e-50 201.8 132 94.7
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 8.5e-49 198.4 162 75.3
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 4.4e-45 186.0 97 90.7
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.7e-45 185.7 203 57.6
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 2.8e-44 183.3 124 75.8
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 2.1e-39 167.2 111 73.9
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 3.5e-34 149.8 123 65.9
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 3.8e-33 146.4 127 62.2
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 1.8e-27 127.5 92 71.7
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.1e-23 114.0 185 42.2
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.6e-18 97.8 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 2.0e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 2.5e-16 90.5 78 64.1
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.2e-07 61.6 109 44.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.1e-06 58.5 60 51.7


User provided reference genes

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