Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20511 Striga asiatica HOM05D002090 ORTHO05D001923 6.4e-60 233.8 112 100.0
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 3.7e-47 191.4 131 74.0
SGA_v2.0_scaffold21G09448 Striga asiatica HOM05D000353 ORTHO05D000174 6.5e-28 127.5 132 50.0
SGA_v2.0_scaffold53G19410 Striga asiatica HOM05D002090 ORTHO05D000174 2.1e-26 122.5 136 44.9
SGA_v2.0_scaffold29G12295 Striga asiatica HOM05D002090 ORTHO05D001923 8.0e-26 120.6 136 44.9
SGA_v2.0_scaffold199G41247 Striga asiatica HOM05D000346 ORTHO05D001923 2.2e-15 85.9 49 87.8
SGA_v2.0_scaffold5G02543 Striga asiatica HOM05D000353 ORTHO05D000174 4.8e-15 84.7 65 67.7
SGA_v2.0_scaffold353G49709 Striga asiatica HOM05D000353 ORTHO05D001923 6.3e-15 84.3 55 74.5
SGA_v2.0_scaffold142G35618 Striga asiatica HOM05D002090 ORTHO05D001923 2.4e-14 82.4 75 49.3
Lalb_Chr15g0085801 Lupinus albus HOM05D002090 ORTHO05D001923 1.9e-11 72.8 124 32.3
Lalb_Chr24g0399451 Lupinus albus HOM05D002090 ORTHO05D001923 1.2e-10 70.1 124 31.5
SGA_v2.0_scaffold311G48246 Striga asiatica HOM05D002090 ORTHO05D001923 1.2e-10 70.1 58 53.4
SGA_v2.0_scaffold3G01649 Striga asiatica HOM05D002090 ORTHO05D001923 1.2e-10 70.1 58 53.4
Glyma.03G056600 Glycine max HOM05D002090 ORTHO05D001923 1.4e-09 66.6 130 29.2
Glyma.19G107800 Glycine max HOM05D002090 ORTHO05D001923 5.2e-09 64.7 130 29.2
Glyma.02G178600 Glycine max HOM05D002090 ORTHO05D001923 1.2e-08 63.5 129 29.5
VMungo0540G0980 Vigna mungo HOM05D002090 ORTHO05D001923 1.2e-08 63.5 124 31.5
Lalb_Chr09g0332511 Lupinus albus HOM05D002090 ORTHO05D001923 3.4e-08 62.0 116 27.6
Glyma.01G071100 Glycine max HOM05D002090 ORTHO05D001923 4.4e-08 61.6 142 28.2
Glyma.09G080300 Glycine max HOM05D002090 ORTHO05D001923 4.4e-08 61.6 112 28.6
Medtr5g053590 Medicago truncatula HOM05D002090 ORTHO05D001923 4.4e-08 61.6 128 25.8
TPR.G31936 Trifolium pratense HOM05D002090 ORTHO05D001923 5.7e-08 61.2 129 27.1
Glyma.13G075500 Glycine max HOM05D002090 ORTHO05D001923 9.8e-08 60.5 131 28.2
TPR.G2805 Trifolium pratense HOM05D002090 ORTHO05D001923 9.8e-08 60.5 129 26.4
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.8e-07 58.9 124 29.8
Psat0s3648g0040 Pisum sativum HOM05D002090 ORTHO05D001923 2.8e-07 58.9 129 28.7
Glyma.13G025000 Glycine max HOM05D002090 ORTHO05D001923 3.7e-07 58.5 130 29.2
Glyma.14G139850 Glycine max HOM05D002090 ORTHO05D001923 3.7e-07 58.5 67 38.8
Ah.11g041650 Amaranthus hybridus HOM05D000353 ORTHO05D000174 4.8e-07 58.2 109 31.2
Glyma.18G142200 Glycine max HOM05D002090 ORTHO05D001923 4.8e-07 58.2 113 29.2
Thhalv10029167m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 6.3e-07 57.8 130 26.9
Glyma.04G181700 Glycine max HOM05D002090 ORTHO05D001923 6.3e-07 57.8 126 26.2
ECA232G2690 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.1e-06 57.0 131 26.0
Thhalv10000001m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 1.4e-06 56.6 140 25.7
Thhalv10023073m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 1.4e-06 56.6 140 25.7
Glyma.07G223800 Glycine max HOM05D002090 ORTHO05D001923 1.4e-06 56.6 109 30.3
Thhalv10000424m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 1.8e-06 56.2 130 25.4
Glyma.03G121900 Glycine max HOM05D002090 ORTHO05D001923 1.8e-06 56.2 126 27.0
Glyma.08G253400 Glycine max HOM05D002090 ORTHO05D001923 1.8e-06 56.2 126 27.0
Ah.06g184250 Amaranthus hybridus HOM05D027578 ORTHO05D000174 2.4e-06 55.8 71 40.8
HanXRQChr09g0260311 Helianthus annuus HOM05D000353 ORTHO05D000174 3.1e-06 55.5 128 30.5
Glyma.20G065700 Glycine max HOM05D002090 ORTHO05D001923 4.1e-06 55.1 137 27.7
arahy.Tifrunner.gnm1.ann1.P65711 Arachis hypogaea HOM05D008664 ORTHO05D000174 5.4e-06 54.7 129 25.6
BcaC04g20196 Brassica carinata HOM05D000353 ORTHO05D000174 5.4e-06 54.7 125 27.2
Glyma.09G106000 Glycine max HOM05D002090 ORTHO05D001923 9.1e-06 53.9 127 27.6


User provided reference genes

Program Settings