Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 0.0e+00 3943.3 2006 100.0
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 0.0e+00 2296.5 2058 60.5
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 0.0e+00 2002.6 2006 57.1
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 0.0e+00 1848.6 2030 52.4
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1521.9 2086 43.4
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1505.0 2048 43.5
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 0.0e+00 1487.6 2104 43.0
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 0.0e+00 1472.6 2029 44.0
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 0.0e+00 1465.3 2065 42.5
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 0.0e+00 1464.5 2051 42.5
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 0.0e+00 1459.1 2076 42.3
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 0.0e+00 1458.0 2018 43.5
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1456.4 2123 41.7
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 0.0e+00 1455.3 2127 42.0
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 0.0e+00 1430.6 2133 41.7
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 0.0e+00 1429.8 2141 41.8
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 0.0e+00 1406.3 2079 41.1
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 0.0e+00 1393.3 2095 41.7
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 0.0e+00 1386.7 2081 40.7
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 0.0e+00 1364.0 2060 40.9
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 0.0e+00 1351.3 2133 39.9
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 0.0e+00 1345.9 2089 40.1
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 0.0e+00 1340.9 2129 39.6
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 0.0e+00 1340.5 2018 40.2
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 0.0e+00 1331.6 2136 39.6
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 0.0e+00 1318.5 2064 39.9
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1313.1 2066 39.9
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 0.0e+00 1305.0 2078 39.7
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 0.0e+00 1298.1 2016 40.5
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 0.0e+00 1292.3 2148 38.3
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1290.4 2066 39.5
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 0.0e+00 1288.1 2018 40.7
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 0.0e+00 1272.3 2125 38.9
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 0.0e+00 1271.9 2025 39.3
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 0.0e+00 1270.0 2141 38.2
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 0.0e+00 1261.9 2136 38.4
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 0.0e+00 1241.9 2082 39.1
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1217.6 2149 36.9
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1208.4 2063 37.8
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1208.0 2063 37.9
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 0.0e+00 1206.0 1733 43.4
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 0.0e+00 1180.6 2040 37.7
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1175.2 2019 37.4
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 0.0e+00 1172.9 2016 37.9
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 0.0e+00 1172.5 2072 37.5
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 0.0e+00 1161.7 2077 37.6
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 0.0e+00 1152.5 2052 37.0
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 0.0e+00 1135.9 2041 36.8
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 0.0e+00 1131.3 2067 36.2
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 0.0e+00 1126.3 2066 37.4
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 0.0e+00 1119.8 1719 41.2
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1112.1 1986 37.2
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 0.0e+00 1109.7 2081 36.5
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 0.0e+00 1104.7 2088 36.1
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 0.0e+00 1097.0 2098 36.6
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 0.0e+00 1093.6 2054 35.4
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 0.0e+00 1089.7 2084 35.7
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 4.7e-310 1068.9 2040 35.9
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 4.7e-310 1068.9 1386 46.6
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 1.4e-306 1057.4 2094 35.1
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 2.4e-306 1056.6 2115 34.7
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 7.0e-306 1055.0 1977 36.3
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 8.5e-304 1048.1 2053 35.0
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 3.3e-300 1036.2 2062 35.1
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 7.5e-300 1035.0 2063 35.4
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 2.8e-299 1033.1 2040 35.0
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 6.3e-299 1031.9 2075 35.5
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 2.0e-297 1026.9 2029 35.4
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 2.3e-293 1013.4 1994 35.5
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 1.2e-289 1001.1 2053 35.1
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 4.0e-285 986.1 2017 34.6
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 8.3e-283 978.4 2005 35.0
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 6.6e-280 968.8 2096 34.3
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 3.0e-277 959.9 2036 34.3
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 9.8e-276 954.9 1534 39.7
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 8.3e-275 951.8 2051 33.7
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 3.2e-274 949.9 2066 34.0
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 1.0e-272 944.9 1995 33.8
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 1.3e-272 944.5 2034 33.3
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 7.3e-271 938.7 2091 33.6
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 2.8e-270 936.8 2043 34.0
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 2.8e-270 936.8 2043 34.0
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 6.2e-270 935.6 2172 32.8
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 1.0e-269 934.9 2021 33.6
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 1.8e-269 934.1 1981 34.6
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 4.1e-258 896.3 1953 33.8
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 1.1e-242 845.1 2054 32.5
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 7.6e-236 822.4 1639 36.0
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 4.2e-234 816.6 1741 33.7
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 2.8e-230 803.9 1503 36.5
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 9.6e-223 778.9 1991 30.1
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 6.7e-192 676.4 1648 32.6
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 6.3e-182 643.3 1449 33.7
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 3.4e-167 594.3 1059 35.0
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 2.4e-149 535.0 2015 26.1
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 6.6e-131 473.8 691 41.5
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 1.1e-130 473.0 1271 30.2
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 2.4e-128 465.3 765 39.5
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 4.0e-120 438.0 517 47.4
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 8.1e-113 413.7 993 31.4
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 5.5e-109 401.0 2312 23.9
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 2.5e-106 392.1 2173 22.9
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 7.4e-106 390.6 764 35.1
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 1.5e-98 366.3 2144 23.1
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 2.0e-82 312.8 386 49.0
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 1.2e-79 303.5 652 34.4
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 7.7e-71 274.2 1908 22.3
Dinv04971 Davidia involucrata HOM05D004890 ORTHO05D005869 4.0e-67 261.9 299 51.2
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 2.5e-61 242.7 1166 23.1
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 7.2e-61 241.1 588 31.8
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 1.8e-59 236.5 426 36.4
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 1.2e-55 223.8 662 30.5
Ah.01g022440 Amaranthus hybridus HOM05D004890 ORTHO05D005869 1.2e-52 213.8 380 33.9
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 3.5e-47 195.7 171 56.7
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 4.9e-41 175.3 482 31.7
SEGI_38665 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 1.1e-37 164.1 710 24.9
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 3.6e-36 159.1 343 32.9
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 2.4e-32 146.4 201 41.8
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 1.1e-27 131.0 255 35.7
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 2.6e-26 126.3 373 31.6
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 6.6e-22 111.7 106 56.6
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 8.1e-20 104.8 280 31.8
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 2.4e-19 103.2 184 33.7
RcHm_v2.0_Chr6g0245361 Rosa chinensis HOM05D004890 ORTHO05D005869 5.2e-19 102.1 156 41.0
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 4.9e-17 95.5 114 47.4
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 1.1e-16 94.4 120 43.3
CBR_g39037 Chara braunii HOM05D004890 ORTHO05D005869 2.1e-15 90.1 171 31.6
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 1.3e-14 87.4 57 66.7
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-14 87.4 103 43.7
MD10G1117400 Malus domestica HOM05D004890 ORTHO05D005869 1.9e-13 83.6 83 47.0
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 3.3e-13 82.8 51 68.6
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 3.3e-13 82.8 121 43.0
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 3.3e-13 82.8 123 39.0
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 5.6e-13 82.0 104 44.2
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 5.6e-13 82.0 270 28.5
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 1.6e-12 80.5 57 64.9
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 1.6e-12 80.5 57 64.9
RcHm_v2.0_Chr6g0245541 Rosa chinensis HOM05D004890 ORTHO05D005869 4.8e-12 79.0 116 38.8
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 6.2e-12 78.6 52 63.5
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 6.2e-12 78.6 52 63.5
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 1.8e-11 77.0 135 38.5
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 2.0e-10 73.6 73 45.2
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 1.3e-09 70.9 82 50.0
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 4.9e-09 68.9 146 35.6
SHI05680 Sapria himalayana HOM05D000105 ORTHO05D003034 6.4e-09 68.6 67 49.3
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 1.4e-08 67.4 118 34.7
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 3.2e-08 66.2 112 41.1
MD10G1117500 Malus domestica HOM05D004890 ORTHO05D005869 5.4e-08 65.5 321 25.2


User provided reference genes

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