Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 8.6e-310 1066.2 573 100.0
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 1.2e-247 859.8 574 77.4
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 1.1e-219 766.9 592 71.5
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.9e-218 761.1 577 72.4
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 2.3e-217 759.2 589 70.3
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 2.4e-203 712.6 626 62.9
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 3.6e-199 698.7 582 63.9
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 2.3e-198 696.0 575 66.6
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 9.5e-192 674.1 572 64.7
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 6.2e-191 671.4 572 64.5
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 6.2e-191 671.4 582 63.9
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 3.1e-190 669.1 572 64.0
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 6.8e-190 667.9 580 64.1
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 3.4e-189 665.6 580 63.8
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 1.4e-187 660.2 575 61.7
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 1.1e-184 650.6 571 60.9
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.9e-184 649.8 571 61.8
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 1.9e-184 649.8 577 62.4
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 2.5e-184 649.4 577 62.7
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 1.8e-182 643.3 600 59.2
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 5.2e-182 641.7 560 63.9
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 6.9e-182 641.3 577 61.4
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 6.9e-182 641.3 578 60.9
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 2.0e-181 639.8 564 60.5
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 3.4e-181 639.0 567 61.0
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 3.4e-181 639.0 576 62.5
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 5.8e-181 638.3 587 59.8
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 2.9e-180 636.0 545 64.8
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 3.8e-180 635.6 572 61.2
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.9e-179 633.3 566 60.4
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.9e-179 633.3 570 60.5
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 4.2e-179 632.1 575 60.5
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 7.1e-179 631.3 570 60.2
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 7.1e-179 631.3 566 60.6
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 7.1e-179 631.3 569 61.2
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 9.3e-179 630.9 566 62.4
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.6e-178 630.2 560 61.6
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 1.6e-178 630.2 579 59.6
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 1.6e-178 630.2 572 61.0
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 2.7e-178 629.4 572 60.7
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 3.0e-177 625.9 574 60.8
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.0e-177 625.9 574 60.8
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 3.0e-177 625.9 581 60.4
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 6.6e-177 624.8 575 59.8
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 8.7e-177 624.4 579 59.1
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 1.5e-176 623.6 521 63.9
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 1.9e-176 623.2 575 59.7
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 3.3e-176 622.5 569 61.2
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 5.6e-176 621.7 563 61.5
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 7.3e-176 621.3 546 63.6
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 9.6e-176 620.9 541 63.0
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 1.6e-175 620.2 552 62.1
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.1e-175 619.8 567 59.8
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 3.6e-175 619.0 565 61.8
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 4.8e-175 618.6 570 59.6
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.8e-174 616.7 574 60.5
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 4.0e-174 615.5 563 58.6
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 5.3e-174 615.1 550 62.2
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 5.3e-174 615.1 565 61.1
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 6.9e-174 614.8 574 60.3
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 9.0e-174 614.4 562 61.7
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 9.0e-174 614.4 566 58.3
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 1.2e-173 614.0 569 59.1
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.2e-173 614.0 569 60.3
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 1.5e-173 613.6 550 62.0
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.5e-173 613.6 574 60.1
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 4.5e-173 612.1 564 60.8
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 4.5e-173 612.1 570 59.3
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 4.5e-173 612.1 572 58.9
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 5.8e-173 611.7 567 59.4
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 9.9e-173 610.9 549 61.0
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.3e-172 610.5 549 62.3
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.3e-172 610.5 550 61.5
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 2.2e-172 609.8 551 61.5
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 3.8e-172 609.0 563 60.6
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 3.8e-172 609.0 549 61.7
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 6.4e-172 608.2 562 60.5
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.1e-171 607.4 585 59.5
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.4e-171 607.1 565 60.2
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 3.2e-171 605.9 563 59.1
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 4.2e-171 605.5 572 58.2
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 4.2e-171 605.5 563 60.4
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 3.5e-170 602.4 567 58.6
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 1.0e-169 600.9 587 59.1
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 2.8e-167 592.8 586 56.7
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 4.8e-167 592.0 560 58.2
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.1e-166 590.9 522 60.3
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 5.3e-166 588.6 574 58.7
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 7.6e-165 584.7 575 56.5
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 2.4e-163 579.7 559 56.7
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 2.1e-162 576.6 570 55.8
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 4.3e-160 568.9 483 62.1
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 7.9e-154 548.1 582 55.8
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 1.6e-146 523.9 584 51.5
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 5.1e-145 518.8 471 59.4
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 7.7e-141 505.0 538 54.1
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 3.3e-136 489.6 482 57.5
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 6.3e-135 485.3 466 57.5
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.4e-133 479.6 589 47.0
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 6.7e-129 465.3 512 53.3
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 4.4e-120 436.0 308 72.4
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.0e-113 414.8 412 57.8
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 7.5e-104 382.1 311 65.0
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 9.8e-104 381.7 291 69.8
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.1e-102 378.3 309 66.7
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 7.8e-101 372.1 527 41.9
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 3.0e-97 360.1 375 55.5
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 5.8e-96 355.9 368 54.3
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 1.3e-92 344.7 396 49.2
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 1.1e-91 341.7 354 55.9
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 4.0e-89 333.2 322 57.1
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.2e-88 331.6 395 50.4
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.2e-88 331.6 527 38.5
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.7e-87 327.8 322 56.5
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 5.4e-86 322.8 599 36.4
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 7.0e-86 322.4 350 50.9
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 1.6e-85 321.2 350 50.6
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 1.9e-78 297.7 272 60.7
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 2.4e-78 297.4 521 36.5
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 4.9e-71 273.1 237 62.0
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 5.3e-65 253.1 177 72.3
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.4e-49 201.1 524 32.1
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 8.7e-44 182.6 214 46.7
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 4.3e-43 180.3 172 55.8
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 2.5e-38 164.5 279 40.5
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.1e-33 149.1 347 28.8
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.4e-33 148.7 107 73.8
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 6.9e-33 146.4 433 25.2
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 2.0e-32 144.8 124 62.1
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 6.7e-28 129.8 90 72.2
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 9.7e-27 125.9 350 27.4
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 1.3e-26 125.6 606 25.6
SGA_v2.0_scaffold38G14986 Striga asiatica HOM05D005160 ORTHO05D006127 1.7e-26 125.2 149 53.7
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 1.2e-24 119.0 81 70.4
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 1.5e-24 118.6 336 26.8
SGA_v2.0_scaffold5G02731 Striga asiatica HOM05D005160 ORTHO05D006127 6.1e-21 106.7 67 82.1
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.3e-17 93.6 179 39.7
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 1.3e-15 89.0 180 37.2
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.9e-14 85.1 153 37.3
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 5.5e-14 83.6 446 22.2
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 8.0e-13 79.7 530 21.9
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 9.1e-09 66.2 220 26.8
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.2e-08 65.9 368 22.0
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 5.9e-08 63.5 220 25.5
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 1.3e-07 62.4 228 31.1
CBR_g50441 Chara braunii HOM05D003356 ORTHO05D004362 2.9e-07 61.2 236 22.9
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 3.8e-07 60.8 220 25.0
SGA_v2.0_scaffold300G47755 Striga asiatica HOM05D005160 ORTHO05D006127 6.5e-07 60.1 51 66.7
Carub.0001s2498 Capsella rubella HOM05D005032 ORTHO05D006268 1.5e-06 58.9 220 24.5
CARHR025960 Cardamine hirsuta HOM05D005032 ORTHO05D006268 1.9e-06 58.5 220 24.5
Aa31LG7G9000 Aethionema arabicum HOM05D005032 ORTHO05D006268 2.5e-06 58.2 221 23.5
AL1G39800 Arabidopsis lyrata HOM05D005032 ORTHO05D006268 2.5e-06 58.2 226 23.9
unitig_699.g19492 Utricularia gibba HOM05D005032 ORTHO05D006268 2.5e-06 58.2 227 26.0
AT1G25500 Arabidopsis thaliana HOM05D005032 ORTHO05D006268 3.2e-06 57.8 220 24.5
THA.LOC104808234 Tarenaya hassleriana HOM05D005032 ORTHO05D006268 5.5e-06 57.0 220 23.2
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 5.5e-06 57.0 329 22.5


User provided reference genes

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