Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20340 Striga asiatica HOM05D005628 ORTHO05D007348 1.1e-164 583.2 291 100.0
Migut.B00054 Erythranthe guttata HOM05D005628 ORTHO05D007348 5.0e-64 248.8 290 46.2
Solyc04g081970.3 Solanum lycopersicum HOM05D005628 ORTHO05D007348 6.4e-51 205.3 291 41.6
Sopen04g035620 Solanum pennellii HOM05D005628 ORTHO05D007348 6.4e-51 205.3 291 41.6
Cc10_g01120 Coffea canephora HOM05D005628 ORTHO05D007348 8.3e-51 204.9 229 47.2
Haze_22711 Corylus avellana HOM05D005628 ORTHO05D007348 8.3e-51 204.9 232 44.8
PGSC0003DMG400009956 Solanum tuberosum HOM05D005628 ORTHO05D007348 1.1e-50 204.5 291 41.6
QL02p012950 Quercus lobata HOM05D005628 ORTHO05D007348 1.4e-50 204.1 292 40.4
PSO170G4881 Papaver somniferum HOM05D005628 ORTHO05D007348 7.1e-50 201.8 226 44.2
Cfa014012 Carpinus fangiana HOM05D005628 ORTHO05D007348 9.2e-50 201.4 226 44.7
Actinidia29770 Actinidia chinensis HOM05D005628 ORTHO05D007348 1.6e-49 200.7 232 45.3
Potri.005G245700 Populus trichocarpa HOM05D005628 ORTHO05D007348 1.6e-49 200.7 226 46.9
vmacro04380 Vaccinium macrocarpon HOM05D005628 ORTHO05D007348 1.6e-49 200.7 297 39.7
TAR376G1006 Trochodendron aralioides HOM05D005628 ORTHO05D007348 2.1e-49 200.3 295 39.7
CAN.G311.75 Capsicum annuum HOM05D005628 ORTHO05D007348 4.6e-49 199.1 292 40.8
Dinv31894 Davidia involucrata HOM05D005628 ORTHO05D007348 4.6e-49 199.1 234 43.6
CiPaw.07G143500 Carya illinoinensis HOM05D005628 ORTHO05D007348 6.0e-49 198.7 226 44.7
Lj5g0010043 Lotus japonicus HOM05D005628 ORTHO05D007348 7.8e-49 198.4 275 41.8
Medtr1g026125 Medicago truncatula HOM05D005628 ORTHO05D007348 7.8e-49 198.4 291 39.5
Atru.chr13.215 Acer truncatum HOM05D005628 ORTHO05D007348 1.0e-48 198.0 280 41.4
Duzib116G0718 Durio zibethinus HOM05D005628 ORTHO05D007348 1.0e-48 198.0 250 41.2
Manes.05G142400 Manihot esculenta HOM05D005628 ORTHO05D007348 1.0e-48 198.0 237 42.2
Thecc.08G051900 Theobroma cacao HOM05D005628 ORTHO05D007348 1.0e-48 198.0 291 40.9
Oeu007384.1 Olea europaea HOM05D005628 ORTHO05D007348 1.3e-48 197.6 225 44.9
COL.COLO4_26082 Corchorus olitorius HOM05D005628 ORTHO05D007348 1.7e-48 197.2 232 44.4
Nn5g30848 Nelumbo nucifera HOM05D005628 ORTHO05D007348 1.7e-48 197.2 294 40.5
Sabra05G0189800 Salix brachista HOM05D005628 ORTHO05D007348 2.3e-48 196.8 239 42.7
Ciclev10001692m.g Citrus clementina HOM05D005628 ORTHO05D007348 3.0e-48 196.4 291 40.2
PSO210G2114 Papaver somniferum HOM05D005628 ORTHO05D007348 3.0e-48 196.4 291 40.2
EL10Ac1g02081 Beta vulgaris HOM05D005628 ORTHO05D007348 3.9e-48 196.1 272 40.8
Ca_13486_v3 Cicer arietinum L. HOM05D005628 ORTHO05D007348 3.9e-48 196.1 252 40.1
arahy.Tifrunner.gnm1.ann1.KUZ5B2 Arachis hypogaea HOM05D005628 ORTHO05D007348 8.6e-48 194.9 297 40.4
MBI05_g13277_MAGBIO Magnolia biondii HOM05D005628 ORTHO05D007348 8.6e-48 194.9 291 38.8
arahy.Tifrunner.gnm1.ann1.W1N14J Arachis hypogaea HOM05D005628 ORTHO05D007348 1.5e-47 194.1 297 40.4
BraA07t31693Z Brassica rapa HOM05D005628 ORTHO05D007348 2.5e-47 193.4 220 45.0
Lalb_Chr03g0033571 Lupinus albus HOM05D005628 ORTHO05D007348 2.5e-47 193.4 296 38.9
BolC6t40041H Brassica oleracea HOM05D005628 ORTHO05D007348 3.3e-47 193.0 221 44.3
Gohir.D05G185700 Gossypium hirsutum HOM05D005628 ORTHO05D007348 3.3e-47 193.0 220 45.0
Gorai.009G191100 Gossypium raimondii HOM05D005628 ORTHO05D007348 3.3e-47 193.0 220 45.0
Hma1.2p1_1598F.1_g292970 Hydrangea macrophylla HOM05D005628 ORTHO05D007348 3.3e-47 193.0 226 42.9
FvH4_2g37930 Fragaria vesca HOM05D005628 ORTHO05D007348 4.3e-47 192.6 299 38.5
Gohir.A05G182700 Gossypium hirsutum HOM05D005628 ORTHO05D007348 4.3e-47 192.6 220 44.5
Psat6g000840 Pisum sativum HOM05D005628 ORTHO05D007348 4.3e-47 192.6 237 40.9
Carub.0002s2297 Capsella rubella HOM05D005628 ORTHO05D007348 5.6e-47 192.2 239 41.8
AL2G36120 Arabidopsis lyrata HOM05D005628 ORTHO05D007348 7.3e-47 191.8 220 44.5
Cpa.g.sc26.263 Carica papaya HOM05D005628 ORTHO05D007348 7.3e-47 191.8 299 39.5
AUR62036715 Chenopodium quinoa HOM05D005628 ORTHO05D007348 9.5e-47 191.4 288 39.9
DCAR_009514 Daucus carota HOM05D005628 ORTHO05D007348 9.5e-47 191.4 227 43.2
Rhsim07G0251100 Rhododendron simsii HOM05D005628 ORTHO05D007348 9.5e-47 191.4 227 43.2
CANSAT64G0481 Cannabis sativa HOM05D005628 ORTHO05D007348 1.2e-46 191.0 237 43.0
Lj4C17T5 Lonicera japonica HOM05D005628 ORTHO05D007348 1.6e-46 190.7 295 36.9
Sc15g0004660 Simmondsia chinensis HOM05D005628 ORTHO05D007348 1.6e-46 190.7 252 39.3
FAN27G2668 Fragaria x ananassa HOM05D005628 ORTHO05D007348 2.1e-46 190.3 299 38.1
A07p41640 Brassica napus HOM05D005628 ORTHO05D007348 2.8e-46 189.9 302 38.4
C06p50020 Brassica napus HOM05D005628 ORTHO05D007348 2.8e-46 189.9 221 43.4
Migut.C00901 Erythranthe guttata HOM05D005628 ORTHO05D007348 3.6e-46 189.5 226 42.9
MSTRG.25277 Avicennia marina HOM05D005628 ORTHO05D007348 4.7e-46 189.1 237 42.2
Aqoxy5G01095 Aquilegia oxysepala HOM05D005628 ORTHO05D007348 6.2e-46 188.7 226 42.5
Thhalv10018920m.g Eutrema salsugineum HOM05D005628 ORTHO05D007348 6.2e-46 188.7 291 38.1
TWI56G0240 Tripterygium wilfordii HOM05D005628 ORTHO05D007348 8.1e-46 188.3 232 41.8
CSS0034642 Camellia sinensis var. sinensis HOM05D005628 ORTHO05D007348 1.1e-45 188.0 227 42.7
FAN20G0939 Fragaria x ananassa HOM05D005628 ORTHO05D007348 1.1e-45 188.0 299 38.1
CARHR069620 Cardamine hirsuta HOM05D005628 ORTHO05D007348 1.4e-45 187.6 220 44.1
MD15G1006700 Malus domestica HOM05D005628 ORTHO05D007348 1.4e-45 187.6 226 41.2
FAN15G2092 Fragaria x ananassa HOM05D005628 ORTHO05D007348 1.8e-45 187.2 299 38.1
TWI36G0492 Tripterygium wilfordii HOM05D005628 ORTHO05D007348 2.3e-45 186.8 226 43.4
MD08G1007500 Malus domestica HOM05D005628 ORTHO05D007348 4.0e-45 186.0 301 36.5
RcHm_v2.0_Chr6g0303681 Rosa chinensis HOM05D005628 ORTHO05D007348 5.2e-45 185.7 298 36.9
Sed0003076 Sechium edule HOM05D005628 ORTHO05D007348 6.8e-45 185.3 254 40.2
AT1G76080 Arabidopsis thaliana HOM05D005628 ORTHO05D007348 8.9e-45 184.9 221 43.4
PGR031G3420 Punica granatum HOM05D005628 ORTHO05D007348 8.9e-45 184.9 223 42.6
Eucgr.F03707 Eucalyptus grandis HOM05D005628 ORTHO05D007348 1.2e-44 184.5 300 38.7
Sp5g31200 Schrenkiella parvula HOM05D005628 ORTHO05D007348 1.5e-44 184.1 291 37.5
Prupe.1G359300 Prunus persica HOM05D005628 ORTHO05D007348 2.0e-44 183.7 303 37.3
SEGI_09368 Sequoiadendron giganteum HOM05D005628 ORTHO05D007348 2.6e-44 183.3 233 39.9
THA.LOC104811445 Tarenaya hassleriana HOM05D005628 ORTHO05D007348 2.6e-44 183.3 220 43.6
TPR.G26414 Trifolium pratense HOM05D005628 ORTHO05D007348 2.6e-44 183.3 220 42.3
Hund01723 Selenicereus undatus HOM05D005628 ORTHO05D007348 4.4e-44 182.6 232 39.7
BcaC08g47300 Brassica carinata HOM05D005628 ORTHO05D007348 9.9e-44 181.4 220 43.6
Lsat_1_v5_gn_0_661 Lactuca sativa HOM05D005628 ORTHO05D007348 1.7e-43 180.6 221 41.2
PSO648G0024 Papaver somniferum HOM05D005628 ORTHO05D007348 1.7e-43 180.6 286 37.8
PSO648G0070 Papaver somniferum HOM05D005628 ORTHO05D007348 1.7e-43 180.6 286 37.8
PSO648G0080 Papaver somniferum HOM05D005628 ORTHO05D007348 1.7e-43 180.6 286 37.8
PSO795G0001 Papaver somniferum HOM05D005628 ORTHO05D007348 1.7e-43 180.6 286 37.8
ClCG08G014020 Citrullus lanatus HOM05D005628 ORTHO05D007348 2.2e-43 180.3 287 38.7
CiPaw.08G069300 Carya illinoinensis HOM05D005628 ORTHO05D007348 8.3e-43 178.3 209 43.1
Os07g0476900 Oryza sativa ssp. japonica HOM05D005628 ORTHO05D007348 8.3e-43 178.3 221 43.4
Glyma.14G222500 Glycine max HOM05D005628 ORTHO05D007348 1.1e-42 177.9 226 40.7
ECA232G2943 Erigeron canadensis HOM05D005628 ORTHO05D007348 1.9e-42 177.2 225 41.8
BcaC08g47301 Brassica carinata HOM05D005628 ORTHO05D007348 3.2e-42 176.4 202 44.1
Lj9P400T45 Lonicera japonica HOM05D005628 ORTHO05D007348 4.1e-42 176.0 227 39.2
unitig_749.g13905 Utricularia gibba HOM05D005628 ORTHO05D007348 4.1e-42 176.0 258 39.1
Aa31LG4G6200 Aethionema arabicum HOM05D005628 ORTHO05D007348 5.4e-42 175.6 278 38.1
ATR0661G503 Amborella trichopoda HOM05D005628 ORTHO05D007348 7.1e-42 175.3 218 41.3
HanXRQChr05g0146641 Helianthus annuus HOM05D005628 ORTHO05D007348 7.1e-42 175.3 225 41.8
MELO3C011340.2 Cucumis melo HOM05D005628 ORTHO05D007348 2.7e-41 173.3 287 36.2
HPP92_014531 Vanilla planifolia HOM05D005628 ORTHO05D007348 6.0e-41 172.2 292 36.3
CsaV3_2G024440 Cucumis sativus L. HOM05D005628 ORTHO05D007348 7.8e-41 171.8 289 37.7
Phvul.001G002100 Phaseolus vulgaris HOM05D005628 ORTHO05D007348 1.0e-40 171.4 213 41.8
SGA_v2.0_scaffold145G36102 Striga asiatica HOM05D005628 ORTHO05D007348 1.3e-40 171.0 215 41.9
PSO339G4729 Papaver somniferum HOM05D005628 ORTHO05D007348 2.3e-40 170.2 230 39.6
PSO017G6535 Papaver somniferum HOM05D005628 ORTHO05D007348 6.6e-40 168.7 286 35.3
BcaC08g47294 Brassica carinata HOM05D005628 ORTHO05D007348 1.5e-39 167.5 221 41.2
Mapoly0024s0029 Marchantia polymorpha HOM05D005628 ORTHO05D007348 1.5e-39 167.5 269 36.4
PSO170G2194 Papaver somniferum HOM05D005628 ORTHO05D007348 1.9e-39 167.2 222 39.6
VMungo0647G1170 Vigna mungo HOM05D005628 ORTHO05D007348 1.9e-39 167.2 214 40.7
AUR62013879 Chenopodium quinoa HOM05D005628 ORTHO05D007348 2.1e-38 163.7 184 46.2
Actinidia37955 Actinidia chinensis HOM05D005628 ORTHO05D007348 2.8e-38 163.3 196 42.9
Zm00001eb319950 Zea mays HOM05D005628 ORTHO05D007348 2.8e-38 163.3 229 38.9
Nitab4.5_0003030g0070 Nicotiana tabacum HOM05D005628 ORTHO05D007348 3.2e-34 149.8 291 35.4
CDE02G2619 Ceratophyllum demersum HOM05D005628 ORTHO05D007348 6.0e-33 145.6 246 36.2
Peaxi162Scf00174g00813 Petunia axillaris HOM05D005628 ORTHO05D007348 1.3e-32 144.4 291 34.0
Pp3c13_21520 Physcomitrium patens HOM05D005628 ORTHO05D007348 1.3e-32 144.4 229 33.6
SMO356G0420 Selaginella moellendorffii HOM05D005628 ORTHO05D007348 5.6e-31 139.0 206 37.9
CBR_g26413 Chara braunii HOM05D005628 ORTHO05D007348 4.0e-29 132.9 232 31.0
C02p33470 Brassica napus HOM05D005628 ORTHO05D007348 5.4e-26 122.5 161 39.8
BcaC03g15644 Brassica carinata HOM05D005628 ORTHO05D007348 1.7e-24 117.5 131 45.0
BolC2t09357H Brassica oleracea HOM05D005628 ORTHO05D007348 3.0e-24 116.7 131 45.0
Ah.00g000640 Amaranthus hybridus HOM05D005628 ORTHO05D007348 1.5e-23 114.4 131 45.8
A02p20420 Brassica napus HOM05D005628 ORTHO05D007348 9.0e-21 105.1 115 45.2
Cre14.g624201 Chlamydomonas reinhardtii HOM05D005628 ORTHO05D007348 7.6e-12 75.5 195 24.6
Prupe.6G111600 Prunus persica HOM05D005628 ORTHO05D007348 7.6e-12 75.5 114 38.6
MELO3C034311.2 Cucumis melo HOM05D000247 ORTHO05D000288 1.6e-09 67.8 81 37.0
CsaV3_5G008640 Cucumis sativus L. HOM05D000247 ORTHO05D000288 1.6e-09 67.8 81 37.0
ClCG07G003750 Citrullus lanatus HOM05D000247 ORTHO05D000288 2.1e-09 67.4 92 38.0
PRCOL_00004342 Prasinoderma coloniale HOM05D005628 ORTHO05D007348 2.1e-09 67.4 154 29.2
PRCOL_00003728 Prasinoderma coloniale HOM05D005628 ORTHO05D005467 4.6e-09 66.2 93 38.7
Sed0005296 Sechium edule HOM05D000247 ORTHO05D000288 7.9e-09 65.5 81 38.3
Potri.002G016401 Populus trichocarpa HOM05D005628 ORTHO05D007348 1.0e-08 65.1 83 38.6
Sed0012665 Sechium edule HOM05D000247 ORTHO05D000288 1.0e-08 65.1 81 37.0
GSVIVG01009794001 Vitis vinifera HOM05D000247 ORTHO05D000288 1.0e-08 65.1 95 32.6
Sed0004327 Sechium edule HOM05D000247 ORTHO05D000288 1.3e-08 64.7 92 33.7
ECA232G0023 Erigeron canadensis HOM05D000247 ORTHO05D000288 1.9e-07 60.8 93 30.1
Mapoly0118s0007 Marchantia polymorpha HOM05D001256 ORTHO05D000288 2.5e-07 60.5 95 34.7
Atru.chr13.386 Acer truncatum HOM05D000247 ORTHO05D000288 3.3e-07 60.1 88 31.8
SGA_v2.0_scaffold201G41340 Striga asiatica HOM05D000247 ORTHO05D000288 4.3e-07 59.7 106 32.1
CSS0009264 Camellia sinensis var. sinensis HOM05D005628 ORTHO05D007348 5.7e-07 59.3 54 44.4
Duzib116G0134 Durio zibethinus HOM05D000247 ORTHO05D000288 5.7e-07 59.3 95 30.5
Manes.01G141300 Manihot esculenta HOM05D000247 ORTHO05D000288 7.4e-07 58.9 91 31.9
SMO364G0893 Selaginella moellendorffii HOM05D000247 ORTHO05D000288 7.4e-07 58.9 108 30.6
CARHR036230 Cardamine hirsuta HOM05D000247 ORTHO05D000288 9.6e-07 58.5 95 29.5
THA.LOC104819831 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 9.6e-07 58.5 108 30.6
Cc10_g02320 Coffea canephora HOM05D000247 ORTHO05D000288 1.3e-06 58.2 87 31.0
Solyc04g080850.3 Solanum lycopersicum HOM05D000247 ORTHO05D000288 1.3e-06 58.2 93 32.3
AT1G45145 Arabidopsis thaliana HOM05D000247 ORTHO05D000288 1.6e-06 57.8 77 37.7
CDE06G0052 Ceratophyllum demersum HOM05D000247 ORTHO05D000288 1.6e-06 57.8 94 30.9
Hma1.2p1_1394F.1_g280330 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 1.6e-06 57.8 83 33.7
SGA_v2.0_scaffold11G05848 Striga asiatica HOM05D000247 ORTHO05D000288 1.6e-06 57.8 97 33.0
CSS0028675 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 2.1e-06 57.4 82 35.4
Sopen04g034440 Solanum pennellii HOM05D000247 ORTHO05D000288 2.1e-06 57.4 93 31.2
EL10Ac1g00593 Beta vulgaris HOM05D000247 ORTHO05D000288 3.7e-06 56.6 95 33.7
Phvul.002G167100 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 3.7e-06 56.6 82 34.1
arahy.Tifrunner.gnm1.ann1.CN3GCM Arachis hypogaea HOM05D000247 ORTHO05D000288 4.8e-06 56.2 93 31.2
arahy.Tifrunner.gnm1.ann1.SNR3ID Arachis hypogaea HOM05D000247 ORTHO05D000288 4.8e-06 56.2 93 31.2
Migut.C00776 Erythranthe guttata HOM05D000247 ORTHO05D000288 4.8e-06 56.2 96 30.2
Lsat_1_v5_gn_4_116721 Lactuca sativa HOM05D000247 ORTHO05D000288 4.8e-06 56.2 92 30.4
Peaxi162Scf00189g00118 Petunia axillaris HOM05D000247 ORTHO05D000288 4.8e-06 56.2 89 32.6
CAN.G851.34 Capsicum annuum HOM05D000247 ORTHO05D000288 6.2e-06 55.8 85 34.1
QL02p010344 Quercus lobata HOM05D000247 ORTHO05D000288 6.2e-06 55.8 82 36.6
vmacro04313 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 6.2e-06 55.8 82 35.4
BcaC08g42895 Brassica carinata HOM05D000247 ORTHO05D000288 8.2e-06 55.5 77 36.4
C06p01190 Brassica napus HOM05D000247 ORTHO05D000288 8.2e-06 55.5 77 36.4
BolC6t35255H Brassica oleracea HOM05D000247 ORTHO05D000288 8.2e-06 55.5 77 36.4
CANSAT11G2653 Cannabis sativa HOM05D000247 ORTHO05D000288 8.2e-06 55.5 96 30.2
Glyma.04G028500 Glycine max HOM05D000247 ORTHO05D000288 8.2e-06 55.5 102 32.4
Lsat_1_v5_gn_4_116761 Lactuca sativa HOM05D000247 ORTHO05D000288 8.2e-06 55.5 81 34.6
Nitab4.5_0001289g0060 Nicotiana tabacum HOM05D000247 ORTHO05D000288 8.2e-06 55.5 91 30.8
Oeu030606.1 Olea europaea HOM05D000247 ORTHO05D000288 8.2e-06 55.5 87 32.2
PGSC0003DMG400003755 Solanum tuberosum HOM05D000247 ORTHO05D000288 8.2e-06 55.5 93 30.1
THA.LOC104814155 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 8.2e-06 55.5 78 37.2
THA.LOC104823326 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 8.2e-06 55.5 85 30.6


User provided reference genes

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