Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 0.0e+00 2775.3 1416 100.0
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 0.0e+00 1577.4 1437 60.6
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 0.0e+00 1546.6 1478 57.8
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1354.3 1479 52.1
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1239.9 1497 48.0
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1236.5 1510 47.2
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1219.1 1503 48.3
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1213.4 1496 47.8
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 0.0e+00 1203.7 1454 48.1
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 0.0e+00 1186.4 1463 47.5
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1181.4 1453 47.2
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1180.2 1443 47.3
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1179.9 1453 47.4
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1176.8 1488 46.0
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1174.5 1528 45.2
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 0.0e+00 1167.1 1444 47.4
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1163.7 1496 44.7
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1161.4 1544 44.2
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1158.7 1475 46.4
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 0.0e+00 1146.0 1472 46.1
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 0.0e+00 1144.0 1458 47.1
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1140.9 1600 43.8
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1140.9 1507 44.1
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1140.6 1485 45.3
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1137.5 1537 44.0
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1136.7 1538 43.8
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1123.2 1504 44.1
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1115.5 1503 43.9
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1115.1 1501 44.4
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1107.4 1455 45.0
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 1107.4 1498 43.0
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1105.5 1149 52.0
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1103.6 1492 43.0
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1099.0 1503 42.8
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1098.6 1487 44.7
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1098.2 1117 52.9
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1090.1 1495 43.1
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1087.4 1454 44.5
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1087.4 1466 44.7
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 1086.2 1502 43.4
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1085.5 1374 46.0
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 1083.6 1497 42.8
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1079.3 1473 44.3
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1077.0 1487 42.1
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1076.2 1473 44.5
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1076.2 1477 44.1
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1075.1 1496 43.3
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 3.9e-311 1072.0 1490 42.7
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 1.9e-310 1069.7 1505 43.3
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 2.5e-310 1069.3 1481 43.1
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 3.3e-310 1068.9 1489 42.9
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 5.6e-310 1068.1 1411 44.4
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 5.6e-310 1068.1 1481 43.8
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 1.6e-309 1066.6 1541 43.2
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 2.1e-309 1066.2 1470 44.2
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 2.8e-309 1065.8 1508 42.4
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 5.3e-308 1061.6 1473 44.1
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 5.3e-308 1061.6 1505 42.0
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 4.4e-307 1058.5 1507 42.4
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 1.4e-305 1053.5 1515 41.5
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 7.8e-304 1047.7 1496 43.6
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 1.6e-301 1040.0 1514 42.6
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 6.2e-301 1038.1 1478 42.6
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 4.0e-300 1035.4 1225 46.7
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 2.0e-299 1033.1 1487 42.8
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 1.7e-298 1030.0 1465 42.7
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 4.9e-298 1028.5 1465 42.0
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 6.4e-298 1028.1 1530 41.1
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 1.1e-294 1017.3 1421 42.1
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 1.1e-294 1017.3 1467 42.0
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 6.2e-293 1011.5 1553 41.0
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 8.1e-293 1011.1 1474 42.1
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 6.4e-290 1001.5 1247 46.1
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 1.9e-289 1000.0 1490 41.2
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 6.0e-288 995.0 1593 40.2
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 1.4e-284 983.8 1459 41.0
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 2.4e-284 983.0 1425 41.8
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 2.0e-283 979.9 1426 41.7
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 7.1e-281 971.5 1465 39.9
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 2.1e-280 969.9 1446 41.4
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 2.1e-280 969.9 1530 40.9
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 2.7e-280 969.5 1342 42.2
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 2.5e-278 963.0 1429 40.7
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 4.3e-278 962.2 1422 41.6
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 6.9e-276 954.9 1011 52.5
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 1.5e-259 900.6 1456 40.0
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.2e-258 896.7 1541 37.1
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 2.9e-258 896.3 1420 40.5
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 5.0e-258 895.6 1174 43.7
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 1.2e-256 891.0 1175 43.7
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 5.2e-255 885.6 1172 43.8
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 2.8e-253 879.8 1179 43.5
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 1.1e-225 788.1 952 44.6
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 5.2e-223 779.2 971 45.2
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 2.5e-217 760.4 1450 36.0
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 1.6e-216 757.7 1465 35.9
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.6e-182 644.0 1045 38.0
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.3e-160 572.0 1499 31.0
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 5.9e-158 563.1 1566 30.3
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 7.7e-158 562.8 540 57.2
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 8.5e-157 559.3 1463 30.7
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 1.5e-132 478.8 697 42.5
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 1.5e-129 468.8 723 38.6
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 2.0e-118 431.8 1142 31.2
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 3.5e-118 431.0 1108 28.9
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 1.5e-116 425.6 640 40.6
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 3.3e-108 397.9 765 33.5
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 1.8e-106 392.1 677 37.5
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 7.5e-105 386.7 557 41.7
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 6.2e-99 367.1 660 34.8
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 1.2e-89 336.3 430 44.4
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 8.6e-85 320.1 566 36.7
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 9.6e-84 316.6 640 35.8
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.8e-58 232.6 192 60.4
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 4.5e-57 228.0 490 35.9
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 7.6e-57 227.3 362 38.7
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 3.9e-53 214.9 262 49.2
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 8.7e-53 213.8 422 34.1
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.1e-46 192.6 125 72.0
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 4.1e-42 178.3 160 56.2
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 2.6e-41 175.6 906 24.2
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 1.3e-35 156.8 334 35.6
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 2.5e-31 142.5 301 39.9
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 7.2e-31 141.0 249 40.2
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.1e-28 133.7 247 37.7
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.8e-27 129.0 210 39.0
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 2.4e-26 125.9 97 63.9
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 4.1e-26 125.2 122 50.8
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.2e-22 113.6 142 45.1
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 6.7e-21 107.8 142 45.8
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.5e-20 104.4 197 38.1
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 9.7e-20 104.0 161 38.5
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.2e-19 102.8 197 37.6
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.7e-19 102.1 185 37.8
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.3e-19 101.3 185 37.8
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.4e-18 100.1 151 41.7
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.1e-18 98.6 166 36.1
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.9e-17 94.7 145 40.0
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.8e-16 92.0 145 39.3
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 2.5e-15 89.4 103 50.5
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.5e-15 88.2 145 38.6
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.5e-15 88.2 145 39.3
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.6e-14 86.7 145 38.6
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.2e-12 80.5 105 41.0
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 1.2e-12 80.5 183 32.2
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.5e-12 80.1 350 26.0
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.8e-11 75.1 130 38.5
Lalb_Chr10g0099061 Lupinus albus HOM05D004423 ORTHO05D005464 1.5e-07 63.5 94 41.5
Medtr2g060600 Medicago truncatula HOM05D004423 ORTHO05D005464 4.7e-06 58.5 75 40.0
HPP92_023982 Vanilla planifolia HOM05D004423 ORTHO05D005464 8.0e-06 57.8 117 28.2


User provided reference genes

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