Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.0e-227 793.1 407 100.0
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 3.2e-181 638.6 405 82.7
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.7e-177 624.8 409 80.7
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.4e-175 618.2 409 80.2
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 2.5e-170 602.4 407 76.9
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 2.2e-166 589.3 405 76.3
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.7e-164 582.4 408 72.8
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 3.4e-159 565.5 409 71.9
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 8.4e-158 560.8 456 67.5
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 2.4e-157 559.3 406 72.2
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.1e-156 556.2 409 69.7
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 6.0e-156 554.7 407 70.0
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 7.8e-156 554.3 405 70.9
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.0e-155 553.9 405 71.4
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 5.1e-155 551.6 405 70.6
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.6e-154 547.4 404 69.3
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.8e-153 545.8 419 66.8
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 2.4e-152 542.7 408 69.1
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 4.0e-152 542.0 408 68.9
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 5.2e-152 541.6 408 68.6
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 3.4e-151 538.9 406 69.0
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 3.4e-151 538.9 406 68.7
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 7.6e-151 537.7 410 68.3
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 2.9e-150 535.8 407 68.8
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 6.4e-150 534.6 409 68.9
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.1e-149 533.9 417 67.9
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 4.2e-149 531.9 405 67.2
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.3e-147 526.9 408 67.9
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.7e-147 526.6 407 68.1
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 5.1e-147 525.0 408 67.9
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 6.6e-147 524.6 405 66.7
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 5.6e-146 521.5 410 67.1
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 9.6e-146 520.8 408 66.7
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.6e-145 518.8 407 64.4
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 3.6e-145 518.8 405 66.4
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.8e-144 516.5 414 65.7
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 9.0e-144 514.2 407 66.3
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.2e-143 513.8 413 64.9
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.2e-143 513.8 405 66.9
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 3.4e-143 512.3 406 65.8
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 4.5e-143 511.9 408 65.2
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 9.9e-143 510.8 405 66.9
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.8e-142 508.8 397 66.5
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.4e-141 506.9 408 64.7
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.9e-141 506.5 408 65.0
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.0e-140 501.5 405 65.2
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 3.0e-139 499.2 439 62.0
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 6.7e-139 498.0 402 64.4
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 3.3e-138 495.7 408 63.5
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.3e-138 495.7 408 64.0
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 7.4e-138 494.6 398 65.6
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.0e-136 488.8 404 63.9
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.0e-136 488.8 406 64.0
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.5e-135 486.9 408 63.2
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 7.6e-135 484.6 409 60.6
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.3e-134 483.8 408 61.0
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 2.2e-134 483.0 416 61.3
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 3.8e-134 482.3 423 61.7
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 4.9e-134 481.9 404 63.6
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.4e-133 480.3 405 62.0
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.9e-133 479.9 405 62.2
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 6.0e-132 474.9 405 60.0
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 3.3e-130 469.2 420 58.8
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 4.3e-130 468.8 365 64.7
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 3.7e-129 465.7 408 61.3
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.7e-129 465.7 408 61.0
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 4.8e-129 465.3 346 72.0
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.2e-129 464.9 361 66.8
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.1e-128 464.2 408 60.8
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.8e-128 463.4 408 59.8
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.4e-128 463.0 408 60.5
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 5.3e-128 461.8 406 59.6
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 6.9e-128 461.5 405 57.8
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.5e-127 460.3 405 57.8
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.0e-127 459.9 400 61.0
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 2.0e-127 459.9 408 60.5
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.0e-126 457.6 490 53.1
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.0e-126 457.6 401 58.1
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.7e-126 456.8 408 59.8
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 2.2e-126 456.4 410 62.9
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 2.9e-126 456.1 405 58.8
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.8e-126 455.7 394 61.2
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.1e-125 451.4 431 57.5
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.6e-124 450.3 398 61.8
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.6e-124 450.3 396 59.1
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.1e-124 449.9 410 58.8
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 3.5e-124 449.1 332 67.8
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 6.0e-124 448.4 401 58.4
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 7.9e-124 448.0 400 58.5
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.9e-123 445.7 409 59.4
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.5e-122 443.7 344 64.0
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 5.7e-122 441.8 408 56.9
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 1.3e-121 440.7 405 56.5
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.4e-120 437.2 403 60.5
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-120 437.2 394 59.9
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.5e-119 433.7 398 57.0
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.3e-118 430.6 361 62.9
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.7e-118 430.3 405 58.8
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 2.2e-118 429.9 404 56.7
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 3.8e-118 429.1 389 59.4
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-116 424.1 399 55.6
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.6e-116 423.7 406 54.9
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 2.1e-116 423.3 402 54.7
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 4.6e-116 422.2 402 56.5
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.0e-115 421.0 406 55.4
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 2.3e-115 419.9 415 54.2
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 5.1e-115 418.7 406 55.2
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 7.4e-114 414.8 417 53.5
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 9.7e-114 414.5 406 54.9
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 3.7e-113 412.5 406 54.4
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 4.8e-113 412.1 406 54.4
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.8e-112 410.2 406 54.7
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.4e-112 409.8 410 55.1
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.4e-112 409.8 405 55.3
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 5.3e-112 408.7 408 54.7
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 5.3e-112 408.7 408 54.7
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.6e-111 406.4 400 55.5
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 2.6e-111 406.4 400 55.5
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.0e-110 404.4 428 51.9
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.3e-110 404.1 382 55.0
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 6.5e-110 401.7 405 54.1
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.1e-109 401.0 370 60.8
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.9e-109 400.2 428 54.9
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.4e-107 394.0 392 54.3
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.8e-107 391.3 408 53.9
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-106 391.0 408 53.9
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.3e-105 387.5 405 53.1
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.7e-105 387.1 291 73.2
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 4.2e-101 372.5 406 50.5
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.0e-99 367.9 404 49.8
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.1e-98 364.4 395 50.9
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 9.7e-98 361.3 216 79.6
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 9.4e-93 344.7 216 76.4
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.2e-92 344.4 222 74.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 2.1e-92 343.6 286 57.0
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 4.0e-91 339.3 373 48.3
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.7e-90 334.7 409 51.8
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 3.5e-87 326.2 402 45.5
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 3.0e-83 313.2 393 48.1
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.2e-81 307.0 344 47.1
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 4.1e-80 302.8 340 46.8
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 5.4e-80 302.4 413 43.6
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.6e-79 300.8 409 41.8
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.6e-79 300.8 323 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 4.5e-79 299.3 314 48.1
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 2.3e-67 260.4 265 54.3
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.4e-64 251.1 176 67.6
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.1e-56 223.0 156 71.8
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.0e-50 204.1 135 68.1
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.1e-48 198.4 220 53.2
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 3.8e-41 173.3 247 38.5
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 6.0e-39 166.0 224 47.3
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 6.6e-38 162.5 273 33.7
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.6e-36 157.9 230 45.7
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 3.2e-32 143.7 95 67.4
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 9.3e-32 142.1 192 38.5
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 4.2e-24 116.7 76 64.5
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 5.4e-24 116.3 190 42.1
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 9.3e-24 115.5 73 67.1
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.5e-16 90.9 56 71.4
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 4.6e-15 86.7 230 26.5
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.9e-09 67.4 55 60.0
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 2.5e-08 64.3 43 69.8
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 3.2e-08 63.9 49 55.1


User provided reference genes

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