Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 9.1e-108 393.7 210 100.0
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 8.1e-40 167.9 189 56.6
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.9e-25 120.2 197 45.2
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.8e-24 116.3 213 42.3
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.8e-18 97.1 178 42.1
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.3e-16 90.9 195 37.4
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 4.5e-14 82.4 180 37.2
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.7e-13 80.5 157 40.8
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 8.5e-13 78.2 204 35.8
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.5e-13 78.2 156 41.0
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 8.5e-13 78.2 217 33.2
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 8.5e-13 78.2 201 37.3
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.5e-12 76.6 195 36.9
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.5e-12 76.6 195 36.9
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.2e-12 76.3 197 36.0
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 4.2e-12 75.9 190 36.3
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.1e-11 73.6 188 35.6
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.1e-11 73.6 214 36.4
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 2.7e-11 73.2 145 41.4
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 3.6e-11 72.8 148 39.2
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 6.1e-11 72.0 190 35.8
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 7.9e-11 71.6 204 35.3
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 7.9e-11 71.6 175 33.7
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.4e-10 70.9 225 33.3
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.4e-10 70.9 195 36.9
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.8e-10 70.5 156 39.1
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.3e-10 70.1 174 36.2
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 2.3e-10 70.1 190 33.7
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 3.0e-10 69.7 197 33.5
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 3.0e-10 69.7 146 38.4
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.9e-10 69.3 162 35.2
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.8e-10 68.2 182 35.2
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 8.8e-10 68.2 147 37.4
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.1e-09 67.8 202 34.7
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.5e-09 67.4 177 33.3
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 2.0e-09 67.0 197 34.5
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 2.6e-09 66.6 169 32.5
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.3e-09 66.2 182 34.6
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 4.4e-09 65.9 186 32.8
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 5.7e-09 65.5 147 38.1
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 5.7e-09 65.5 196 34.7
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 7.4e-09 65.1 126 39.7
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 7.4e-09 65.1 178 32.0
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.3e-08 64.3 176 33.0
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.3e-08 64.3 88 47.7
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.7e-08 63.9 173 33.5
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.7e-08 63.9 197 34.0
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.7e-08 63.9 180 33.3
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 2.2e-08 63.5 146 34.9
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.3e-08 62.0 147 38.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 8.2e-08 61.6 131 37.4
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 8.2e-08 61.6 131 37.4
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.1e-07 61.2 145 37.2
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 2.4e-07 60.1 149 38.9
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.4e-07 60.1 149 38.9
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.4e-07 60.1 149 38.9
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.4e-07 60.1 131 36.6
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.1e-07 59.7 128 39.1
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 4.1e-07 59.3 176 32.4
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 5.3e-07 58.9 176 32.4
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 7.0e-07 58.5 151 39.1
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 7.0e-07 58.5 192 32.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.5e-06 57.4 68 48.5
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 2.0e-06 57.0 155 34.8
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 2.6e-06 56.6 183 32.8
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 5.9e-06 55.5 179 30.2


User provided reference genes

Program Settings