Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 7.8e-55 216.9 107 100.0
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 4.2e-24 114.8 84 69.0
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 4.0e-19 98.2 82 61.0
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 6.9e-19 97.4 83 57.8
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 9.0e-19 97.1 84 57.1
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 3.4e-18 95.1 82 58.5
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 3.4e-18 95.1 84 58.3
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 4.5e-18 94.7 84 57.1
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 4.5e-18 94.7 80 58.8
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 5.8e-18 94.4 80 56.2
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 7.6e-18 94.0 80 58.8
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 7.6e-18 94.0 84 54.8
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 1.3e-17 93.2 98 49.0
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.3e-17 93.2 84 56.0
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 2.9e-17 92.0 80 56.2
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.9e-17 92.0 96 52.1
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 4.9e-17 91.3 80 55.0
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 4.9e-17 91.3 80 56.2
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 4.9e-17 91.3 80 56.2
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 4.9e-17 91.3 81 56.8
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 6.4e-17 90.9 80 56.2
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 6.4e-17 90.9 82 53.7
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 8.4e-17 90.5 82 54.9
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 8.4e-17 90.5 90 51.1
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 8.4e-17 90.5 77 55.8
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 8.4e-17 90.5 90 53.3
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.1e-16 90.1 80 55.0
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.1e-16 90.1 88 54.5
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.1e-16 90.1 80 56.2
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 1.4e-16 89.7 80 56.2
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.4e-16 89.7 80 57.5
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 1.4e-16 89.7 81 58.0
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 1.9e-16 89.4 84 54.8
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 1.9e-16 89.4 83 55.4
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.9e-16 89.4 86 55.8
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 2.4e-16 89.0 83 55.4
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 2.4e-16 89.0 80 55.0
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.4e-16 89.0 78 55.1
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 3.2e-16 88.6 82 53.7
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 3.2e-16 88.6 83 54.2
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 3.2e-16 88.6 82 53.7
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 5.5e-16 87.8 82 53.7
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 5.5e-16 87.8 81 49.4
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 5.5e-16 87.8 82 53.7
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 5.5e-16 87.8 82 53.7
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 5.5e-16 87.8 82 56.1
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 5.5e-16 87.8 82 56.1
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 7.1e-16 87.4 82 53.7
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 7.1e-16 87.4 80 52.5
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 7.1e-16 87.4 80 53.8
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 9.3e-16 87.0 83 53.0
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 9.3e-16 87.0 82 52.4
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 1.6e-15 86.3 85 52.9
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 2.1e-15 85.9 80 50.0
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.1e-15 85.9 86 53.5
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.1e-15 85.9 86 53.5
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 2.7e-15 85.5 79 53.2
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 2.7e-15 85.5 56 69.6
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 2.7e-15 85.5 86 47.7
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 3.5e-15 85.1 56 66.1
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 3.5e-15 85.1 78 53.8
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 3.5e-15 85.1 80 53.8
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 3.5e-15 85.1 90 47.8
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 4.6e-15 84.7 86 46.5
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 6.0e-15 84.3 90 46.7
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 7.9e-15 84.0 57 64.9
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 1.0e-14 83.6 82 51.2
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 1.3e-14 83.2 83 48.2
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 1.3e-14 83.2 78 56.4
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 1.3e-14 83.2 80 52.5
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 2.3e-14 82.4 80 52.5
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.0e-14 82.0 90 46.7
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 3.0e-14 82.0 80 50.0
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 3.0e-14 82.0 80 50.0
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 3.0e-14 82.0 80 51.2
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 5.1e-14 81.3 80 50.0
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 5.1e-14 81.3 79 51.9
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 6.7e-14 80.9 76 53.9
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 6.7e-14 80.9 80 50.0
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 6.7e-14 80.9 82 46.3
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 8.7e-14 80.5 79 50.6
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 8.7e-14 80.5 82 48.8
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 1.9e-13 79.3 58 62.1
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 1.9e-13 79.3 77 48.1
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.9e-13 79.3 80 48.8
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 2.5e-13 79.0 72 55.6
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 5.6e-13 77.8 80 47.5
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 5.6e-13 77.8 80 47.5
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 5.6e-13 77.8 84 50.0
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 7.4e-13 77.4 80 50.0
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 7.4e-13 77.4 80 50.0
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 7.4e-13 77.4 90 47.8
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.3e-12 76.6 83 48.2
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 3.7e-12 75.1 80 46.2
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 6.2e-12 74.3 80 45.0
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 1.1e-11 73.6 72 51.4
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 1.4e-11 73.2 84 47.6
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 2.4e-11 72.4 80 42.5
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 2.4e-11 72.4 80 45.0
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 4.0e-11 71.6 69 52.2
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 4.0e-11 71.6 77 45.5
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 4.0e-11 71.6 53 60.4
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 6.9e-11 70.9 80 41.2
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 1.2e-10 70.1 85 43.5
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 1.5e-10 69.7 80 45.0
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 7.6e-10 67.4 51 60.8
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 4.9e-09 64.7 53 56.6
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 8.4e-09 63.9 83 41.0
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 2.5e-08 62.4 85 40.0
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 3.2e-08 62.0 45 62.2
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 3.2e-08 62.0 53 54.7
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 9.3e-08 60.5 84 40.5
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 1.2e-07 60.1 88 39.8
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 2.7e-07 58.9 86 39.5
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 3.5e-07 58.5 90 40.0
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 6.0e-07 57.8 63 46.0
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 6.0e-07 57.8 63 46.0
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 6.0e-07 57.8 85 40.0
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 1.8e-06 56.2 85 40.0
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 1.8e-06 56.2 81 37.0
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 1.8e-06 56.2 88 38.6
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 2.3e-06 55.8 52 48.1
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 2.3e-06 55.8 52 48.1
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 2.3e-06 55.8 71 39.4
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 3.0e-06 55.5 84 38.1
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 3.0e-06 55.5 84 38.1
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 6.7e-06 54.3 83 37.3


User provided reference genes

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